Wall clock time and date at job start Mon Mar 8 2021 10:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32560 * 1 3 3 C 1.47828 * 120.00019 * 2 1 4 4 C 1.39564 * 120.10208 * 133.48517 * 3 2 1 5 5 C 1.38062 * 120.01997 * 179.70412 * 4 3 2 6 6 C 1.38173 * 120.22155 * 0.55311 * 5 4 3 7 7 C 1.50693 * 119.89101 * 179.72586 * 6 5 4 8 8 O 1.42905 * 109.47011 * 254.72204 * 7 6 5 9 9 Si 1.86292 * 109.47635 * 14.72665 * 7 6 5 10 10 H 1.48503 * 109.47161 * 299.99845 * 9 7 6 11 11 H 1.48500 * 109.47345 * 60.00099 * 9 7 6 12 12 H 1.48508 * 109.47285 * 180.02562 * 9 7 6 13 13 C 1.39090 * 120.20498 * 359.44665 * 6 5 4 14 14 S 1.76200 * 120.00554 * 180.25301 * 13 6 5 15 15 C 1.81399 * 102.99919 * 180.02562 * 14 13 6 16 16 C 1.38702 * 119.97909 * 0.27644 * 13 6 5 17 17 Si 1.86800 * 120.00119 * 180.02562 * 2 1 3 18 18 C 1.86299 * 109.46967 * 273.19128 * 17 2 1 19 19 C 1.86306 * 109.46773 * 33.18646 * 17 2 1 20 20 C 1.86294 * 109.47351 * 153.18870 * 17 2 1 21 21 H 1.08000 * 120.00157 * 179.97438 * 1 2 3 22 22 H 1.07999 * 119.99777 * 0.02562 * 1 2 3 23 23 H 1.08001 * 119.99016 * 359.97438 * 4 3 2 24 24 H 1.07992 * 119.89060 * 180.27726 * 5 4 3 25 25 H 1.09010 * 109.47104 * 134.72887 * 7 6 5 26 26 H 0.96702 * 114.00303 * 180.02562 * 8 7 6 27 27 H 1.08997 * 109.47195 * 179.97438 * 15 14 13 28 28 H 1.08997 * 109.47557 * 300.00349 * 15 14 13 29 29 H 1.09009 * 109.46890 * 59.99766 * 15 14 13 30 30 H 1.08010 * 120.10883 * 179.97438 * 16 13 6 31 31 H 1.09001 * 109.47699 * 59.99741 * 18 17 2 32 32 H 1.09001 * 109.46976 * 179.97438 * 18 17 2 33 33 H 1.09005 * 109.46824 * 299.99618 * 18 17 2 34 34 H 1.08999 * 109.47282 * 60.00462 * 19 17 2 35 35 H 1.09001 * 109.46828 * 180.02562 * 19 17 2 36 36 H 1.09001 * 109.47190 * 299.99828 * 19 17 2 37 37 H 1.09003 * 109.47293 * 65.83780 * 20 17 2 38 38 H 1.08998 * 109.47307 * 185.84112 * 20 17 2 39 39 H 1.09001 * 109.46798 * 305.84237 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 3.1343 1.4710 0.8760 5 6 3.8273 2.6650 0.8704 6 6 3.4588 3.6790 0.0071 7 6 4.2165 4.9815 0.0115 8 8 3.4313 5.9872 0.6552 9 14 5.8216 4.7633 0.9315 10 1 5.5386 4.3506 2.3297 11 1 6.6376 3.7184 0.2625 12 1 6.5680 6.0472 0.9363 13 6 2.3943 3.4989 -0.8699 14 16 1.9330 4.7930 -1.9732 15 6 0.5309 4.0792 -2.8760 16 6 1.6958 2.3006 -0.8753 17 14 2.2596 -1.6177 -0.0007 18 6 2.4854 -2.2051 1.7528 19 6 1.2970 -2.8901 -0.9628 20 6 3.9277 -1.3714 -0.7928 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 3.4227 0.6826 1.5556 24 1 4.6574 2.8087 1.5460 25 1 4.4242 5.2845 -1.0149 26 1 3.8578 6.8542 0.6941 27 1 0.1570 4.8043 -3.5988 28 1 0.8553 3.1791 -3.3982 29 1 -0.2625 3.8252 -2.1729 30 1 0.8686 2.1587 -1.5552 31 1 1.5095 -2.3493 2.2163 32 1 3.0301 -3.1493 1.7523 33 1 3.0486 -1.4607 2.3156 34 1 1.1649 -2.5464 -1.9887 35 1 1.8418 -3.8341 -0.9628 36 1 0.3211 -3.0342 -0.4992 37 1 4.5294 -0.7062 -0.1735 38 1 4.4307 -2.3337 -0.8874 39 1 3.7989 -0.9300 -1.7811 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:36:50 Heat of formation + Delta-G solvation = -26.009713 kcal Electronic energy + Delta-G solvation = -18091.737373 eV Core-core repulsion = 15442.545942 eV Total energy + Delta-G solvation = -2649.191431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52071 -37.73803 -35.04242 -32.47056 -31.44153 -29.71749 -29.40877 -28.31670 -28.28707 -26.55660 -24.06897 -22.83714 -20.75481 -18.48879 -18.04488 -17.20706 -16.98535 -16.17830 -15.63814 -15.30343 -15.02264 -14.79948 -14.69036 -14.42960 -14.06841 -14.01987 -13.82168 -13.74546 -13.49634 -13.36899 -13.17916 -13.15621 -13.01342 -12.82650 -12.58341 -12.23292 -12.12612 -11.78558 -11.39220 -11.32541 -10.84998 -10.78194 -10.60831 -10.34532 -10.28846 -9.42125 -8.39365 -0.04112 0.20214 0.53592 1.11395 1.16452 1.41636 1.44075 1.50350 1.81728 1.85834 1.99684 2.20045 2.57772 2.74179 3.46549 3.76043 3.83378 3.98295 4.15127 4.17014 4.21289 4.31722 4.46194 4.66237 4.72571 4.78143 4.81506 4.83223 4.84217 4.86506 4.88294 4.88620 4.94372 5.07127 5.28875 5.32893 5.45411 5.57691 5.65353 5.67685 5.73427 5.92743 6.79820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.389 4.389 3 C -0.013 4.013 4 C -0.128 4.128 5 C -0.113 4.113 6 C -0.088 4.088 7 C -0.088 4.088 8 O -0.554 6.554 9 Si 0.981 3.019 10 H -0.259 1.259 11 H -0.256 1.256 12 H -0.252 1.252 13 C -0.072 4.072 14 S -0.126 6.126 15 C -0.147 4.147 16 C -0.145 4.145 17 Si 1.107 2.893 18 C -0.459 4.459 19 C -0.458 4.458 20 C -0.463 4.463 21 H 0.126 0.874 22 H 0.085 0.915 23 H 0.150 0.850 24 H 0.138 0.862 25 H 0.078 0.922 26 H 0.394 0.606 27 H 0.122 0.878 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 -2.491 -0.907 2.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.428 4.428 3 C -0.014 4.014 4 C -0.148 4.148 5 C -0.132 4.132 6 C -0.094 4.094 7 C -0.197 4.197 8 O -0.363 6.363 9 Si 0.804 3.196 10 H -0.183 1.183 11 H -0.180 1.180 12 H -0.176 1.176 13 C -0.184 4.184 14 S 0.117 5.883 15 C -0.315 4.315 16 C -0.168 4.168 17 Si 1.295 2.705 18 C -0.566 4.566 19 C -0.565 4.565 20 C -0.569 4.569 21 H 0.144 0.856 22 H 0.104 0.896 23 H 0.168 0.832 24 H 0.155 0.845 25 H 0.096 0.904 26 H 0.244 0.756 27 H 0.141 0.859 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.153 0.847 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.480 -1.831 -0.680 2.011 hybrid contribution -0.733 -0.329 -0.201 0.828 sum -0.254 -2.159 -0.881 2.346 Atomic orbital electron populations 1.24486 0.95461 1.02586 0.93784 1.28436 1.01456 1.08117 1.04812 1.19139 0.94763 0.93419 0.94120 1.21456 0.95611 0.97916 0.99786 1.21175 1.00503 0.93746 0.97775 1.19159 0.97170 0.95477 0.97545 1.24838 1.04145 0.88290 1.02446 1.86500 1.46873 1.22523 1.80358 0.85269 0.73945 0.81104 0.79305 1.18299 1.17959 1.17565 1.21714 0.98882 0.97447 1.00404 1.85630 1.40408 1.21394 1.40840 1.23812 0.98411 1.06016 1.03256 1.21540 1.00977 0.92350 1.01977 0.77490 0.64620 0.61631 0.66789 1.26248 1.05050 1.06371 1.18916 1.26231 1.09242 1.12145 1.08917 1.26319 1.18455 1.04807 1.07357 0.85586 0.89628 0.83198 0.84475 0.90370 0.75612 0.85912 0.89081 0.89442 0.84734 0.90955 0.90573 0.91107 0.91253 0.90580 0.90581 0.91302 0.90681 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.24 13.31 66.67 0.89 1.12 16 2 C -0.39 0.26 4.41 23.66 0.10 0.37 16 3 C -0.01 -0.05 5.26 -20.14 -0.11 -0.15 16 4 C -0.13 -0.44 8.65 22.55 0.20 -0.25 16 5 C -0.11 -0.61 8.64 22.21 0.19 -0.42 16 6 C -0.09 -0.65 5.32 -19.68 -0.10 -0.76 16 7 C -0.09 -0.34 2.03 71.23 0.14 -0.20 16 8 O -0.55 -2.47 12.71 -148.98 -1.89 -4.36 16 9 Si 0.98 1.14 25.47 68.60 1.75 2.88 16 10 H -0.26 -0.73 6.74 99.48 0.67 -0.06 16 11 H -0.26 -0.58 7.11 99.48 0.71 0.13 16 12 H -0.25 -0.10 7.11 99.48 0.71 0.61 16 13 C -0.07 -0.55 6.10 22.59 0.14 -0.41 16 14 S -0.13 -0.72 20.97 -56.49 -1.18 -1.90 16 15 C -0.15 0.13 9.15 113.37 1.04 1.16 16 16 C -0.14 -0.79 8.64 22.66 0.20 -0.59 16 17 Si 1.11 -5.36 11.16 68.60 0.77 -4.60 16 18 C -0.46 1.82 8.65 113.37 0.98 2.80 16 19 C -0.46 2.02 8.56 113.37 0.97 2.99 16 20 C -0.46 0.83 8.63 113.37 0.98 1.80 16 21 H 0.13 -0.78 7.36 -2.91 -0.02 -0.80 16 22 H 0.09 -0.04 7.84 -2.91 -0.02 -0.07 16 23 H 0.15 -0.25 6.97 -2.91 -0.02 -0.27 16 24 H 0.14 0.31 4.86 -2.91 -0.01 0.29 16 25 H 0.08 0.21 7.30 -2.38 -0.02 0.19 16 26 H 0.39 -1.80 8.74 -74.06 -0.65 -2.45 16 27 H 0.12 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.09 -0.21 7.75 -2.39 -0.02 -0.23 16 29 H 0.09 -0.13 7.75 -2.39 -0.02 -0.15 16 30 H 0.13 0.32 5.75 -2.91 -0.02 0.30 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 33 H 0.07 -0.27 7.60 -2.38 -0.02 -0.29 16 34 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 35 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.08 -0.41 7.69 -2.39 -0.02 -0.43 16 37 H 0.07 -0.08 7.48 -2.39 -0.02 -0.10 16 38 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 39 H 0.06 -0.01 7.96 -2.39 -0.02 -0.03 16 Total: 0.00 -12.02 331.62 6.15 -5.88 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: 1.10 Total: -5.37 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 5.61 Total: 7.48 kcal Atomic # 8 Polarization: -2.47 SS G_CDS: -1.89 Total: -4.36 kcal Atomic # 14 Polarization: -4.23 SS G_CDS: 2.51 Total: -1.72 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.18 Total: -1.90 kcal Total: -12.02 6.15 -5.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.134 kcal (2) G-P(sol) polarization free energy of solvation -12.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds