Wall clock time and date at job start Mon Mar 8 2021 10:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32565 * 1 3 3 C 1.47816 * 120.00454 * 2 1 4 4 C 1.39514 * 120.13964 * 114.33737 * 3 2 1 5 5 C 1.37995 * 119.85443 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.92873 * 179.97438 * 5 4 3 7 7 O 1.42891 * 109.47398 * 300.00311 * 6 5 4 8 8 Si 1.86300 * 109.46724 * 179.97438 * 6 5 4 9 9 H 1.48498 * 109.47881 * 300.00297 * 8 6 5 10 10 H 1.48507 * 109.47031 * 60.00974 * 8 6 5 11 11 H 1.48504 * 109.46641 * 180.02562 * 8 6 5 12 12 C 1.38323 * 120.13856 * 359.97438 * 5 4 3 13 13 C 1.38356 * 120.28929 * 0.02562 * 12 5 4 14 14 C 1.37957 * 120.14234 * 359.74669 * 13 12 5 15 15 C 1.50703 * 120.07237 * 180.27051 * 14 13 12 16 16 Si 1.86810 * 119.99857 * 179.97438 * 2 1 3 17 17 C 1.86300 * 109.46924 * 92.24072 * 16 2 1 18 18 C 1.86303 * 109.46987 * 332.24392 * 16 2 1 19 19 C 1.86300 * 109.47291 * 212.24196 * 16 2 1 20 20 H 1.08001 * 119.99409 * 354.74311 * 1 2 3 21 21 H 1.07999 * 120.00002 * 174.74859 * 1 2 3 22 22 H 1.08004 * 120.07502 * 359.95622 * 4 3 2 23 23 H 1.09002 * 109.46732 * 60.00327 * 6 5 4 24 24 H 0.96699 * 114.00324 * 179.97438 * 7 6 5 25 25 H 1.08001 * 119.85088 * 180.02562 * 12 5 4 26 26 H 1.08009 * 119.93033 * 180.02562 * 13 12 5 27 27 H 1.08991 * 109.47651 * 264.74137 * 15 14 13 28 28 H 1.09001 * 109.47026 * 24.74376 * 15 14 13 29 29 H 1.09005 * 109.46707 * 144.74186 * 15 14 13 30 30 H 1.09001 * 109.47121 * 300.00130 * 17 16 2 31 31 H 1.09003 * 109.47062 * 59.99752 * 17 16 2 32 32 H 1.08999 * 109.46996 * 179.97438 * 17 16 2 33 33 H 1.08999 * 109.46946 * 179.97438 * 18 16 2 34 34 H 1.09001 * 109.46792 * 300.00037 * 18 16 2 35 35 H 1.09001 * 109.47346 * 59.99694 * 18 16 2 36 36 H 1.08998 * 109.46929 * 300.70409 * 19 16 2 37 37 H 1.08998 * 109.47093 * 60.70572 * 19 16 2 38 38 H 1.08998 * 109.46877 * 180.70119 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 2.8457 1.6381 1.0993 5 6 3.5337 2.8342 1.0928 6 6 4.3773 3.2229 2.2796 7 8 3.5529 3.3040 3.4439 8 14 5.1700 4.8787 1.9624 9 1 6.0269 4.7938 0.7526 10 1 4.1136 5.9007 1.7502 11 1 6.0017 5.2614 3.1317 12 6 3.4508 3.6772 -0.0007 13 6 2.6781 3.3280 -1.0940 14 6 1.9891 2.1329 -1.1020 15 6 1.1528 1.7513 -2.2962 16 14 2.2597 -1.6178 0.0007 17 6 2.6296 -2.1221 -1.7542 18 6 1.2240 -2.9324 0.8193 19 6 3.8568 -1.4125 0.9377 20 1 -0.5399 0.9314 0.0857 21 1 -0.5400 -0.9314 -0.0856 22 1 2.9114 0.9806 1.9537 23 1 5.1529 2.4730 2.4352 24 1 4.0307 3.5499 4.2479 25 1 3.9915 4.6121 -0.0010 26 1 2.6178 3.9905 -1.9449 27 1 0.1171 2.0429 -2.1227 28 1 1.5305 2.2617 -3.1822 29 1 1.2062 0.6731 -2.4475 30 1 1.6951 -2.2422 -2.3024 31 1 3.2355 -1.3529 -2.2332 32 1 3.1750 -3.0658 -1.7538 33 1 1.7688 -3.8765 0.8193 34 1 1.0075 -2.6373 1.8461 35 1 0.2895 -3.0526 0.2711 36 1 4.4572 -0.6347 0.4660 37 1 3.6399 -1.1297 1.9678 38 1 4.4075 -2.3531 0.9274 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:29 Heat of formation + Delta-G solvation = -43.951040 kcal Electronic energy + Delta-G solvation = -16604.742886 eV Core-core repulsion = 14149.384974 eV Total energy + Delta-G solvation = -2455.357912 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57884 -37.77473 -35.15242 -33.40681 -30.73908 -29.52273 -29.20545 -28.40036 -28.22755 -25.12281 -24.00667 -22.11779 -19.83551 -18.44438 -17.23412 -16.82122 -16.32426 -15.70840 -15.34371 -14.72982 -14.57554 -14.41684 -14.19149 -14.11197 -13.93864 -13.85214 -13.39554 -13.25172 -13.23477 -13.12911 -13.00490 -12.97215 -12.75261 -12.22510 -12.15110 -11.78128 -11.70212 -11.17131 -10.91111 -10.86954 -10.33897 -10.18397 -9.49623 -9.16283 0.29659 0.52412 1.12460 1.17366 1.44837 1.51540 1.77445 1.89234 1.92524 2.12927 2.57420 2.85183 3.47475 3.86642 3.94817 4.04379 4.13204 4.37930 4.44188 4.58950 4.69246 4.70714 4.75719 4.76362 4.77770 4.78909 4.80349 4.83115 4.89422 4.97646 5.12637 5.30362 5.34256 5.46033 5.53948 5.55507 5.57689 5.70434 5.75608 5.85562 6.16622 6.60516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.368 4.368 3 C -0.037 4.037 4 C -0.082 4.082 5 C -0.080 4.080 6 C -0.080 4.080 7 O -0.544 6.544 8 Si 0.945 3.055 9 H -0.250 1.250 10 H -0.248 1.248 11 H -0.258 1.258 12 C -0.128 4.128 13 C -0.112 4.112 14 C -0.077 4.077 15 C -0.116 4.116 16 Si 1.048 2.952 17 C -0.447 4.447 18 C -0.449 4.449 19 C -0.446 4.446 20 H 0.093 0.907 21 H 0.104 0.896 22 H 0.128 0.872 23 H 0.076 0.924 24 H 0.379 0.621 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 -1.372 -0.273 1.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.409 4.409 3 C -0.037 4.037 4 C -0.100 4.100 5 C -0.080 4.080 6 C -0.191 4.191 7 O -0.350 6.350 8 Si 0.769 3.231 9 H -0.174 1.174 10 H -0.172 1.172 11 H -0.182 1.182 12 C -0.145 4.145 13 C -0.130 4.130 14 C -0.077 4.077 15 C -0.172 4.172 16 Si 1.239 2.761 17 C -0.554 4.554 18 C -0.557 4.557 19 C -0.554 4.554 20 H 0.111 0.889 21 H 0.122 0.878 22 H 0.146 0.854 23 H 0.094 0.906 24 H 0.226 0.774 25 H 0.135 0.865 26 H 0.143 0.857 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.688 -0.669 -0.875 1.298 hybrid contribution 0.169 0.001 0.533 0.559 sum 0.856 -0.667 -0.341 1.138 Atomic orbital electron populations 1.24226 0.95469 1.01761 0.94785 1.27862 1.00869 1.07945 1.04255 1.18843 0.97357 0.93976 0.93511 1.21039 0.95528 0.95970 0.97439 1.19133 0.99541 0.95397 0.93905 1.24718 0.96834 1.10504 0.87038 1.86512 1.37524 1.93046 1.17914 0.85762 0.79395 0.76984 0.81006 1.17405 1.17158 1.18239 1.20940 1.00286 0.98913 0.94392 1.20876 0.97380 0.96457 0.98327 1.20018 0.98040 0.93863 0.95816 1.20831 0.98998 1.02462 0.94920 0.78376 0.66416 0.63482 0.67784 1.26097 1.05115 1.05568 1.18669 1.26153 1.09410 1.12355 1.07748 1.26137 1.16115 1.04677 1.08503 0.88888 0.87786 0.85390 0.90636 0.77386 0.86530 0.85712 0.91235 0.91722 0.90902 0.91214 0.91107 0.91105 0.90938 0.91034 0.91197 0.90977 0.91123 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.03 12.76 28.82 0.37 0.40 16 2 C -0.37 -0.05 3.09 -37.57 -0.12 -0.17 16 3 C -0.04 -0.07 4.90 -105.02 -0.51 -0.59 16 4 C -0.08 -0.20 8.26 -39.20 -0.32 -0.52 16 5 C -0.08 -0.20 5.42 -104.68 -0.57 -0.77 16 6 C -0.08 -0.05 2.81 36.01 0.10 0.05 16 7 O -0.54 -0.56 12.74 -35.23 -0.45 -1.01 16 8 Si 0.95 0.28 25.06 -169.99 -4.26 -3.98 16 9 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 10 H -0.25 -0.46 7.11 56.52 0.40 -0.05 16 11 H -0.26 -0.06 7.11 56.52 0.40 0.34 16 12 C -0.13 -0.31 8.67 -39.51 -0.34 -0.65 16 13 C -0.11 -0.22 9.67 -39.64 -0.38 -0.60 16 14 C -0.08 -0.15 5.90 -104.24 -0.61 -0.76 16 15 C -0.12 -0.02 8.93 36.01 0.32 0.31 16 16 Si 1.05 -1.80 12.26 -169.99 -2.08 -3.89 16 17 C -0.45 0.45 8.65 101.05 0.87 1.33 16 18 C -0.45 0.62 8.49 101.05 0.86 1.48 16 19 C -0.45 0.35 7.67 101.05 0.78 1.13 16 20 H 0.09 0.04 8.05 -52.49 -0.42 -0.39 16 21 H 0.10 -0.21 7.27 -52.49 -0.38 -0.59 16 22 H 0.13 0.21 7.21 -52.48 -0.38 -0.17 16 23 H 0.08 -0.09 7.96 -51.93 -0.41 -0.50 16 24 H 0.38 -1.31 8.74 45.56 0.40 -0.91 16 25 H 0.12 0.13 4.86 -52.49 -0.26 -0.12 16 26 H 0.12 0.01 8.06 -52.48 -0.42 -0.41 16 27 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 28 H 0.06 -0.04 8.05 -51.93 -0.42 -0.46 16 29 H 0.07 -0.02 7.24 -51.93 -0.38 -0.40 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 31 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 32 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 33 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 34 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 35 H 0.07 -0.12 7.65 -51.93 -0.40 -0.51 16 36 H 0.07 -0.01 7.83 -51.93 -0.41 -0.42 16 37 H 0.07 -0.05 7.44 -51.93 -0.39 -0.44 16 38 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 LS Contribution 312.89 15.07 4.72 4.72 Total: 0.00 -4.56 312.89 -7.20 -11.76 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: -5.56 Total: -8.22 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 0.44 Total: 0.63 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -0.45 Total: -1.01 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: -6.35 Total: -7.87 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -4.56 -7.20 -11.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.192 kcal (2) G-P(sol) polarization free energy of solvation -4.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds