Wall clock time and date at job start Mon Mar 8 2021 10:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32613 * 1 3 3 C 1.47741 * 119.99644 * 2 1 4 4 C 1.39464 * 120.16953 * 132.63513 * 3 2 1 5 5 C 1.38000 * 119.91006 * 179.97438 * 4 3 2 6 6 C 1.38373 * 120.25782 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.35046 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.95908 * 179.97438 * 7 6 5 9 9 O 1.42903 * 109.47129 * 255.38373 * 8 7 6 10 10 Si 1.86300 * 109.47137 * 15.38744 * 8 7 6 11 11 H 1.48495 * 109.47019 * 60.00229 * 10 8 7 12 12 H 1.48499 * 109.46854 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47320 * 299.99634 * 10 8 7 14 14 C 1.38512 * 120.07922 * 359.74299 * 7 6 5 15 15 O 1.35828 * 120.12815 * 180.27690 * 14 7 6 16 16 C 1.42902 * 116.99988 * 92.90240 * 15 14 7 17 17 F 1.39903 * 109.47084 * 305.84801 * 16 15 14 18 18 F 1.39896 * 109.47022 * 65.84736 * 16 15 14 19 19 Si 1.86795 * 120.00504 * 179.97438 * 2 1 3 20 20 C 1.86304 * 109.47089 * 94.04267 * 19 2 1 21 21 C 1.86297 * 109.47308 * 214.04338 * 19 2 1 22 22 C 1.86303 * 109.46961 * 334.04555 * 19 2 1 23 23 H 1.07999 * 119.99555 * 174.63067 * 1 2 3 24 24 H 1.08000 * 120.00529 * 354.35974 * 1 2 3 25 25 H 1.07997 * 120.04963 * 359.95731 * 4 3 2 26 26 H 1.07999 * 119.86938 * 180.02562 * 5 4 3 27 27 H 1.08001 * 119.82285 * 180.02562 * 6 5 4 28 28 H 1.09005 * 109.46944 * 135.39010 * 8 7 6 29 29 H 0.96703 * 113.99700 * 60.00233 * 9 8 7 30 30 H 1.09000 * 109.47283 * 185.85339 * 16 15 14 31 31 H 1.08997 * 109.47083 * 59.99727 * 20 19 2 32 32 H 1.09001 * 109.47265 * 180.02562 * 20 19 2 33 33 H 1.09004 * 109.46730 * 300.00260 * 20 19 2 34 34 H 1.09004 * 109.47141 * 62.97343 * 21 19 2 35 35 H 1.09004 * 109.47030 * 182.96923 * 21 19 2 36 36 H 1.08998 * 109.47388 * 302.97117 * 21 19 2 37 37 H 1.09002 * 109.47244 * 59.99912 * 22 19 2 38 38 H 1.09001 * 109.47078 * 179.97438 * 22 19 2 39 39 H 1.08999 * 109.46748 * 299.99712 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0648 1.2795 0.0000 4 6 3.1224 1.4782 0.8870 5 6 3.8090 2.6753 0.8821 6 6 3.4526 3.6799 -0.0003 7 6 2.4060 3.4944 -0.8841 8 6 2.0249 4.5946 -1.8408 9 8 0.8264 5.2267 -1.3869 10 14 3.3979 5.8513 -1.9207 11 1 4.6433 5.1944 -2.3925 12 1 3.0227 6.9351 -2.8639 13 1 3.6224 6.4258 -0.5699 14 6 1.7102 2.2968 -0.8947 15 8 0.6853 2.1114 -1.7665 16 6 1.0010 1.4979 -3.0179 17 9 2.0324 2.2101 -3.6394 18 9 1.4110 0.1782 -2.8000 19 14 2.2602 -1.6176 0.0007 20 6 2.6780 -2.0942 -1.7512 21 6 3.8311 -1.4272 0.9839 22 6 1.2031 -2.9448 0.7701 23 1 -0.5399 -0.9312 -0.0875 24 1 -0.5401 0.9307 0.0919 25 1 3.4037 0.6965 1.5771 26 1 4.6283 2.8283 1.5690 27 1 3.9950 4.6138 0.0016 28 1 1.8602 4.1729 -2.8324 29 1 0.9001 5.6250 -0.5088 30 1 0.1188 1.5033 -3.6581 31 1 3.2964 -1.3177 -2.2013 32 1 3.2227 -3.0384 -1.7508 33 1 1.7588 -2.2056 -2.3264 34 1 3.5853 -1.2002 2.0213 35 1 4.4017 -2.3550 0.9404 36 1 4.4256 -0.6151 0.5653 37 1 0.2840 -3.0562 0.1948 38 1 1.7480 -3.8888 0.7701 39 1 0.9587 -2.6659 1.7950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:11 Heat of formation + Delta-G solvation = -163.618101 kcal Electronic energy + Delta-G solvation = -24364.385663 eV Core-core repulsion = 20646.248454 eV Total energy + Delta-G solvation = -3718.137209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.106 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.07864 -48.20358 -41.28046 -38.39770 -37.73156 -34.90793 -32.22374 -30.47308 -29.49464 -28.45424 -28.25351 -27.11495 -26.38601 -24.12127 -22.55344 -20.57258 -19.89939 -19.11655 -18.73373 -18.19659 -17.06575 -16.79789 -16.70393 -16.02054 -15.68651 -15.39576 -15.03891 -14.85089 -14.70459 -14.49353 -14.42638 -14.10680 -13.90614 -13.83781 -13.63043 -13.49377 -13.28546 -13.13307 -13.09793 -12.95780 -12.83758 -12.72439 -12.40815 -12.20925 -11.85901 -11.70386 -11.22969 -10.90563 -10.78660 -10.47966 -10.29305 -9.81309 -9.27770 -0.09404 0.05370 1.08034 1.21816 1.35897 1.46182 1.81121 1.84279 1.99817 2.01345 2.21625 2.63751 2.69307 2.78703 3.45943 3.64092 3.66638 3.74071 3.82017 4.01434 4.24275 4.33696 4.40086 4.52149 4.77672 4.81544 4.83791 4.83974 4.86083 4.87310 4.88559 4.95311 5.13158 5.28647 5.34471 5.48998 5.54204 5.59411 5.66277 5.66703 5.82277 6.14874 6.64677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.388 4.388 3 C -0.043 4.043 4 C -0.122 4.122 5 C -0.104 4.104 6 C -0.137 4.137 7 C -0.128 4.128 8 C -0.088 4.088 9 O -0.546 6.546 10 Si 0.980 3.020 11 H -0.258 1.258 12 H -0.270 1.270 13 H -0.235 1.235 14 C 0.070 3.930 15 O -0.327 6.327 16 C 0.393 3.607 17 F -0.215 7.215 18 F -0.199 7.199 19 Si 1.094 2.906 20 C -0.455 4.455 21 C -0.460 4.460 22 C -0.454 4.454 23 H 0.120 0.880 24 H 0.082 0.918 25 H 0.160 0.840 26 H 0.157 0.843 27 H 0.142 0.858 28 H 0.110 0.890 29 H 0.386 0.614 30 H 0.208 0.792 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 -1.582 2.137 2.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.427 4.427 3 C -0.044 4.044 4 C -0.140 4.140 5 C -0.122 4.122 6 C -0.155 4.155 7 C -0.129 4.129 8 C -0.197 4.197 9 O -0.352 6.352 10 Si 0.803 3.197 11 H -0.182 1.182 12 H -0.195 1.195 13 H -0.158 1.158 14 C 0.027 3.973 15 O -0.246 6.246 16 C 0.304 3.696 17 F -0.197 7.197 18 F -0.181 7.181 19 Si 1.282 2.718 20 C -0.560 4.560 21 C -0.567 4.567 22 C -0.562 4.562 23 H 0.138 0.862 24 H 0.101 0.899 25 H 0.178 0.822 26 H 0.175 0.825 27 H 0.159 0.841 28 H 0.127 0.873 29 H 0.235 0.765 30 H 0.224 0.776 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.150 -1.072 1.512 2.182 hybrid contribution -0.112 -0.004 0.146 0.184 sum 1.038 -1.076 1.658 2.232 Atomic orbital electron populations 1.24375 0.95502 1.01987 0.93135 1.28242 1.01324 1.07809 1.05352 1.19610 0.95852 0.93333 0.95565 1.21882 0.94454 0.98850 0.98796 1.21502 0.99943 0.92556 0.98181 1.21299 0.96833 1.00948 0.96390 1.20656 0.96459 0.96247 0.99553 1.25183 0.97200 0.98267 0.99077 1.86518 1.34399 1.74882 1.39444 0.85273 0.75797 0.77317 0.81332 1.18178 1.19547 1.15836 1.18647 0.91379 0.93465 0.93806 1.86650 1.32815 1.79041 1.26126 1.24229 0.88797 0.72530 0.83996 1.93007 1.64893 1.78728 1.83111 1.93083 1.92497 1.37755 1.94766 0.77691 0.65642 0.62048 0.66391 1.26304 1.04997 1.04895 1.19848 1.26394 1.15895 1.05190 1.09255 1.26192 1.09841 1.12651 1.07489 0.86170 0.89935 0.82249 0.82536 0.84054 0.87254 0.76509 0.77595 0.92470 0.91047 0.91495 0.90077 0.90463 0.90902 0.90985 0.90561 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.09 12.51 66.66 0.83 0.74 16 2 C -0.39 -0.39 2.68 23.62 0.06 -0.33 16 3 C -0.04 -0.17 5.15 -20.03 -0.10 -0.27 16 4 C -0.12 -0.09 8.20 22.51 0.18 0.09 16 5 C -0.10 0.04 10.03 22.25 0.22 0.27 16 6 C -0.14 -0.21 8.65 22.30 0.19 -0.01 16 7 C -0.13 -0.60 5.09 -19.80 -0.10 -0.70 16 8 C -0.09 -0.33 2.34 71.23 0.17 -0.16 16 9 O -0.55 -2.34 12.88 -148.98 -1.92 -4.26 16 10 Si 0.98 1.13 25.50 68.60 1.75 2.88 16 11 H -0.26 -0.69 7.11 99.48 0.71 0.02 16 12 H -0.27 -1.12 7.11 99.48 0.71 -0.42 16 13 H -0.24 0.35 6.72 99.48 0.67 1.01 16 14 C 0.07 0.43 5.14 22.77 0.12 0.55 16 15 O -0.33 -1.79 7.96 -91.62 -0.73 -2.52 16 16 C 0.39 0.61 6.34 113.37 0.72 1.33 16 17 F -0.22 -1.05 14.75 44.97 0.66 -0.38 16 18 F -0.20 -0.62 12.93 44.97 0.58 -0.04 16 19 Si 1.09 -3.56 11.77 68.60 0.81 -2.75 16 20 C -0.45 -0.11 7.34 113.37 0.83 0.72 16 21 C -0.46 1.71 7.08 113.37 0.80 2.52 16 22 C -0.45 1.59 8.45 113.37 0.96 2.55 16 23 H 0.12 -0.37 7.23 -2.91 -0.02 -0.40 16 24 H 0.08 0.31 7.58 -2.91 -0.02 0.28 16 25 H 0.16 -0.54 4.97 -2.91 -0.01 -0.56 16 26 H 0.16 -0.95 8.06 -2.91 -0.02 -0.97 16 27 H 0.14 -0.29 4.87 -2.91 -0.01 -0.30 16 28 H 0.11 0.55 5.56 -2.38 -0.01 0.54 16 29 H 0.39 -1.02 8.70 -74.05 -0.64 -1.66 16 30 H 0.21 -1.44 8.14 -2.39 -0.02 -1.46 16 31 H 0.06 0.16 7.57 -2.39 -0.02 0.15 16 32 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 33 H 0.07 0.06 7.49 -2.39 -0.02 0.05 16 34 H 0.08 -0.44 7.29 -2.38 -0.02 -0.45 16 35 H 0.08 -0.33 7.96 -2.38 -0.02 -0.35 16 36 H 0.07 -0.21 6.59 -2.39 -0.02 -0.23 16 37 H 0.07 -0.26 7.63 -2.39 -0.02 -0.28 16 38 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 39 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 Total: 0.00 -12.72 319.25 7.19 -5.53 By element: Atomic # 1 Polarization: -6.88 SS G_CDS: 1.15 Total: -5.73 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 4.89 Total: 7.29 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -2.65 Total: -6.78 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 1.24 Total: -0.42 kcal Atomic # 14 Polarization: -2.43 SS G_CDS: 2.56 Total: 0.12 kcal Total: -12.72 7.19 -5.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.089 kcal (2) G-P(sol) polarization free energy of solvation -12.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds