Wall clock time and date at job start Mon Mar 8 2021 10:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32565 * 1 3 3 C 1.47816 * 120.00454 * 2 1 4 4 C 1.39514 * 120.13964 * 114.33737 * 3 2 1 5 5 C 1.37995 * 119.85443 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.92873 * 179.97438 * 5 4 3 7 7 O 1.42891 * 109.47398 * 300.00311 * 6 5 4 8 8 Si 1.86300 * 109.46724 * 179.97438 * 6 5 4 9 9 H 1.48498 * 109.47881 * 300.00297 * 8 6 5 10 10 H 1.48507 * 109.47031 * 60.00974 * 8 6 5 11 11 H 1.48504 * 109.46641 * 180.02562 * 8 6 5 12 12 C 1.38323 * 120.13856 * 359.97438 * 5 4 3 13 13 C 1.38356 * 120.28929 * 0.02562 * 12 5 4 14 14 C 1.37957 * 120.14234 * 359.74669 * 13 12 5 15 15 C 1.50703 * 120.07237 * 180.27051 * 14 13 12 16 16 Si 1.86810 * 119.99857 * 179.97438 * 2 1 3 17 17 C 1.86300 * 109.46924 * 92.24072 * 16 2 1 18 18 C 1.86303 * 109.46987 * 332.24392 * 16 2 1 19 19 C 1.86300 * 109.47291 * 212.24196 * 16 2 1 20 20 H 1.08001 * 119.99409 * 354.74311 * 1 2 3 21 21 H 1.07999 * 120.00002 * 174.74859 * 1 2 3 22 22 H 1.08004 * 120.07502 * 359.95622 * 4 3 2 23 23 H 1.09002 * 109.46732 * 60.00327 * 6 5 4 24 24 H 0.96699 * 114.00324 * 179.97438 * 7 6 5 25 25 H 1.08001 * 119.85088 * 180.02562 * 12 5 4 26 26 H 1.08009 * 119.93033 * 180.02562 * 13 12 5 27 27 H 1.08991 * 109.47651 * 264.74137 * 15 14 13 28 28 H 1.09001 * 109.47026 * 24.74376 * 15 14 13 29 29 H 1.09005 * 109.46707 * 144.74186 * 15 14 13 30 30 H 1.09001 * 109.47121 * 300.00130 * 17 16 2 31 31 H 1.09003 * 109.47062 * 59.99752 * 17 16 2 32 32 H 1.08999 * 109.46996 * 179.97438 * 17 16 2 33 33 H 1.08999 * 109.46946 * 179.97438 * 18 16 2 34 34 H 1.09001 * 109.46792 * 300.00037 * 18 16 2 35 35 H 1.09001 * 109.47346 * 59.99694 * 18 16 2 36 36 H 1.08998 * 109.46929 * 300.70409 * 19 16 2 37 37 H 1.08998 * 109.47093 * 60.70572 * 19 16 2 38 38 H 1.08998 * 109.46877 * 180.70119 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 2.8457 1.6381 1.0993 5 6 3.5337 2.8342 1.0928 6 6 4.3773 3.2229 2.2796 7 8 3.5529 3.3040 3.4439 8 14 5.1700 4.8787 1.9624 9 1 6.0269 4.7938 0.7526 10 1 4.1136 5.9007 1.7502 11 1 6.0017 5.2614 3.1317 12 6 3.4508 3.6772 -0.0007 13 6 2.6781 3.3280 -1.0940 14 6 1.9891 2.1329 -1.1020 15 6 1.1528 1.7513 -2.2962 16 14 2.2597 -1.6178 0.0007 17 6 2.6296 -2.1221 -1.7542 18 6 1.2240 -2.9324 0.8193 19 6 3.8568 -1.4125 0.9377 20 1 -0.5399 0.9314 0.0857 21 1 -0.5400 -0.9314 -0.0856 22 1 2.9114 0.9806 1.9537 23 1 5.1529 2.4730 2.4352 24 1 4.0307 3.5499 4.2479 25 1 3.9915 4.6121 -0.0010 26 1 2.6178 3.9905 -1.9449 27 1 0.1171 2.0429 -2.1227 28 1 1.5305 2.2617 -3.1822 29 1 1.2062 0.6731 -2.4475 30 1 1.6951 -2.2422 -2.3024 31 1 3.2355 -1.3529 -2.2332 32 1 3.1750 -3.0658 -1.7538 33 1 1.7688 -3.8765 0.8193 34 1 1.0075 -2.6373 1.8461 35 1 0.2895 -3.0526 0.2711 36 1 4.4572 -0.6347 0.4660 37 1 3.6399 -1.1297 1.9678 38 1 4.4075 -2.3531 0.9274 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:33:29 Heat of formation + Delta-G solvation = -34.713376 kcal Electronic energy + Delta-G solvation = -16604.342311 eV Core-core repulsion = 14149.384974 eV Total energy + Delta-G solvation = -2454.957337 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65690 -37.80565 -35.18501 -33.46331 -30.78101 -29.41726 -29.23969 -28.28250 -28.13940 -25.16546 -24.08262 -22.18553 -19.86349 -18.46819 -17.31004 -16.86850 -16.37805 -15.74208 -15.39318 -14.75053 -14.61219 -14.45246 -14.17547 -14.02655 -13.83363 -13.77321 -13.33755 -13.22240 -13.17004 -13.08353 -12.96671 -12.92028 -12.78946 -12.28261 -12.23021 -11.82495 -11.75927 -11.10406 -10.89699 -10.76454 -10.34635 -10.17113 -9.60031 -9.24049 0.20098 0.40442 1.13818 1.15654 1.41640 1.46406 1.86327 1.87381 2.03088 2.23882 2.63358 2.79742 3.48914 3.82313 3.90732 3.99790 4.05487 4.35427 4.42924 4.54169 4.75184 4.79574 4.80670 4.83989 4.84881 4.87202 4.88296 4.89113 4.90563 4.96691 5.07120 5.26907 5.30842 5.44736 5.57498 5.60601 5.65299 5.67043 5.70610 5.84197 6.09266 6.80057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.383 4.383 3 C -0.043 4.043 4 C -0.096 4.096 5 C -0.095 4.095 6 C -0.082 4.082 7 O -0.563 6.563 8 Si 0.977 3.023 9 H -0.258 1.258 10 H -0.274 1.274 11 H -0.253 1.253 12 C -0.145 4.145 13 C -0.122 4.122 14 C -0.091 4.091 15 C -0.114 4.114 16 Si 1.102 2.898 17 C -0.457 4.457 18 C -0.456 4.456 19 C -0.460 4.460 20 H 0.082 0.918 21 H 0.124 0.876 22 H 0.131 0.869 23 H 0.094 0.906 24 H 0.397 0.603 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -2.117 -0.260 2.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.422 4.422 3 C -0.043 4.043 4 C -0.114 4.114 5 C -0.095 4.095 6 C -0.192 4.192 7 O -0.371 6.371 8 Si 0.802 3.198 9 H -0.183 1.183 10 H -0.199 1.199 11 H -0.177 1.177 12 C -0.163 4.163 13 C -0.140 4.140 14 C -0.091 4.091 15 C -0.171 4.171 16 Si 1.290 2.710 17 C -0.564 4.564 18 C -0.564 4.564 19 C -0.567 4.567 20 H 0.100 0.900 21 H 0.142 0.858 22 H 0.149 0.851 23 H 0.112 0.888 24 H 0.247 0.753 25 H 0.140 0.860 26 H 0.157 0.843 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.634 -1.403 -0.842 1.755 hybrid contribution 0.175 0.261 0.536 0.622 sum 0.809 -1.142 -0.306 1.433 Atomic orbital electron populations 1.24365 0.95392 1.02239 0.94321 1.28236 1.01223 1.08095 1.04629 1.19118 0.97191 0.94679 0.93339 1.21194 0.96114 0.96248 0.97882 1.19450 0.99861 0.95551 0.94677 1.24766 0.96723 1.11210 0.86498 1.86461 1.38594 1.93223 1.18860 0.85314 0.78093 0.75792 0.80592 1.18258 1.19945 1.17714 1.21140 1.00944 0.99382 0.94829 1.21147 0.97233 0.96882 0.98748 1.20295 0.98375 0.93956 0.96520 1.20854 0.98803 1.02895 0.94526 0.77567 0.64934 0.61883 0.66647 1.26219 1.05280 1.05578 1.19346 1.26223 1.09834 1.12557 1.07767 1.26302 1.17054 1.04601 1.08698 0.89958 0.85808 0.85069 0.88850 0.75292 0.85980 0.84331 0.91030 0.90929 0.90387 0.90822 0.91741 0.90786 0.90620 0.91190 0.90605 0.91795 0.91230 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.08 12.76 66.67 0.85 0.94 16 2 C -0.38 -0.15 3.09 23.66 0.07 -0.08 16 3 C -0.04 -0.20 4.90 -20.12 -0.10 -0.30 16 4 C -0.10 -0.57 8.26 22.52 0.19 -0.38 16 5 C -0.10 -0.59 5.42 -19.90 -0.11 -0.69 16 6 C -0.08 -0.14 2.81 71.24 0.20 0.06 16 7 O -0.56 -1.31 12.74 -148.98 -1.90 -3.21 16 8 Si 0.98 1.05 25.06 68.60 1.72 2.77 16 9 H -0.26 -0.55 7.11 99.48 0.71 0.16 16 10 H -0.27 -1.42 7.11 99.48 0.71 -0.71 16 11 H -0.25 -0.01 7.11 99.48 0.71 0.70 16 12 C -0.15 -0.87 8.67 22.32 0.19 -0.68 16 13 C -0.12 -0.60 9.67 22.23 0.21 -0.38 16 14 C -0.09 -0.42 5.90 -19.61 -0.12 -0.54 16 15 C -0.11 -0.05 8.93 71.24 0.64 0.58 16 16 Si 1.10 -4.14 12.26 68.60 0.84 -3.29 16 17 C -0.46 1.11 8.65 113.37 0.98 2.09 16 18 C -0.46 1.68 8.49 113.37 0.96 2.64 16 19 C -0.46 0.63 7.67 113.37 0.87 1.50 16 20 H 0.08 0.11 8.05 -2.91 -0.02 0.08 16 21 H 0.12 -0.62 7.27 -2.91 -0.02 -0.64 16 22 H 0.13 0.55 7.21 -2.91 -0.02 0.53 16 23 H 0.09 -0.22 7.96 -2.39 -0.02 -0.24 16 24 H 0.40 -2.79 8.74 -74.06 -0.65 -3.44 16 25 H 0.12 0.45 4.86 -2.91 -0.01 0.44 16 26 H 0.14 0.12 8.06 -2.91 -0.02 0.09 16 27 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.07 -0.10 8.05 -2.39 -0.02 -0.12 16 29 H 0.08 -0.06 7.24 -2.38 -0.02 -0.07 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 32 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 33 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 34 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.07 -0.35 7.65 -2.39 -0.02 -0.37 16 36 H 0.06 0.02 7.83 -2.39 -0.02 0.01 16 37 H 0.07 -0.08 7.44 -2.39 -0.02 -0.10 16 38 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 Total: 0.00 -10.65 312.89 6.63 -4.02 By element: Atomic # 1 Polarization: -6.16 SS G_CDS: 1.13 Total: -5.03 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 4.85 Total: 4.75 kcal Atomic # 8 Polarization: -1.31 SS G_CDS: -1.90 Total: -3.21 kcal Atomic # 14 Polarization: -3.08 SS G_CDS: 2.56 Total: -0.52 kcal Total: -10.65 6.63 -4.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.698 kcal (2) G-P(sol) polarization free energy of solvation -10.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds