Wall clock time and date at job start Mon Mar 8 2021 10:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32570 * 1 3 3 C 1.47821 * 119.99560 * 2 1 4 4 C 1.39431 * 120.11184 * 245.66827 * 3 2 1 5 5 C 1.38503 * 119.80067 * 179.97438 * 4 3 2 6 6 O 1.35908 * 119.98777 * 180.02562 * 5 4 3 7 7 C 1.42895 * 117.00073 * 179.97438 * 6 5 4 8 8 C 1.38806 * 120.02537 * 359.97438 * 5 4 3 9 9 C 1.38270 * 120.23683 * 359.79001 * 8 5 4 10 10 C 1.37982 * 120.19556 * 0.46574 * 9 8 5 11 11 C 1.50702 * 120.01780 * 179.79026 * 10 9 8 12 12 O 1.42901 * 109.46869 * 255.31486 * 11 10 9 13 13 Si 1.86301 * 109.47005 * 15.30780 * 11 10 9 14 14 H 1.48505 * 109.46969 * 60.00269 * 13 11 10 15 15 H 1.48499 * 109.47378 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47163 * 300.00670 * 13 11 10 17 17 Si 1.86793 * 120.00114 * 180.02562 * 2 1 3 18 18 C 1.86308 * 109.46934 * 265.02482 * 17 2 1 19 19 C 1.86295 * 109.47257 * 25.02346 * 17 2 1 20 20 C 1.86294 * 109.47163 * 145.02855 * 17 2 1 21 21 H 1.07996 * 120.00209 * 5.04975 * 1 2 3 22 22 H 1.07997 * 119.99634 * 185.05692 * 1 2 3 23 23 H 1.08007 * 120.10455 * 359.96279 * 4 3 2 24 24 H 1.08999 * 109.47290 * 180.02562 * 7 6 5 25 25 H 1.09001 * 109.47157 * 300.00354 * 7 6 5 26 26 H 1.09001 * 109.47239 * 60.00192 * 7 6 5 27 27 H 1.08002 * 119.88171 * 180.02562 * 8 5 4 28 28 H 1.07994 * 119.90631 * 180.23201 * 9 8 5 29 29 H 1.08993 * 109.47474 * 135.31030 * 11 10 9 30 30 H 0.96699 * 114.01004 * 59.99459 * 12 11 10 31 31 H 1.09002 * 109.47172 * 60.00342 * 18 17 2 32 32 H 1.08999 * 109.47096 * 179.97438 * 18 17 2 33 33 H 1.08996 * 109.47147 * 300.00284 * 18 17 2 34 34 H 1.09002 * 109.47129 * 60.00436 * 19 17 2 35 35 H 1.08999 * 109.47296 * 180.02562 * 19 17 2 36 36 H 1.09002 * 109.47419 * 300.00007 * 19 17 2 37 37 H 1.09003 * 109.47598 * 64.97746 * 20 17 2 38 38 H 1.09000 * 109.47084 * 184.98143 * 20 17 2 39 39 H 1.09000 * 109.46905 * 304.97590 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 2.8448 1.6376 -1.0990 5 6 3.5341 2.8389 -1.0924 6 8 4.2952 3.1913 -2.1618 7 6 4.9782 4.4442 -2.0873 8 6 3.4471 3.6836 0.0056 9 6 2.6700 3.3327 1.0942 10 6 1.9835 2.1358 1.0998 11 6 1.1414 1.7552 2.2903 12 8 1.8192 0.7545 3.0527 13 14 0.8546 3.2577 3.3538 14 1 0.1503 4.2978 2.5615 15 1 0.0254 2.8827 4.5272 16 1 2.1598 3.7904 3.8205 17 14 2.2597 -1.6177 -0.0007 18 6 2.7021 -2.0800 1.7490 19 6 1.1919 -2.9509 -0.7443 20 6 3.8166 -1.4353 -1.0074 21 1 -0.5400 0.9316 -0.0823 22 1 -0.5399 -0.9317 0.0824 23 1 2.9116 0.9796 -1.9529 24 1 5.5471 4.6029 -3.0034 25 1 4.2514 5.2477 -1.9676 26 1 5.6567 4.4381 -1.2343 27 1 3.9852 4.6200 0.0082 28 1 2.6031 3.9957 1.9440 29 1 0.1834 1.3643 1.9477 30 1 2.6812 1.0337 3.3904 31 1 1.7912 -2.1867 2.3380 32 1 3.2467 -3.0242 1.7486 33 1 3.3268 -1.3000 2.1841 34 1 0.9331 -2.6804 -1.7680 35 1 1.7368 -3.8950 -0.7443 36 1 0.2810 -3.0576 -0.1552 37 1 4.4805 -0.7189 -0.5234 38 1 4.3164 -2.4011 -1.0816 39 1 3.5639 -1.0793 -2.0061 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:35:49 Heat of formation + Delta-G solvation = -63.237781 kcal Electronic energy + Delta-G solvation = -18910.078410 eV Core-core repulsion = 16135.201970 eV Total energy + Delta-G solvation = -2774.876440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26324 -39.28754 -37.05637 -34.67223 -32.22553 -30.53885 -29.36091 -28.62404 -28.19613 -28.03074 -26.14012 -23.98954 -22.47558 -20.70453 -18.46128 -18.22530 -17.22583 -16.81993 -16.63582 -16.06989 -15.78497 -15.30324 -14.94225 -14.65920 -14.50448 -13.97756 -13.83621 -13.73405 -13.63792 -13.41011 -13.28268 -13.11609 -13.05724 -12.91575 -12.79023 -12.28629 -12.25479 -12.06564 -11.88038 -11.59076 -11.02825 -10.82654 -10.74217 -10.27545 -10.16192 -9.54054 -9.09989 0.18040 0.32600 1.15109 1.21780 1.40283 1.51102 1.89274 1.91421 2.05940 2.26931 2.37914 2.64607 2.82230 3.64893 3.72300 3.88414 3.91649 4.21037 4.27195 4.34900 4.46459 4.50772 4.68718 4.72736 4.83487 4.83917 4.85935 4.88702 4.95158 4.97116 5.01217 5.02298 5.16293 5.30942 5.37615 5.54028 5.59986 5.67090 5.77997 5.79449 5.89690 6.40348 6.80377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.377 4.377 3 C 0.028 3.972 4 C -0.165 4.165 5 C 0.122 3.878 6 O -0.337 6.337 7 C 0.018 3.982 8 C -0.217 4.217 9 C -0.090 4.090 10 C -0.161 4.161 11 C -0.068 4.068 12 O -0.539 6.539 13 Si 0.969 3.031 14 H -0.264 1.264 15 H -0.273 1.273 16 H -0.247 1.247 17 Si 1.101 2.899 18 C -0.446 4.446 19 C -0.457 4.457 20 C -0.459 4.459 21 H 0.091 0.909 22 H 0.122 0.878 23 H 0.135 0.865 24 H 0.115 0.885 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.145 0.855 28 H 0.137 0.863 29 H 0.117 0.883 30 H 0.384 0.616 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 0.964 0.207 1.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.416 4.416 3 C 0.028 3.972 4 C -0.184 4.184 5 C 0.076 3.924 6 O -0.251 6.251 7 C -0.076 4.076 8 C -0.236 4.236 9 C -0.108 4.108 10 C -0.162 4.162 11 C -0.179 4.179 12 O -0.345 6.345 13 Si 0.794 3.206 14 H -0.189 1.189 15 H -0.198 1.198 16 H -0.171 1.171 17 Si 1.289 2.711 18 C -0.553 4.553 19 C -0.564 4.564 20 C -0.565 4.565 21 H 0.109 0.891 22 H 0.140 0.860 23 H 0.153 0.847 24 H 0.133 0.867 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.163 0.837 28 H 0.154 0.846 29 H 0.135 0.865 30 H 0.232 0.768 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.121 1.344 0.400 1.407 hybrid contribution 0.644 0.599 -0.196 0.901 sum 0.765 1.943 0.204 2.098 Atomic orbital electron populations 1.24351 0.95250 1.02584 0.94496 1.28109 1.01328 1.07809 1.04372 1.18713 0.93872 0.93294 0.91336 1.20711 1.00841 0.96310 1.00498 1.19173 0.91865 0.94333 0.86980 1.86063 1.60130 1.40222 1.38650 1.23322 0.96526 0.82812 1.04940 1.21387 1.05529 1.02006 0.94671 1.21019 0.95587 0.95966 0.98240 1.20391 1.02709 0.95324 0.97755 1.24873 0.98025 1.01730 0.93312 1.86512 1.37063 1.40282 1.70639 0.85460 0.80640 0.75979 0.78533 1.18862 1.19820 1.17076 0.77575 0.64763 0.62102 0.66626 1.26114 1.05373 1.04765 1.19034 1.26230 1.10157 1.12793 1.07247 1.26322 1.16532 1.04405 1.09264 0.89080 0.85970 0.84699 0.86683 0.91770 0.91637 0.83704 0.84594 0.86492 0.76790 0.91319 0.91594 0.91332 0.91066 0.90736 0.90660 0.91994 0.90867 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.11 11.81 66.67 0.79 0.90 16 2 C -0.38 -0.23 3.54 23.66 0.08 -0.14 16 3 C 0.03 0.10 4.90 -20.13 -0.10 0.00 16 4 C -0.17 -0.87 8.80 22.62 0.20 -0.67 16 5 C 0.12 0.68 6.68 22.47 0.15 0.83 16 6 O -0.34 -1.83 10.49 -92.51 -0.97 -2.80 16 7 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 8 C -0.22 -0.59 9.03 22.41 0.20 -0.39 16 9 C -0.09 -0.18 8.65 22.22 0.19 0.01 16 10 C -0.16 -0.41 5.27 -19.60 -0.10 -0.51 16 11 C -0.07 -0.02 2.12 71.24 0.15 0.13 16 12 O -0.54 0.01 12.73 -148.98 -1.90 -1.89 16 13 Si 0.97 0.00 25.51 68.60 1.75 1.75 16 14 H -0.26 -0.54 7.11 99.48 0.71 0.17 16 15 H -0.27 -0.87 7.11 99.48 0.71 -0.16 16 16 H -0.25 0.28 6.72 99.48 0.67 0.95 16 17 Si 1.10 -2.56 12.28 68.60 0.84 -1.71 16 18 C -0.45 0.11 8.65 113.37 0.98 1.09 16 19 C -0.46 1.12 8.42 113.37 0.96 2.07 16 20 C -0.46 -0.08 7.73 113.37 0.88 0.80 16 21 H 0.09 -0.06 7.87 -2.91 -0.02 -0.08 16 22 H 0.12 -0.54 7.19 -2.91 -0.02 -0.56 16 23 H 0.14 0.57 6.98 -2.91 -0.02 0.55 16 24 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 25 H 0.06 -0.26 7.66 -2.39 -0.02 -0.27 16 26 H 0.07 -0.27 7.66 -2.39 -0.02 -0.29 16 27 H 0.15 -0.23 6.28 -2.91 -0.02 -0.25 16 28 H 0.14 -0.17 4.88 -2.91 -0.01 -0.18 16 29 H 0.12 -0.02 5.84 -2.39 -0.01 -0.04 16 30 H 0.38 -2.18 8.70 -74.06 -0.64 -2.83 16 31 H 0.07 0.04 7.96 -2.39 -0.02 0.02 16 32 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 33 H 0.07 0.05 7.85 -2.39 -0.02 0.03 16 34 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 35 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 36 H 0.07 -0.24 7.62 -2.39 -0.02 -0.26 16 37 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16 38 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 39 H 0.07 0.03 7.20 -2.39 -0.02 0.01 16 Total: 0.00 -10.08 319.01 6.32 -3.76 By element: Atomic # 1 Polarization: -5.40 SS G_CDS: 1.10 Total: -4.30 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 5.49 Total: 5.18 kcal Atomic # 8 Polarization: -1.82 SS G_CDS: -2.87 Total: -4.68 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: 2.59 Total: 0.04 kcal Total: -10.08 6.32 -3.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.473 kcal (2) G-P(sol) polarization free energy of solvation -10.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds