Wall clock time and date at job start Mon Mar 8 2021 10:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32570 * 1 3 3 C 1.47821 * 119.99560 * 2 1 4 4 C 1.39431 * 120.11184 * 245.66827 * 3 2 1 5 5 C 1.38503 * 119.80067 * 179.97438 * 4 3 2 6 6 O 1.35908 * 119.98777 * 180.02562 * 5 4 3 7 7 C 1.42895 * 117.00073 * 179.97438 * 6 5 4 8 8 C 1.38806 * 120.02537 * 359.97438 * 5 4 3 9 9 C 1.38270 * 120.23683 * 359.79001 * 8 5 4 10 10 C 1.37982 * 120.19556 * 0.46574 * 9 8 5 11 11 C 1.50702 * 120.01780 * 179.79026 * 10 9 8 12 12 O 1.42901 * 109.46869 * 255.31486 * 11 10 9 13 13 Si 1.86301 * 109.47005 * 15.30780 * 11 10 9 14 14 H 1.48505 * 109.46969 * 60.00269 * 13 11 10 15 15 H 1.48499 * 109.47378 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47163 * 300.00670 * 13 11 10 17 17 Si 1.86793 * 120.00114 * 180.02562 * 2 1 3 18 18 C 1.86308 * 109.46934 * 265.02482 * 17 2 1 19 19 C 1.86295 * 109.47257 * 25.02346 * 17 2 1 20 20 C 1.86294 * 109.47163 * 145.02855 * 17 2 1 21 21 H 1.07996 * 120.00209 * 5.04975 * 1 2 3 22 22 H 1.07997 * 119.99634 * 185.05692 * 1 2 3 23 23 H 1.08007 * 120.10455 * 359.96279 * 4 3 2 24 24 H 1.08999 * 109.47290 * 180.02562 * 7 6 5 25 25 H 1.09001 * 109.47157 * 300.00354 * 7 6 5 26 26 H 1.09001 * 109.47239 * 60.00192 * 7 6 5 27 27 H 1.08002 * 119.88171 * 180.02562 * 8 5 4 28 28 H 1.07994 * 119.90631 * 180.23201 * 9 8 5 29 29 H 1.08993 * 109.47474 * 135.31030 * 11 10 9 30 30 H 0.96699 * 114.01004 * 59.99459 * 12 11 10 31 31 H 1.09002 * 109.47172 * 60.00342 * 18 17 2 32 32 H 1.08999 * 109.47096 * 179.97438 * 18 17 2 33 33 H 1.08996 * 109.47147 * 300.00284 * 18 17 2 34 34 H 1.09002 * 109.47129 * 60.00436 * 19 17 2 35 35 H 1.08999 * 109.47296 * 180.02562 * 19 17 2 36 36 H 1.09002 * 109.47419 * 300.00007 * 19 17 2 37 37 H 1.09003 * 109.47598 * 64.97746 * 20 17 2 38 38 H 1.09000 * 109.47084 * 184.98143 * 20 17 2 39 39 H 1.09000 * 109.46905 * 304.97590 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 2.8448 1.6376 -1.0990 5 6 3.5341 2.8389 -1.0924 6 8 4.2952 3.1913 -2.1618 7 6 4.9782 4.4442 -2.0873 8 6 3.4471 3.6836 0.0056 9 6 2.6700 3.3327 1.0942 10 6 1.9835 2.1358 1.0998 11 6 1.1414 1.7552 2.2903 12 8 1.8192 0.7545 3.0527 13 14 0.8546 3.2577 3.3538 14 1 0.1503 4.2978 2.5615 15 1 0.0254 2.8827 4.5272 16 1 2.1598 3.7904 3.8205 17 14 2.2597 -1.6177 -0.0007 18 6 2.7021 -2.0800 1.7490 19 6 1.1919 -2.9509 -0.7443 20 6 3.8166 -1.4353 -1.0074 21 1 -0.5400 0.9316 -0.0823 22 1 -0.5399 -0.9317 0.0824 23 1 2.9116 0.9796 -1.9529 24 1 5.5471 4.6029 -3.0034 25 1 4.2514 5.2477 -1.9676 26 1 5.6567 4.4381 -1.2343 27 1 3.9852 4.6200 0.0082 28 1 2.6031 3.9957 1.9440 29 1 0.1834 1.3643 1.9477 30 1 2.6812 1.0337 3.3904 31 1 1.7912 -2.1867 2.3380 32 1 3.2467 -3.0242 1.7486 33 1 3.3268 -1.3000 2.1841 34 1 0.9331 -2.6804 -1.7680 35 1 1.7368 -3.8950 -0.7443 36 1 0.2810 -3.0576 -0.1552 37 1 4.4805 -0.7189 -0.5234 38 1 4.3164 -2.4011 -1.0816 39 1 3.5639 -1.0793 -2.0061 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:49 Heat of formation + Delta-G solvation = -71.351831 kcal Electronic energy + Delta-G solvation = -18910.430262 eV Core-core repulsion = 16135.201970 eV Total energy + Delta-G solvation = -2775.228292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21899 -39.25791 -37.05366 -34.67609 -32.18700 -30.52716 -29.40574 -28.68567 -28.23662 -28.08305 -26.12659 -23.96045 -22.44022 -20.69831 -18.44526 -18.21973 -17.18930 -16.80157 -16.62205 -16.07596 -15.79012 -15.29402 -14.94241 -14.66196 -14.47845 -14.02820 -13.88610 -13.76820 -13.63189 -13.42301 -13.32923 -13.17387 -13.08777 -12.94914 -12.85143 -12.29052 -12.22574 -12.03597 -11.86123 -11.58489 -11.06247 -10.84153 -10.79548 -10.27423 -10.17635 -9.49086 -9.04282 0.22979 0.40524 1.13259 1.21299 1.41446 1.53807 1.84407 1.93222 1.97004 2.21512 2.35514 2.64607 2.83625 3.60178 3.74505 3.87329 3.92659 4.13778 4.20408 4.25300 4.49440 4.50270 4.55910 4.71730 4.75546 4.77104 4.83082 4.86380 4.89178 4.98128 5.00983 5.02166 5.20930 5.33404 5.39000 5.53180 5.58010 5.64302 5.77684 5.78874 5.88086 6.43996 6.65585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.361 4.361 3 C 0.034 3.966 4 C -0.150 4.150 5 C 0.137 3.863 6 O -0.316 6.316 7 C 0.026 3.974 8 C -0.212 4.212 9 C -0.084 4.084 10 C -0.155 4.155 11 C -0.071 4.071 12 O -0.530 6.530 13 Si 0.940 3.060 14 H -0.251 1.251 15 H -0.254 1.254 16 H -0.253 1.253 17 Si 1.052 2.948 18 C -0.436 4.436 19 C -0.450 4.450 20 C -0.447 4.447 21 H 0.093 0.907 22 H 0.107 0.893 23 H 0.136 0.864 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.372 0.628 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 0.989 -0.015 1.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.402 4.402 3 C 0.033 3.967 4 C -0.169 4.169 5 C 0.091 3.909 6 O -0.230 6.230 7 C -0.069 4.069 8 C -0.230 4.230 9 C -0.102 4.102 10 C -0.156 4.156 11 C -0.182 4.182 12 O -0.335 6.335 13 Si 0.763 3.237 14 H -0.175 1.175 15 H -0.177 1.177 16 H -0.177 1.177 17 Si 1.243 2.757 18 C -0.544 4.544 19 C -0.558 4.558 20 C -0.555 4.555 21 H 0.111 0.889 22 H 0.125 0.875 23 H 0.154 0.846 24 H 0.120 0.880 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.134 0.866 30 H 0.219 0.781 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.139 1.357 0.175 1.375 hybrid contribution 0.618 0.570 -0.124 0.850 sum 0.756 1.927 0.051 2.071 Atomic orbital electron populations 1.24170 0.95332 1.01875 0.95255 1.27840 1.00926 1.07687 1.03722 1.18531 0.93949 0.92738 0.91457 1.20565 1.00232 0.96001 1.00099 1.18976 0.91471 0.93908 0.86504 1.86096 1.59822 1.38700 1.38348 1.23096 0.96238 0.83787 1.03771 1.21172 1.05411 1.01481 0.94972 1.20809 0.95764 0.95765 0.97862 1.20218 1.02602 0.95238 0.97504 1.24870 0.98088 1.01608 0.93618 1.86541 1.36185 1.40063 1.70680 0.85868 0.81147 0.76760 0.79906 1.17492 1.17743 1.17711 0.78334 0.66071 0.63187 0.68075 1.25986 1.05578 1.04721 1.18129 1.26171 1.09840 1.12679 1.07075 1.26167 1.15721 1.04530 1.09060 0.88861 0.87534 0.84647 0.88024 0.92537 0.92494 0.85314 0.85843 0.86598 0.78145 0.90951 0.91838 0.90878 0.91163 0.90960 0.91163 0.91098 0.91198 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.05 11.81 28.83 0.34 0.39 16 2 C -0.36 -0.07 3.54 -37.57 -0.13 -0.20 16 3 C 0.03 0.05 4.90 -105.03 -0.51 -0.47 16 4 C -0.15 -0.31 8.80 -39.04 -0.34 -0.66 16 5 C 0.14 0.32 6.68 -39.27 -0.26 0.06 16 6 O -0.32 -0.73 10.49 -19.45 -0.20 -0.93 16 7 C 0.03 -0.03 9.81 101.05 0.99 0.96 16 8 C -0.21 -0.26 9.03 -39.36 -0.36 -0.62 16 9 C -0.08 -0.08 8.65 -39.66 -0.34 -0.43 16 10 C -0.16 -0.18 5.27 -104.22 -0.55 -0.73 16 11 C -0.07 -0.01 2.12 36.01 0.08 0.07 16 12 O -0.53 -0.02 12.73 -35.23 -0.45 -0.47 16 13 Si 0.94 0.02 25.51 -169.99 -4.34 -4.31 16 14 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 15 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 16 H -0.25 0.04 6.72 56.52 0.38 0.42 16 17 Si 1.05 -1.26 12.28 -169.99 -2.09 -3.35 16 18 C -0.44 0.07 8.65 101.05 0.87 0.94 16 19 C -0.45 0.43 8.42 101.05 0.85 1.28 16 20 C -0.45 0.11 7.73 101.05 0.78 0.89 16 21 H 0.09 -0.04 7.87 -52.49 -0.41 -0.45 16 22 H 0.11 -0.19 7.19 -52.49 -0.38 -0.57 16 23 H 0.14 0.18 6.98 -52.48 -0.37 -0.19 16 24 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 25 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 26 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 27 H 0.13 -0.08 6.28 -52.49 -0.33 -0.41 16 28 H 0.12 -0.05 4.88 -52.49 -0.26 -0.30 16 29 H 0.12 -0.02 5.84 -51.93 -0.30 -0.32 16 30 H 0.37 -1.02 8.70 45.56 0.40 -0.63 16 31 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 32 H 0.06 -0.03 7.96 -51.93 -0.41 -0.44 16 33 H 0.07 0.01 7.85 -51.93 -0.41 -0.39 16 34 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 35 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.08 7.62 -51.93 -0.40 -0.48 16 37 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 38 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 39 H 0.07 -0.02 7.20 -51.93 -0.37 -0.39 16 LS Contribution 319.01 15.07 4.81 4.81 Total: 0.00 -4.41 319.01 -6.20 -10.60 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: -5.34 Total: -7.84 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 1.41 Total: 1.49 kcal Atomic # 8 Polarization: -0.75 SS G_CDS: -0.65 Total: -1.40 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -6.42 Total: -7.66 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -4.41 -6.20 -10.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.747 kcal (2) G-P(sol) polarization free energy of solvation -4.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds