Wall clock time and date at job start Mon Mar 8 2021 10:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32565 * 1 3 3 C 1.47818 * 119.99971 * 2 1 4 4 C 1.39551 * 120.10328 * 132.82762 * 3 2 1 5 5 C 1.38044 * 120.00404 * 180.02562 * 4 3 2 6 6 C 1.38193 * 120.22439 * 359.97438 * 5 4 3 7 7 C 1.50691 * 119.89430 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.47338 * 255.00053 * 7 6 5 9 9 Si 1.86303 * 109.47382 * 15.00010 * 7 6 5 10 10 H 1.48492 * 109.47136 * 299.99935 * 9 7 6 11 11 H 1.48501 * 109.47097 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46842 * 60.00097 * 9 7 6 13 13 C 1.39030 * 120.20890 * 0.23433 * 6 5 4 14 14 N 1.39688 * 120.00178 * 179.72485 * 13 6 5 15 15 C 1.47017 * 110.99996 * 243.63337 * 14 13 6 16 16 C 1.53098 * 109.26022 * 177.61063 * 15 14 13 17 17 O 1.43013 * 109.25757 * 56.84835 * 16 15 14 18 18 C 1.43021 * 113.74119 * 301.33267 * 17 16 15 19 19 C 1.47015 * 111.00202 * 120.00317 * 14 13 6 20 20 C 1.38650 * 119.98797 * 359.51143 * 13 6 5 21 21 Si 1.86795 * 119.99755 * 180.02562 * 2 1 3 22 22 C 1.86306 * 109.46954 * 174.67911 * 21 2 1 23 23 C 1.86299 * 109.47264 * 294.67626 * 21 2 1 24 24 C 1.86295 * 109.47484 * 54.67770 * 21 2 1 25 25 H 1.08004 * 119.99796 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00112 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99950 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.88875 * 179.97438 * 5 4 3 29 29 H 1.09004 * 109.47359 * 134.99983 * 7 6 5 30 30 H 0.96692 * 114.00020 * 59.99960 * 8 7 6 31 31 H 1.08998 * 109.50967 * 297.54530 * 15 14 13 32 32 H 1.09001 * 109.50388 * 57.67763 * 15 14 13 33 33 H 1.09008 * 109.50226 * 296.91716 * 16 15 14 34 34 H 1.08995 * 109.50509 * 176.78685 * 16 15 14 35 35 H 1.09005 * 109.49956 * 298.73740 * 18 17 16 36 36 H 1.09001 * 109.54131 * 178.62915 * 18 17 16 37 37 H 1.09001 * 109.50388 * 302.32791 * 19 14 13 38 38 H 1.09007 * 109.50762 * 62.40616 * 19 14 13 39 39 H 1.08000 * 120.10422 * 180.22995 * 20 13 6 40 40 H 1.08998 * 109.46970 * 68.25640 * 22 21 2 41 41 H 1.09004 * 109.47062 * 188.25996 * 22 21 2 42 42 H 1.09000 * 109.46853 * 308.25386 * 22 21 2 43 43 H 1.08998 * 109.47308 * 60.00048 * 23 21 2 44 44 H 1.08999 * 109.47548 * 180.02562 * 23 21 2 45 45 H 1.09010 * 109.47146 * 300.00183 * 23 21 2 46 46 H 1.08997 * 109.47190 * 59.99774 * 24 21 2 47 47 H 1.08997 * 109.47318 * 179.97438 * 24 21 2 48 48 H 1.08997 * 109.47124 * 300.00159 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2801 0.0000 4 6 3.1254 1.4760 0.8854 5 6 3.8139 2.6725 0.8840 6 6 3.4570 3.6794 0.0074 7 6 4.2133 4.9828 0.0127 8 8 3.4205 5.9910 0.6427 9 14 5.8090 4.7712 0.9507 10 1 5.5117 4.3659 2.3480 11 1 6.5545 6.0555 0.9553 12 1 6.6329 3.7235 0.2959 13 6 2.3990 3.4957 -0.8756 14 7 2.0382 4.5186 -1.7559 15 6 0.6788 5.0017 -1.4734 16 6 0.3473 6.1589 -2.4194 17 8 0.4955 5.7195 -3.7722 18 6 1.8078 5.2428 -4.0823 19 6 2.1540 4.0764 -3.1532 20 6 1.7049 2.2955 -0.8853 21 14 2.2596 -1.6177 -0.0007 22 6 4.0847 -1.2810 -0.1635 23 6 1.9350 -2.5229 1.5949 24 6 1.6906 -2.6627 -1.4342 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 3.4072 0.6917 1.5724 28 1 4.6343 2.8222 1.5704 29 1 4.4316 5.2804 -1.0130 30 1 3.1880 5.7924 1.5600 31 1 -0.0344 4.1916 -1.6256 32 1 0.6227 5.3478 -0.4413 33 1 1.0271 6.9898 -2.2301 34 1 -0.6799 6.4828 -2.2523 35 1 2.5299 6.0471 -3.9413 36 1 1.8375 4.9044 -5.1181 37 1 3.1747 3.7470 -3.3473 38 1 1.4649 3.2509 -3.3320 39 1 0.8850 2.1494 -1.5730 40 1 4.4472 -0.7975 0.7436 41 1 4.6159 -2.2214 -0.3112 42 1 4.2587 -0.6273 -1.0181 43 1 0.8672 -2.7199 1.6902 44 1 2.4803 -3.4667 1.5947 45 1 2.2679 -1.9115 2.4337 46 1 1.8805 -2.1331 -2.3678 47 1 2.2359 -3.6065 -1.4349 48 1 0.6228 -2.8597 -1.3390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419860.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:39:13 Heat of formation + Delta-G solvation = -54.970726 kcal Electronic energy + Delta-G solvation = -26223.581612 eV Core-core repulsion = 22788.798750 eV Total energy + Delta-G solvation = -3434.782862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.58960 -39.82397 -37.66382 -36.78568 -34.75285 -32.22439 -31.33887 -31.20193 -29.44864 -28.34989 -28.29460 -27.71277 -26.30388 -25.03758 -23.82091 -22.71762 -21.31024 -20.35300 -18.48502 -17.89979 -17.19513 -17.05498 -16.59836 -16.33110 -16.16597 -16.01178 -15.68403 -15.49921 -15.29873 -14.83680 -14.62162 -14.39895 -14.09493 -13.96399 -13.78478 -13.66038 -13.50563 -13.32080 -13.21415 -13.10710 -13.05446 -12.92305 -12.62317 -12.53607 -12.40638 -12.16419 -11.99847 -11.75163 -11.49913 -11.28676 -10.90299 -10.78992 -10.78111 -10.39299 -10.28570 -9.82687 -9.54594 -9.23603 0.02513 0.26121 1.16260 1.20658 1.42693 1.52790 1.80631 1.92082 1.98017 2.19099 2.58489 2.59959 2.76959 2.89408 3.62637 3.77855 3.84767 3.86146 3.91624 3.98109 4.08878 4.16901 4.18603 4.28887 4.43273 4.48468 4.57351 4.65749 4.67782 4.73684 4.75196 4.79940 4.81241 4.84583 4.85120 4.86690 4.86883 4.89238 4.92176 4.99658 5.15792 5.34927 5.41800 5.51288 5.56349 5.64145 5.66654 5.70078 5.74540 5.88328 6.11387 6.30988 6.79829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.387 4.387 3 C -0.023 4.023 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.111 4.111 7 C -0.059 4.059 8 O -0.544 6.544 9 Si 0.972 3.028 10 H -0.244 1.244 11 H -0.277 1.277 12 H -0.259 1.259 13 C 0.105 3.895 14 N -0.496 5.496 15 C 0.034 3.966 16 C 0.065 3.935 17 O -0.405 6.405 18 C 0.063 3.937 19 C 0.022 3.978 20 C -0.154 4.154 21 Si 1.106 2.894 22 C -0.460 4.460 23 C -0.457 4.457 24 C -0.462 4.462 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.110 0.890 30 H 0.381 0.619 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.040 0.960 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -3.341 1.884 3.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.426 4.426 3 C -0.024 4.024 4 C -0.135 4.135 5 C -0.142 4.142 6 C -0.112 4.112 7 C -0.169 4.169 8 O -0.349 6.349 9 Si 0.797 3.203 10 H -0.167 1.167 11 H -0.203 1.203 12 H -0.183 1.183 13 C 0.011 3.989 14 N -0.218 5.218 15 C -0.093 4.093 16 C -0.012 4.012 17 O -0.324 6.324 18 C -0.013 4.013 19 C -0.105 4.105 20 C -0.174 4.174 21 Si 1.294 2.706 22 C -0.567 4.567 23 C -0.564 4.564 24 C -0.569 4.569 25 H 0.140 0.860 26 H 0.101 0.899 27 H 0.166 0.834 28 H 0.157 0.843 29 H 0.128 0.872 30 H 0.229 0.771 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.477 -2.663 1.660 3.468 hybrid contribution -1.026 -0.652 0.138 1.223 sum 0.451 -3.315 1.798 3.799 Atomic orbital electron populations 1.24403 0.95632 1.02252 0.94416 1.28436 1.01301 1.08545 1.04346 1.19073 0.95258 0.93385 0.94707 1.21481 0.95030 0.97828 0.99135 1.21212 1.00549 0.93608 0.98784 1.20322 0.97108 0.96964 0.96816 1.24795 1.01624 0.86564 1.03950 1.86529 1.73631 1.43781 1.31001 0.85440 0.75743 0.79265 0.79857 1.16733 1.20287 1.18266 1.18557 0.95602 0.89798 0.94933 1.59799 1.25830 1.33761 1.02367 1.22739 0.87504 0.97815 1.01246 1.22745 1.02910 0.95174 0.80366 1.87975 1.31915 1.83264 1.29218 1.22777 0.84138 0.95267 0.99159 1.22891 1.02686 0.97509 0.87437 1.21856 1.00657 0.94020 1.00853 0.77492 0.64887 0.61631 0.66613 1.26354 1.20540 1.05057 1.04753 1.26220 1.05244 1.08504 1.16432 1.26285 1.06317 1.09860 1.14395 0.86038 0.89886 0.83428 0.84286 0.87204 0.77082 0.94525 0.89228 0.92055 0.87128 0.91912 0.86880 0.88804 0.94127 0.86798 0.90526 0.90766 0.91945 0.91060 0.90635 0.90930 0.91725 0.90637 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.22 13.32 66.67 0.89 1.11 16 2 C -0.39 0.55 4.40 23.66 0.10 0.65 16 3 C -0.02 -0.04 5.22 -20.14 -0.11 -0.14 16 4 C -0.12 0.00 8.21 22.54 0.19 0.19 16 5 C -0.12 -0.06 8.64 22.21 0.19 0.13 16 6 C -0.11 -0.26 5.28 -19.69 -0.10 -0.37 16 7 C -0.06 -0.08 2.32 71.23 0.17 0.09 16 8 O -0.54 -1.17 12.88 -148.98 -1.92 -3.09 16 9 Si 0.97 -0.09 25.48 68.60 1.75 1.66 16 10 H -0.24 0.43 6.73 99.48 0.67 1.10 16 11 H -0.28 -1.04 7.11 99.48 0.71 -0.33 16 12 H -0.26 -0.32 7.11 99.48 0.71 0.39 16 13 C 0.10 0.41 4.71 38.18 0.18 0.59 16 14 N -0.50 -1.83 3.93 -694.43 -2.73 -4.56 16 15 C 0.03 0.11 5.40 86.31 0.47 0.57 16 16 C 0.06 0.19 7.01 72.01 0.50 0.69 16 17 O -0.40 -2.52 10.83 -148.98 -1.61 -4.13 16 18 C 0.06 0.12 7.01 72.01 0.50 0.63 16 19 C 0.02 0.05 5.36 86.31 0.46 0.51 16 20 C -0.15 -0.54 7.91 22.66 0.18 -0.36 16 21 Si 1.11 -5.97 11.58 68.60 0.79 -5.17 16 22 C -0.46 1.59 7.82 113.37 0.89 2.48 16 23 C -0.46 2.18 8.65 113.37 0.98 3.16 16 24 C -0.46 1.56 8.65 113.37 0.98 2.54 16 25 H 0.12 -0.68 7.72 -2.91 -0.02 -0.70 16 26 H 0.08 0.00 7.86 -2.91 -0.02 -0.02 16 27 H 0.15 -0.65 6.24 -2.91 -0.02 -0.67 16 28 H 0.14 -0.38 4.86 -2.91 -0.01 -0.40 16 29 H 0.11 0.28 7.78 -2.38 -0.02 0.26 16 30 H 0.38 -1.61 8.70 -74.06 -0.64 -2.26 16 31 H 0.04 0.15 7.42 -2.39 -0.02 0.13 16 32 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 34 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 36 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.04 0.14 7.20 -2.38 -0.02 0.12 16 39 H 0.11 0.46 6.93 -2.91 -0.02 0.44 16 40 H 0.08 -0.34 6.46 -2.39 -0.02 -0.35 16 41 H 0.07 -0.30 7.96 -2.38 -0.02 -0.32 16 42 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 43 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 44 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 45 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 46 H 0.06 -0.13 7.96 -2.39 -0.02 -0.15 16 47 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 48 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 Total: 0.00 -10.81 379.28 3.75 -7.05 By element: Atomic # 1 Polarization: -5.22 SS G_CDS: 1.00 Total: -4.21 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.47 Total: 12.46 kcal Atomic # 7 Polarization: -1.83 SS G_CDS: -2.73 Total: -4.56 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -3.53 Total: -7.22 kcal Atomic # 14 Polarization: -6.05 SS G_CDS: 2.54 Total: -3.51 kcal Total: -10.81 3.75 -7.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419860.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.920 kcal (2) G-P(sol) polarization free energy of solvation -10.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds