Wall clock time and date at job start Mon Mar 8 2021 10:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32567 * 1 3 3 C 1.47817 * 120.00126 * 2 1 4 4 C 1.39510 * 120.13888 * 114.43089 * 3 2 1 5 5 C 1.37995 * 119.85368 * 179.69592 * 4 3 2 6 6 C 1.38325 * 120.13962 * 0.58430 * 5 4 3 7 7 C 1.50701 * 119.85531 * 179.69594 * 6 5 4 8 8 O 1.42898 * 109.47046 * 120.02345 * 7 6 5 9 9 Si 1.86303 * 109.47172 * 0.02562 * 7 6 5 10 10 H 1.48497 * 109.46997 * 60.00245 * 9 7 6 11 11 H 1.48507 * 109.46877 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47375 * 300.00060 * 9 7 6 13 13 C 1.38358 * 120.28846 * 359.71444 * 6 5 4 14 14 C 1.37956 * 120.13988 * 359.97438 * 13 6 5 15 15 C 1.50708 * 120.07106 * 179.97438 * 14 13 6 16 16 Si 1.86800 * 119.99852 * 179.97438 * 2 1 3 17 17 C 1.86304 * 109.47120 * 0.02562 * 16 2 1 18 18 C 1.86300 * 109.47164 * 240.00116 * 16 2 1 19 19 C 1.86299 * 109.46862 * 119.99848 * 16 2 1 20 20 H 1.08009 * 119.99678 * 353.97684 * 1 2 3 21 21 H 1.07995 * 120.00352 * 173.96989 * 1 2 3 22 22 H 1.08003 * 120.07539 * 0.02562 * 4 3 2 23 23 H 1.08004 * 119.93147 * 180.27865 * 5 4 3 24 24 H 1.08997 * 109.46915 * 240.01996 * 7 6 5 25 25 H 0.96700 * 114.00013 * 299.99439 * 8 7 6 26 26 H 1.07997 * 119.93136 * 179.97438 * 13 6 5 27 27 H 1.08997 * 109.46897 * 269.36828 * 15 14 13 28 28 H 1.08992 * 109.46930 * 29.36977 * 15 14 13 29 29 H 1.09003 * 109.46836 * 149.36930 * 15 14 13 30 30 H 1.09004 * 109.46817 * 299.99802 * 17 16 2 31 31 H 1.09002 * 109.46820 * 59.99826 * 17 16 2 32 32 H 1.08993 * 109.47051 * 179.97438 * 17 16 2 33 33 H 1.08993 * 109.46985 * 180.02562 * 18 16 2 34 34 H 1.08998 * 109.46770 * 299.99826 * 18 16 2 35 35 H 1.08995 * 109.47118 * 59.99764 * 18 16 2 36 36 H 1.08989 * 109.47542 * 300.00130 * 19 16 2 37 37 H 1.09007 * 109.46967 * 60.00731 * 19 16 2 38 38 H 1.09002 * 109.46687 * 179.97438 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 2.8472 1.6372 1.0985 5 6 3.5397 2.8308 1.0896 6 6 3.4497 3.6779 -0.0002 7 6 4.2033 4.9830 -0.0002 8 8 5.1151 5.0065 -1.1002 9 14 5.1504 5.1532 1.5951 10 1 6.1102 4.0274 1.7235 11 1 5.8935 6.4390 1.5948 12 1 4.2029 5.1287 2.7383 13 6 2.6706 3.3324 -1.0901 14 6 1.9784 2.1391 -1.0964 15 6 1.1297 1.7646 -2.2842 16 14 2.2596 -1.6178 0.0007 17 6 1.0489 -3.0338 0.0006 18 6 3.3307 -1.7158 1.5219 19 6 3.3306 -1.7171 -1.5204 20 1 -0.5400 0.9302 0.0982 21 1 -0.5400 -0.9301 -0.0982 22 1 2.9150 0.9786 1.9517 23 1 4.1494 3.1064 1.9374 24 1 3.4988 5.8093 -0.0946 25 1 5.7725 4.2975 -1.0815 26 1 2.6042 3.9983 -1.9378 27 1 0.1141 2.1312 -2.1350 28 1 1.5487 2.2118 -3.1855 29 1 1.1125 0.6800 -2.3909 30 1 0.4220 -2.9758 0.8904 31 1 0.4226 -2.9762 -0.8897 32 1 1.5939 -3.9777 0.0005 33 1 3.8759 -2.6596 1.5221 34 1 4.0390 -0.8874 1.5215 35 1 2.7040 -1.6576 2.4118 36 1 2.7041 -1.6597 -2.4103 37 1 4.0391 -0.8886 -1.5207 38 1 3.8759 -2.6609 -1.5197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:34:44 Heat of formation + Delta-G solvation = -35.961735 kcal Electronic energy + Delta-G solvation = -16514.866911 eV Core-core repulsion = 14059.855441 eV Total energy + Delta-G solvation = -2455.011470 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71069 -37.86798 -35.07564 -33.34726 -31.26031 -29.42339 -28.34207 -28.32153 -28.02641 -26.52190 -23.18935 -22.19978 -20.27173 -18.35229 -17.11357 -16.56499 -16.27979 -15.91973 -15.52503 -15.06893 -14.69237 -14.28039 -14.07761 -14.01083 -13.87968 -13.79398 -13.61254 -13.24172 -13.16494 -12.99147 -12.93493 -12.87487 -12.63442 -12.29963 -12.20562 -12.04889 -11.60974 -11.10008 -10.90615 -10.77183 -10.40096 -10.15340 -9.70469 -9.21608 0.17211 0.42519 1.12372 1.17117 1.42409 1.49050 1.85799 1.87739 2.03065 2.21818 2.63288 2.81627 3.52015 3.73534 3.91504 3.97446 4.04255 4.34194 4.50655 4.58017 4.77748 4.78378 4.81006 4.81737 4.82245 4.86183 4.86659 4.88059 4.89228 4.96344 5.06533 5.25570 5.27834 5.49751 5.55329 5.58364 5.64443 5.66222 5.70071 5.83402 6.08561 6.67453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.383 4.383 3 C -0.037 4.037 4 C -0.122 4.122 5 C -0.139 4.139 6 C -0.131 4.131 7 C -0.079 4.079 8 O -0.553 6.553 9 Si 0.982 3.018 10 H -0.251 1.251 11 H -0.275 1.275 12 H -0.259 1.259 13 C -0.101 4.101 14 C -0.092 4.092 15 C -0.115 4.115 16 Si 1.104 2.896 17 C -0.457 4.457 18 C -0.462 4.462 19 C -0.461 4.461 20 H 0.084 0.916 21 H 0.123 0.877 22 H 0.140 0.860 23 H 0.127 0.873 24 H 0.120 0.880 25 H 0.388 0.612 26 H 0.126 0.874 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 -3.037 0.444 3.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.423 4.423 3 C -0.037 4.037 4 C -0.140 4.140 5 C -0.157 4.157 6 C -0.131 4.131 7 C -0.189 4.189 8 O -0.360 6.360 9 Si 0.807 3.193 10 H -0.175 1.175 11 H -0.201 1.201 12 H -0.183 1.183 13 C -0.119 4.119 14 C -0.092 4.092 15 C -0.172 4.172 16 Si 1.292 2.708 17 C -0.565 4.565 18 C -0.569 4.569 19 C -0.568 4.568 20 H 0.102 0.898 21 H 0.141 0.859 22 H 0.158 0.842 23 H 0.145 0.855 24 H 0.138 0.862 25 H 0.237 0.763 26 H 0.144 0.856 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.009 -2.363 1.043 2.773 hybrid contribution 0.040 -0.087 -0.200 0.222 sum -0.969 -2.450 0.843 2.766 Atomic orbital electron populations 1.24415 0.95374 1.02364 0.94060 1.28179 1.01218 1.08059 1.04837 1.19098 0.96962 0.94326 0.93335 1.21437 0.97017 0.96903 0.98657 1.21117 1.01011 0.95378 0.98177 1.20389 1.00122 0.97273 0.95317 1.25006 0.95789 0.97144 1.00964 1.86470 1.46402 1.56005 1.47120 0.85226 0.79119 0.79786 0.75199 1.17517 1.20052 1.18342 1.20930 0.96263 0.96437 0.98261 1.20265 0.98428 0.93954 0.96559 1.20854 0.98752 1.02869 0.94714 0.77534 0.65026 0.62051 0.66236 1.26218 1.11569 1.13762 1.04929 1.26292 1.10081 1.04650 1.15850 1.26274 1.10076 1.04153 1.16254 0.89754 0.85859 0.84198 0.85547 0.86227 0.76329 0.85568 0.90950 0.91346 0.90425 0.90696 0.90698 0.90705 0.90759 0.91384 0.90851 0.91225 0.92131 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.30 12.62 66.67 0.84 1.14 16 2 C -0.38 0.53 3.06 23.66 0.07 0.60 16 3 C -0.04 -0.09 4.90 -20.12 -0.10 -0.19 16 4 C -0.12 -0.30 9.21 22.52 0.21 -0.10 16 5 C -0.14 -0.40 8.65 22.23 0.19 -0.21 16 6 C -0.13 -0.43 5.40 -19.81 -0.11 -0.53 16 7 C -0.08 -0.10 2.82 71.24 0.20 0.10 16 8 O -0.55 -1.30 12.76 -148.98 -1.90 -3.20 16 9 Si 0.98 0.55 25.06 68.60 1.72 2.27 16 10 H -0.25 -0.09 7.11 99.48 0.71 0.61 16 11 H -0.28 -1.03 7.11 99.48 0.71 -0.32 16 12 H -0.26 -0.43 7.11 99.48 0.71 0.28 16 13 C -0.10 -0.41 9.24 22.23 0.21 -0.21 16 14 C -0.09 -0.31 5.90 -19.61 -0.12 -0.43 16 15 C -0.12 -0.02 9.02 71.24 0.64 0.62 16 16 Si 1.10 -5.37 12.33 68.60 0.85 -4.52 16 17 C -0.46 2.28 7.88 113.37 0.89 3.17 16 18 C -0.46 1.49 8.20 113.37 0.93 2.42 16 19 C -0.46 0.88 8.65 113.37 0.98 1.86 16 20 H 0.08 -0.06 8.05 -2.91 -0.02 -0.09 16 21 H 0.12 -0.76 7.07 -2.91 -0.02 -0.78 16 22 H 0.14 -0.12 7.06 -2.91 -0.02 -0.14 16 23 H 0.13 0.04 4.86 -2.91 -0.01 0.02 16 24 H 0.12 0.00 7.96 -2.39 -0.02 -0.02 16 25 H 0.39 -1.49 8.70 -74.06 -0.64 -2.14 16 26 H 0.13 0.40 8.06 -2.91 -0.02 0.38 16 27 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.07 -0.04 8.08 -2.39 -0.02 -0.06 16 29 H 0.08 -0.09 6.95 -2.39 -0.02 -0.11 16 30 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 31 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 32 H 0.07 -0.37 7.96 -2.39 -0.02 -0.38 16 33 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 34 H 0.07 -0.15 7.23 -2.39 -0.02 -0.17 16 35 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 37 H 0.06 0.01 7.96 -2.38 -0.02 -0.01 16 38 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 Total: 0.00 -8.60 312.90 6.64 -1.96 By element: Atomic # 1 Polarization: -5.89 SS G_CDS: 1.13 Total: -4.76 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 4.85 Total: 8.26 kcal Atomic # 8 Polarization: -1.30 SS G_CDS: -1.90 Total: -3.20 kcal Atomic # 14 Polarization: -4.82 SS G_CDS: 2.56 Total: -2.26 kcal Total: -8.60 6.64 -1.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.005 kcal (2) G-P(sol) polarization free energy of solvation -8.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -1.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds