Wall clock time and date at job start Mon Mar 8 2021 10:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32613 * 1 3 3 C 1.47741 * 119.99644 * 2 1 4 4 C 1.39464 * 120.16953 * 132.63513 * 3 2 1 5 5 C 1.38000 * 119.91006 * 179.97438 * 4 3 2 6 6 C 1.38373 * 120.25782 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.35046 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.95908 * 179.97438 * 7 6 5 9 9 O 1.42903 * 109.47129 * 255.38373 * 8 7 6 10 10 Si 1.86300 * 109.47137 * 15.38744 * 8 7 6 11 11 H 1.48495 * 109.47019 * 60.00229 * 10 8 7 12 12 H 1.48499 * 109.46854 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47320 * 299.99634 * 10 8 7 14 14 C 1.38512 * 120.07922 * 359.74299 * 7 6 5 15 15 O 1.35828 * 120.12815 * 180.27690 * 14 7 6 16 16 C 1.42902 * 116.99988 * 92.90240 * 15 14 7 17 17 F 1.39903 * 109.47084 * 305.84801 * 16 15 14 18 18 F 1.39896 * 109.47022 * 65.84736 * 16 15 14 19 19 Si 1.86795 * 120.00504 * 179.97438 * 2 1 3 20 20 C 1.86304 * 109.47089 * 94.04267 * 19 2 1 21 21 C 1.86297 * 109.47308 * 214.04338 * 19 2 1 22 22 C 1.86303 * 109.46961 * 334.04555 * 19 2 1 23 23 H 1.07999 * 119.99555 * 174.63067 * 1 2 3 24 24 H 1.08000 * 120.00529 * 354.35974 * 1 2 3 25 25 H 1.07997 * 120.04963 * 359.95731 * 4 3 2 26 26 H 1.07999 * 119.86938 * 180.02562 * 5 4 3 27 27 H 1.08001 * 119.82285 * 180.02562 * 6 5 4 28 28 H 1.09005 * 109.46944 * 135.39010 * 8 7 6 29 29 H 0.96703 * 113.99700 * 60.00233 * 9 8 7 30 30 H 1.09000 * 109.47283 * 185.85339 * 16 15 14 31 31 H 1.08997 * 109.47083 * 59.99727 * 20 19 2 32 32 H 1.09001 * 109.47265 * 180.02562 * 20 19 2 33 33 H 1.09004 * 109.46730 * 300.00260 * 20 19 2 34 34 H 1.09004 * 109.47141 * 62.97343 * 21 19 2 35 35 H 1.09004 * 109.47030 * 182.96923 * 21 19 2 36 36 H 1.08998 * 109.47388 * 302.97117 * 21 19 2 37 37 H 1.09002 * 109.47244 * 59.99912 * 22 19 2 38 38 H 1.09001 * 109.47078 * 179.97438 * 22 19 2 39 39 H 1.08999 * 109.46748 * 299.99712 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0648 1.2795 0.0000 4 6 3.1224 1.4782 0.8870 5 6 3.8090 2.6753 0.8821 6 6 3.4526 3.6799 -0.0003 7 6 2.4060 3.4944 -0.8841 8 6 2.0249 4.5946 -1.8408 9 8 0.8264 5.2267 -1.3869 10 14 3.3979 5.8513 -1.9207 11 1 4.6433 5.1944 -2.3925 12 1 3.0227 6.9351 -2.8639 13 1 3.6224 6.4258 -0.5699 14 6 1.7102 2.2968 -0.8947 15 8 0.6853 2.1114 -1.7665 16 6 1.0010 1.4979 -3.0179 17 9 2.0324 2.2101 -3.6394 18 9 1.4110 0.1782 -2.8000 19 14 2.2602 -1.6176 0.0007 20 6 2.6780 -2.0942 -1.7512 21 6 3.8311 -1.4272 0.9839 22 6 1.2031 -2.9448 0.7701 23 1 -0.5399 -0.9312 -0.0875 24 1 -0.5401 0.9307 0.0919 25 1 3.4037 0.6965 1.5771 26 1 4.6283 2.8283 1.5690 27 1 3.9950 4.6138 0.0016 28 1 1.8602 4.1729 -2.8324 29 1 0.9001 5.6250 -0.5088 30 1 0.1188 1.5033 -3.6581 31 1 3.2964 -1.3177 -2.2013 32 1 3.2227 -3.0384 -1.7508 33 1 1.7588 -2.2056 -2.3264 34 1 3.5853 -1.2002 2.0213 35 1 4.4017 -2.3550 0.9404 36 1 4.4256 -0.6151 0.5653 37 1 0.2840 -3.0562 0.1948 38 1 1.7480 -3.8888 0.7701 39 1 0.9587 -2.6659 1.7950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:12 Heat of formation + Delta-G solvation = -170.957031 kcal Electronic energy + Delta-G solvation = -24364.703903 eV Core-core repulsion = 20646.248454 eV Total energy + Delta-G solvation = -3718.455449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.106 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.02645 -48.14343 -41.25431 -38.35331 -37.67289 -34.91012 -32.20795 -30.47469 -29.59626 -28.52143 -28.34856 -27.10859 -26.35692 -24.10562 -22.52404 -20.56092 -19.86534 -19.10329 -18.68346 -18.14549 -17.04196 -16.77974 -16.66604 -15.97971 -15.64848 -15.37972 -14.99378 -14.82901 -14.66504 -14.45889 -14.37998 -14.14807 -14.02967 -13.88859 -13.67572 -13.51141 -13.27941 -13.21553 -13.14052 -13.02109 -12.88118 -12.73932 -12.39115 -12.12798 -11.85084 -11.66851 -11.27680 -10.91353 -10.90170 -10.48679 -10.26814 -9.78109 -9.26170 -0.07139 0.08345 1.12905 1.19305 1.39371 1.51525 1.73579 1.86207 1.90275 1.98297 2.13067 2.56738 2.69190 2.79063 3.47583 3.57494 3.65996 3.75383 3.81527 3.96437 4.23609 4.33806 4.39877 4.55642 4.67412 4.69011 4.71451 4.72122 4.82227 4.84806 4.86654 4.93011 5.14129 5.28153 5.36832 5.42852 5.46334 5.52244 5.58485 5.64687 5.80293 6.18066 6.57589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.378 4.378 3 C -0.029 4.029 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.129 4.129 7 C -0.114 4.114 8 C -0.083 4.083 9 O -0.530 6.530 10 Si 0.947 3.053 11 H -0.247 1.247 12 H -0.251 1.251 13 H -0.250 1.250 14 C 0.092 3.908 15 O -0.317 6.317 16 C 0.402 3.598 17 F -0.205 7.205 18 F -0.193 7.193 19 Si 1.048 2.952 20 C -0.441 4.441 21 C -0.453 4.453 22 C -0.448 4.448 23 H 0.104 0.896 24 H 0.098 0.902 25 H 0.144 0.856 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.374 0.626 30 H 0.172 0.828 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 -1.192 1.224 1.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.419 4.419 3 C -0.029 4.029 4 C -0.134 4.134 5 C -0.120 4.120 6 C -0.147 4.147 7 C -0.115 4.115 8 C -0.194 4.194 9 O -0.335 6.335 10 Si 0.770 3.230 11 H -0.171 1.171 12 H -0.174 1.174 13 H -0.174 1.174 14 C 0.049 3.951 15 O -0.236 6.236 16 C 0.313 3.687 17 F -0.186 7.186 18 F -0.175 7.175 19 Si 1.239 2.761 20 C -0.549 4.549 21 C -0.560 4.560 22 C -0.556 4.556 23 H 0.122 0.878 24 H 0.116 0.884 25 H 0.161 0.839 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.137 0.863 29 H 0.220 0.780 30 H 0.188 0.812 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.739 -0.690 0.596 1.174 hybrid contribution 0.037 -0.123 0.462 0.480 sum 0.777 -0.813 1.058 1.544 Atomic orbital electron populations 1.24313 0.95410 1.01934 0.92886 1.27831 1.01078 1.07316 1.05635 1.19341 0.95245 0.92939 0.95389 1.21602 0.94821 0.98145 0.98836 1.21161 0.99589 0.93021 0.98214 1.21073 0.97044 1.00083 0.96479 1.20497 0.95858 0.96198 0.98967 1.25085 0.96913 0.97862 0.99522 1.86564 1.33864 1.74688 1.38356 0.85737 0.77177 0.78803 0.81321 1.17051 1.17446 1.17414 1.18362 0.90826 0.92763 0.93107 1.86677 1.32507 1.78821 1.25613 1.23595 0.87997 0.73093 0.84027 1.93033 1.64155 1.78450 1.83004 1.93101 1.92325 1.37359 1.94710 0.78374 0.66194 0.63534 0.67970 1.26116 1.05372 1.05034 1.18371 1.26343 1.15955 1.05009 1.08701 1.26141 1.09669 1.12501 1.07272 0.87778 0.88400 0.83873 0.85002 0.85364 0.86285 0.77976 0.81181 0.91167 0.91479 0.91044 0.90981 0.90891 0.90660 0.91145 0.90909 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.01 12.51 28.83 0.36 0.35 16 2 C -0.38 -0.11 2.68 -37.60 -0.10 -0.21 16 3 C -0.03 -0.05 5.15 -104.88 -0.54 -0.59 16 4 C -0.12 -0.06 8.20 -39.21 -0.32 -0.38 16 5 C -0.10 -0.01 10.03 -39.62 -0.40 -0.41 16 6 C -0.13 -0.10 8.65 -39.53 -0.34 -0.44 16 7 C -0.11 -0.22 5.09 -104.52 -0.53 -0.75 16 8 C -0.08 -0.11 2.34 36.00 0.08 -0.03 16 9 O -0.53 -0.87 12.88 -35.23 -0.45 -1.32 16 10 Si 0.95 0.39 25.50 -169.99 -4.34 -3.95 16 11 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 12 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 13 H -0.25 0.06 6.72 56.52 0.38 0.44 16 14 C 0.09 0.23 5.14 -38.81 -0.20 0.03 16 15 O -0.32 -0.66 7.96 -19.20 -0.15 -0.81 16 16 C 0.40 0.11 6.34 101.05 0.64 0.75 16 17 F -0.20 -0.35 14.75 2.25 0.03 -0.32 16 18 F -0.19 -0.20 12.93 2.25 0.03 -0.17 16 19 Si 1.05 -1.60 11.77 -169.99 -2.00 -3.60 16 20 C -0.44 0.07 7.34 101.05 0.74 0.81 16 21 C -0.45 0.66 7.08 101.05 0.72 1.37 16 22 C -0.45 0.62 8.45 101.05 0.85 1.47 16 23 H 0.10 -0.17 7.23 -52.49 -0.38 -0.55 16 24 H 0.10 0.11 7.58 -52.49 -0.40 -0.29 16 25 H 0.14 -0.19 4.97 -52.49 -0.26 -0.45 16 26 H 0.13 -0.29 8.06 -52.49 -0.42 -0.72 16 27 H 0.13 -0.09 4.87 -52.49 -0.26 -0.35 16 28 H 0.12 0.20 5.56 -51.93 -0.29 -0.09 16 29 H 0.37 -0.63 8.70 45.56 0.40 -0.23 16 30 H 0.17 -0.62 8.14 -51.93 -0.42 -1.04 16 31 H 0.07 0.06 7.57 -51.93 -0.39 -0.33 16 32 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 33 H 0.07 0.01 7.49 -51.93 -0.39 -0.38 16 34 H 0.07 -0.14 7.29 -51.93 -0.38 -0.52 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.09 6.59 -51.93 -0.34 -0.43 16 37 H 0.07 -0.10 7.63 -51.93 -0.40 -0.50 16 38 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 LS Contribution 319.25 15.07 4.81 4.81 Total: 0.00 -5.20 319.25 -5.51 -10.71 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: -4.40 Total: -7.34 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 0.96 Total: 1.98 kcal Atomic # 8 Polarization: -1.53 SS G_CDS: -0.61 Total: -2.13 kcal Atomic # 9 Polarization: -0.54 SS G_CDS: 0.06 Total: -0.48 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: -6.34 Total: -7.55 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -5.20 -5.51 -10.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.245 kcal (2) G-P(sol) polarization free energy of solvation -5.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds