Wall clock time and date at job start Mon Mar 8 2021 10:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32560 * 1 3 3 C 1.47828 * 120.00019 * 2 1 4 4 C 1.39564 * 120.10208 * 133.48517 * 3 2 1 5 5 C 1.38062 * 120.01997 * 179.70412 * 4 3 2 6 6 C 1.38173 * 120.22155 * 0.55311 * 5 4 3 7 7 C 1.50693 * 119.89101 * 179.72586 * 6 5 4 8 8 O 1.42905 * 109.47011 * 254.72204 * 7 6 5 9 9 Si 1.86292 * 109.47635 * 14.72665 * 7 6 5 10 10 H 1.48503 * 109.47161 * 299.99845 * 9 7 6 11 11 H 1.48500 * 109.47345 * 60.00099 * 9 7 6 12 12 H 1.48508 * 109.47285 * 180.02562 * 9 7 6 13 13 C 1.39090 * 120.20498 * 359.44665 * 6 5 4 14 14 S 1.76200 * 120.00554 * 180.25301 * 13 6 5 15 15 C 1.81399 * 102.99919 * 180.02562 * 14 13 6 16 16 C 1.38702 * 119.97909 * 0.27644 * 13 6 5 17 17 Si 1.86800 * 120.00119 * 180.02562 * 2 1 3 18 18 C 1.86299 * 109.46967 * 273.19128 * 17 2 1 19 19 C 1.86306 * 109.46773 * 33.18646 * 17 2 1 20 20 C 1.86294 * 109.47351 * 153.18870 * 17 2 1 21 21 H 1.08000 * 120.00157 * 179.97438 * 1 2 3 22 22 H 1.07999 * 119.99777 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.99016 * 359.97438 * 4 3 2 24 24 H 1.07992 * 119.89060 * 180.27726 * 5 4 3 25 25 H 1.09010 * 109.47104 * 134.72887 * 7 6 5 26 26 H 0.96702 * 114.00303 * 180.02562 * 8 7 6 27 27 H 1.08997 * 109.47195 * 179.97438 * 15 14 13 28 28 H 1.08997 * 109.47557 * 300.00349 * 15 14 13 29 29 H 1.09009 * 109.46890 * 59.99766 * 15 14 13 30 30 H 1.08010 * 120.10883 * 179.97438 * 16 13 6 31 31 H 1.09001 * 109.47699 * 59.99741 * 18 17 2 32 32 H 1.09001 * 109.46976 * 179.97438 * 18 17 2 33 33 H 1.09005 * 109.46824 * 299.99618 * 18 17 2 34 34 H 1.08999 * 109.47282 * 60.00462 * 19 17 2 35 35 H 1.09001 * 109.46828 * 180.02562 * 19 17 2 36 36 H 1.09001 * 109.47190 * 299.99828 * 19 17 2 37 37 H 1.09003 * 109.47293 * 65.83780 * 20 17 2 38 38 H 1.08998 * 109.47307 * 185.84112 * 20 17 2 39 39 H 1.09001 * 109.46798 * 305.84237 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 3.1343 1.4710 0.8760 5 6 3.8273 2.6650 0.8704 6 6 3.4588 3.6790 0.0071 7 6 4.2165 4.9815 0.0115 8 8 3.4313 5.9872 0.6552 9 14 5.8216 4.7633 0.9315 10 1 5.5386 4.3506 2.3297 11 1 6.6376 3.7184 0.2625 12 1 6.5680 6.0472 0.9363 13 6 2.3943 3.4989 -0.8699 14 16 1.9330 4.7930 -1.9732 15 6 0.5309 4.0792 -2.8760 16 6 1.6958 2.3006 -0.8753 17 14 2.2596 -1.6177 -0.0007 18 6 2.4854 -2.2051 1.7528 19 6 1.2970 -2.8901 -0.9628 20 6 3.9277 -1.3714 -0.7928 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 3.4227 0.6826 1.5556 24 1 4.6574 2.8087 1.5460 25 1 4.4242 5.2845 -1.0149 26 1 3.8578 6.8542 0.6941 27 1 0.1570 4.8043 -3.5988 28 1 0.8553 3.1791 -3.3982 29 1 -0.2625 3.8252 -2.1729 30 1 0.8686 2.1587 -1.5552 31 1 1.5095 -2.3493 2.2163 32 1 3.0301 -3.1493 1.7523 33 1 3.0486 -1.4607 2.3156 34 1 1.1649 -2.5464 -1.9887 35 1 1.8418 -3.8341 -0.9628 36 1 0.3211 -3.0342 -0.4992 37 1 4.5294 -0.7062 -0.1735 38 1 4.4307 -2.3337 -0.8874 39 1 3.7989 -0.9300 -1.7811 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:36:51 Heat of formation + Delta-G solvation = -34.873252 kcal Electronic energy + Delta-G solvation = -18092.121725 eV Core-core repulsion = 15442.545942 eV Total energy + Delta-G solvation = -2649.575783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43857 -37.67087 -35.02744 -32.38035 -31.41826 -29.74813 -29.53362 -28.46785 -28.41065 -26.50677 -23.96855 -22.77632 -20.73590 -18.41617 -17.99189 -17.12441 -16.91212 -16.12667 -15.60444 -15.25655 -14.99188 -14.78656 -14.70767 -14.38405 -14.20509 -14.07313 -13.88346 -13.82863 -13.52449 -13.42135 -13.30900 -13.26352 -13.13191 -12.87686 -12.53123 -12.17478 -12.06162 -11.73111 -11.41823 -11.30141 -10.91355 -10.86085 -10.55832 -10.37152 -10.22829 -9.36027 -8.25315 0.04073 0.32914 0.61735 1.11389 1.16387 1.45180 1.48333 1.54799 1.69807 1.83340 1.91621 2.06537 2.50493 2.76653 3.49046 3.80005 3.89379 4.02014 4.11048 4.11314 4.22243 4.38836 4.52681 4.62910 4.66225 4.71054 4.71260 4.71975 4.73663 4.76284 4.78064 4.78568 4.92629 5.13091 5.35429 5.38768 5.42939 5.48275 5.53356 5.55695 5.73088 5.96310 6.66582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.373 4.373 3 C -0.006 4.006 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.065 4.065 7 C -0.083 4.083 8 O -0.536 6.536 9 Si 0.946 3.054 10 H -0.247 1.247 11 H -0.247 1.247 12 H -0.255 1.255 13 C -0.056 4.056 14 S -0.093 6.093 15 C -0.155 4.155 16 C -0.133 4.133 17 Si 1.049 2.951 18 C -0.448 4.448 19 C -0.449 4.449 20 C -0.447 4.447 21 H 0.106 0.894 22 H 0.093 0.907 23 H 0.131 0.869 24 H 0.128 0.872 25 H 0.077 0.923 26 H 0.378 0.622 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.071 -1.687 -1.009 1.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.415 4.415 3 C -0.008 4.008 4 C -0.140 4.140 5 C -0.120 4.120 6 C -0.071 4.071 7 C -0.193 4.193 8 O -0.342 6.342 9 Si 0.768 3.232 10 H -0.170 1.170 11 H -0.170 1.170 12 H -0.179 1.179 13 C -0.169 4.169 14 S 0.151 5.849 15 C -0.324 4.324 16 C -0.157 4.157 17 Si 1.241 2.759 18 C -0.555 4.555 19 C -0.556 4.556 20 C -0.555 4.555 21 H 0.124 0.876 22 H 0.111 0.889 23 H 0.148 0.852 24 H 0.146 0.854 25 H 0.094 0.906 26 H 0.225 0.775 27 H 0.127 0.873 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.144 0.856 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.778 -1.057 -0.774 1.524 hybrid contribution -0.787 -0.582 -0.154 0.990 sum -0.009 -1.639 -0.927 1.883 Atomic orbital electron populations 1.24298 0.95506 1.01929 0.94566 1.28056 1.01058 1.08086 1.04259 1.18855 0.94655 0.92820 0.94503 1.21144 0.95750 0.97594 0.99551 1.20937 0.99962 0.93482 0.97573 1.18819 0.96675 0.94491 0.97155 1.24709 1.03832 0.88819 1.01989 1.86551 1.45909 1.21382 1.80309 0.85780 0.75201 0.81544 0.80698 1.17044 1.17043 1.17875 1.21542 0.98384 0.97025 0.99991 1.85635 1.38699 1.20379 1.40178 1.23764 0.99749 1.05518 1.03351 1.21325 1.00640 0.92292 1.01455 0.78365 0.66456 0.63317 0.67798 1.26133 1.04873 1.06095 1.18443 1.26138 1.08740 1.11880 1.08883 1.26114 1.17022 1.04724 1.07620 0.87570 0.88872 0.85157 0.85442 0.90564 0.77495 0.87283 0.89814 0.89799 0.85610 0.91102 0.90929 0.91109 0.91064 0.90837 0.91181 0.90957 0.91111 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.09 13.31 28.82 0.38 0.47 16 2 C -0.37 0.08 4.41 -37.57 -0.17 -0.08 16 3 C -0.01 -0.01 5.26 -105.04 -0.55 -0.56 16 4 C -0.12 -0.18 8.65 -39.15 -0.34 -0.51 16 5 C -0.10 -0.22 8.64 -39.67 -0.34 -0.56 16 6 C -0.07 -0.20 5.32 -104.33 -0.56 -0.76 16 7 C -0.08 -0.12 2.03 36.00 0.07 -0.04 16 8 O -0.54 -0.92 12.71 -35.23 -0.45 -1.36 16 9 Si 0.95 0.32 25.47 -169.99 -4.33 -4.01 16 10 H -0.25 -0.28 6.74 56.52 0.38 0.10 16 11 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 12 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 13 C -0.06 -0.18 6.10 -39.09 -0.24 -0.42 16 14 S -0.09 -0.21 20.97 -107.50 -2.25 -2.46 16 15 C -0.16 0.09 9.15 101.05 0.92 1.01 16 16 C -0.13 -0.30 8.64 -38.97 -0.34 -0.64 16 17 Si 1.05 -2.23 11.16 -169.99 -1.90 -4.12 16 18 C -0.45 0.70 8.65 101.05 0.87 1.57 16 19 C -0.45 0.77 8.56 101.05 0.87 1.63 16 20 C -0.45 0.42 8.63 101.05 0.87 1.30 16 21 H 0.11 -0.26 7.36 -52.49 -0.39 -0.64 16 22 H 0.09 -0.03 7.84 -52.49 -0.41 -0.44 16 23 H 0.13 -0.10 6.97 -52.49 -0.37 -0.47 16 24 H 0.13 0.09 4.86 -52.49 -0.25 -0.17 16 25 H 0.08 0.05 7.30 -51.92 -0.38 -0.33 16 26 H 0.38 -1.01 8.74 45.56 0.40 -0.61 16 27 H 0.11 -0.19 8.14 -51.93 -0.42 -0.61 16 28 H 0.08 -0.10 7.75 -51.93 -0.40 -0.50 16 29 H 0.08 -0.07 7.75 -51.92 -0.40 -0.47 16 30 H 0.13 0.10 5.75 -52.48 -0.30 -0.20 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.11 7.60 -51.93 -0.39 -0.50 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 36 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 37 H 0.07 -0.05 7.48 -51.93 -0.39 -0.44 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 39 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 LS Contribution 331.62 15.07 5.00 5.00 Total: 0.00 -5.08 331.62 -7.88 -12.96 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: -5.41 Total: -8.40 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 1.46 Total: 2.40 kcal Atomic # 8 Polarization: -0.92 SS G_CDS: -0.45 Total: -1.36 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -6.23 Total: -8.13 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.25 Total: -2.46 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -5.08 -7.88 -12.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.918 kcal (2) G-P(sol) polarization free energy of solvation -5.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds