Wall clock time and date at job start Mon Mar 8 2021 10:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32567 * 1 3 3 C 1.47817 * 120.00126 * 2 1 4 4 C 1.39510 * 120.13888 * 114.43089 * 3 2 1 5 5 C 1.37995 * 119.85368 * 179.69592 * 4 3 2 6 6 C 1.38325 * 120.13962 * 0.58430 * 5 4 3 7 7 C 1.50701 * 119.85531 * 179.69594 * 6 5 4 8 8 O 1.42898 * 109.47046 * 120.02345 * 7 6 5 9 9 Si 1.86303 * 109.47172 * 0.02562 * 7 6 5 10 10 H 1.48497 * 109.46997 * 60.00245 * 9 7 6 11 11 H 1.48507 * 109.46877 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47375 * 300.00060 * 9 7 6 13 13 C 1.38358 * 120.28846 * 359.71444 * 6 5 4 14 14 C 1.37956 * 120.13988 * 359.97438 * 13 6 5 15 15 C 1.50708 * 120.07106 * 179.97438 * 14 13 6 16 16 Si 1.86800 * 119.99852 * 179.97438 * 2 1 3 17 17 C 1.86304 * 109.47120 * 0.02562 * 16 2 1 18 18 C 1.86300 * 109.47164 * 240.00116 * 16 2 1 19 19 C 1.86299 * 109.46862 * 119.99848 * 16 2 1 20 20 H 1.08009 * 119.99678 * 353.97684 * 1 2 3 21 21 H 1.07995 * 120.00352 * 173.96989 * 1 2 3 22 22 H 1.08003 * 120.07539 * 0.02562 * 4 3 2 23 23 H 1.08004 * 119.93147 * 180.27865 * 5 4 3 24 24 H 1.08997 * 109.46915 * 240.01996 * 7 6 5 25 25 H 0.96700 * 114.00013 * 299.99439 * 8 7 6 26 26 H 1.07997 * 119.93136 * 179.97438 * 13 6 5 27 27 H 1.08997 * 109.46897 * 269.36828 * 15 14 13 28 28 H 1.08992 * 109.46930 * 29.36977 * 15 14 13 29 29 H 1.09003 * 109.46836 * 149.36930 * 15 14 13 30 30 H 1.09004 * 109.46817 * 299.99802 * 17 16 2 31 31 H 1.09002 * 109.46820 * 59.99826 * 17 16 2 32 32 H 1.08993 * 109.47051 * 179.97438 * 17 16 2 33 33 H 1.08993 * 109.46985 * 180.02562 * 18 16 2 34 34 H 1.08998 * 109.46770 * 299.99826 * 18 16 2 35 35 H 1.08995 * 109.47118 * 59.99764 * 18 16 2 36 36 H 1.08989 * 109.47542 * 300.00130 * 19 16 2 37 37 H 1.09007 * 109.46967 * 60.00731 * 19 16 2 38 38 H 1.09002 * 109.46687 * 179.97438 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 2.8472 1.6372 1.0985 5 6 3.5397 2.8308 1.0896 6 6 3.4497 3.6779 -0.0002 7 6 4.2033 4.9830 -0.0002 8 8 5.1151 5.0065 -1.1002 9 14 5.1504 5.1532 1.5951 10 1 6.1102 4.0274 1.7235 11 1 5.8935 6.4390 1.5948 12 1 4.2029 5.1287 2.7383 13 6 2.6706 3.3324 -1.0901 14 6 1.9784 2.1391 -1.0964 15 6 1.1297 1.7646 -2.2842 16 14 2.2596 -1.6178 0.0007 17 6 1.0489 -3.0338 0.0006 18 6 3.3307 -1.7158 1.5219 19 6 3.3306 -1.7171 -1.5204 20 1 -0.5400 0.9302 0.0982 21 1 -0.5400 -0.9301 -0.0982 22 1 2.9150 0.9786 1.9517 23 1 4.1494 3.1064 1.9374 24 1 3.4988 5.8093 -0.0946 25 1 5.7725 4.2975 -1.0815 26 1 2.6042 3.9983 -1.9378 27 1 0.1141 2.1312 -2.1350 28 1 1.5487 2.2118 -3.1855 29 1 1.1125 0.6800 -2.3909 30 1 0.4220 -2.9758 0.8904 31 1 0.4226 -2.9762 -0.8897 32 1 1.5939 -3.9777 0.0005 33 1 3.8759 -2.6596 1.5221 34 1 4.0390 -0.8874 1.5215 35 1 2.7040 -1.6576 2.4118 36 1 2.7041 -1.6597 -2.4103 37 1 4.0391 -0.8886 -1.5207 38 1 3.8759 -2.6609 -1.5197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:44 Heat of formation + Delta-G solvation = -46.022322 kcal Electronic energy + Delta-G solvation = -16515.303171 eV Core-core repulsion = 14059.855441 eV Total energy + Delta-G solvation = -2455.447730 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.67716 -37.83794 -35.08592 -33.33129 -31.26805 -29.56307 -28.48916 -28.43408 -28.01876 -26.51352 -23.15165 -22.19359 -20.28671 -18.31435 -17.11619 -16.53843 -16.25328 -15.87617 -15.56891 -15.03243 -14.70472 -14.31295 -14.18704 -14.03768 -13.99250 -13.88405 -13.66109 -13.33547 -13.28839 -13.11884 -13.03993 -12.88038 -12.63376 -12.27137 -12.17626 -12.00152 -11.57661 -11.20314 -10.96001 -10.92271 -10.39181 -10.20908 -9.63953 -9.19694 0.20680 0.49589 1.05241 1.18346 1.44853 1.52918 1.72357 1.84380 1.92693 2.07986 2.52869 2.83963 3.49408 3.75522 3.91904 3.96414 4.07169 4.36635 4.52514 4.59478 4.64442 4.66483 4.70718 4.72182 4.74596 4.76733 4.77158 4.77994 4.82230 4.93245 5.07820 5.24658 5.27534 5.41610 5.48725 5.53897 5.56169 5.59752 5.69640 5.79950 6.11034 6.57334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.370 4.370 3 C -0.030 4.030 4 C -0.112 4.112 5 C -0.128 4.128 6 C -0.124 4.124 7 C -0.079 4.079 8 O -0.539 6.539 9 Si 0.949 3.051 10 H -0.251 1.251 11 H -0.255 1.255 12 H -0.252 1.252 13 C -0.088 4.088 14 C -0.080 4.080 15 C -0.116 4.116 16 Si 1.049 2.951 17 C -0.450 4.450 18 C -0.449 4.449 19 C -0.447 4.447 20 H 0.093 0.907 21 H 0.106 0.894 22 H 0.128 0.872 23 H 0.118 0.882 24 H 0.116 0.884 25 H 0.376 0.624 26 H 0.126 0.874 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 -2.266 0.284 2.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.411 4.411 3 C -0.030 4.030 4 C -0.130 4.130 5 C -0.146 4.146 6 C -0.125 4.125 7 C -0.190 4.190 8 O -0.344 6.344 9 Si 0.772 3.228 10 H -0.175 1.175 11 H -0.179 1.179 12 H -0.175 1.175 13 C -0.106 4.106 14 C -0.080 4.080 15 C -0.172 4.172 16 Si 1.241 2.759 17 C -0.558 4.558 18 C -0.557 4.557 19 C -0.554 4.554 20 H 0.111 0.889 21 H 0.124 0.876 22 H 0.146 0.854 23 H 0.136 0.864 24 H 0.134 0.866 25 H 0.223 0.777 26 H 0.144 0.856 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.678 -1.590 0.893 1.946 hybrid contribution -0.069 -0.338 -0.139 0.372 sum -0.748 -1.929 0.754 2.202 Atomic orbital electron populations 1.24282 0.95459 1.01897 0.94663 1.27869 1.00899 1.08012 1.04356 1.18861 0.96932 0.93718 0.93504 1.21194 0.97024 0.96675 0.98136 1.20931 1.00671 0.95165 0.97844 1.20272 1.00017 0.96887 0.95298 1.24956 0.95734 0.97378 1.00916 1.86507 1.45922 1.55202 1.46780 0.85692 0.79994 0.81106 0.75963 1.17511 1.17935 1.17543 1.20808 0.95763 0.96072 0.97978 1.20033 0.98200 0.93868 0.95893 1.20832 0.98824 1.02483 0.95100 0.78363 0.66303 0.63367 0.67900 1.26155 1.11361 1.13722 1.04548 1.26147 1.09775 1.04684 1.15067 1.26081 1.09792 1.04446 1.15116 0.88903 0.87601 0.85398 0.86416 0.86587 0.77702 0.85583 0.91257 0.91610 0.90970 0.91063 0.91070 0.90854 0.90983 0.90969 0.91113 0.91210 0.91146 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.12 12.62 28.83 0.36 0.49 16 2 C -0.37 0.21 3.06 -37.57 -0.11 0.10 16 3 C -0.03 -0.03 4.90 -105.02 -0.51 -0.55 16 4 C -0.11 -0.12 9.21 -39.20 -0.36 -0.48 16 5 C -0.13 -0.16 8.65 -39.64 -0.34 -0.50 16 6 C -0.12 -0.16 5.40 -104.55 -0.56 -0.73 16 7 C -0.08 -0.03 2.82 36.01 0.10 0.08 16 8 O -0.54 -0.50 12.76 -35.23 -0.45 -0.95 16 9 Si 0.95 0.09 25.06 -169.99 -4.26 -4.17 16 10 H -0.25 -0.06 7.11 56.52 0.40 0.35 16 11 H -0.26 -0.37 7.11 56.52 0.40 0.03 16 12 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 13 C -0.09 -0.14 9.24 -39.64 -0.37 -0.51 16 14 C -0.08 -0.11 5.90 -104.23 -0.61 -0.72 16 15 C -0.12 0.01 9.02 36.01 0.32 0.33 16 16 Si 1.05 -2.30 12.33 -169.99 -2.10 -4.40 16 17 C -0.45 0.87 7.88 101.05 0.80 1.67 16 18 C -0.45 0.65 8.20 101.05 0.83 1.48 16 19 C -0.45 0.44 8.65 101.05 0.87 1.32 16 20 H 0.09 -0.04 8.05 -52.48 -0.42 -0.46 16 21 H 0.11 -0.26 7.07 -52.49 -0.37 -0.63 16 22 H 0.13 -0.05 7.06 -52.48 -0.37 -0.43 16 23 H 0.12 0.00 4.86 -52.48 -0.25 -0.25 16 24 H 0.12 -0.04 7.96 -51.93 -0.41 -0.45 16 25 H 0.38 -0.81 8.70 45.56 0.40 -0.42 16 26 H 0.13 0.13 8.06 -52.49 -0.42 -0.29 16 27 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.06 -0.03 8.08 -51.93 -0.42 -0.45 16 29 H 0.07 -0.04 6.95 -51.93 -0.36 -0.40 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 34 H 0.07 -0.08 7.23 -51.93 -0.38 -0.46 16 35 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 36 H 0.07 -0.07 7.96 -51.94 -0.41 -0.48 16 37 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 38 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 LS Contribution 312.90 15.07 4.72 4.72 Total: 0.00 -3.85 312.90 -7.22 -11.07 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: -5.54 Total: -8.23 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 0.41 Total: 1.96 kcal Atomic # 8 Polarization: -0.50 SS G_CDS: -0.45 Total: -0.95 kcal Atomic # 14 Polarization: -2.21 SS G_CDS: -6.36 Total: -8.57 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -3.85 -7.22 -11.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.950 kcal (2) G-P(sol) polarization free energy of solvation -3.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds