Wall clock time and date at job start Mon Mar 8 2021 10:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32609 * 1 3 3 C 1.47740 * 119.99849 * 2 1 4 4 C 1.39468 * 120.16630 * 245.45659 * 3 2 1 5 5 C 1.38001 * 119.90995 * 180.29610 * 4 3 2 6 6 C 1.50697 * 119.87132 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47085 * 299.97741 * 6 5 4 8 8 Si 1.86299 * 109.46923 * 179.97438 * 6 5 4 9 9 H 1.48494 * 109.47354 * 60.00389 * 8 6 5 10 10 H 1.48507 * 109.47157 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47530 * 299.99883 * 8 6 5 12 12 C 1.38375 * 120.25591 * 359.95940 * 5 4 3 13 13 C 1.38245 * 120.35002 * 0.04117 * 12 5 4 14 14 C 1.38499 * 120.08042 * 359.97438 * 13 12 5 15 15 O 1.35828 * 120.12938 * 179.97438 * 14 13 12 16 16 C 1.42904 * 117.00024 * 0.02562 * 15 14 13 17 17 F 1.39896 * 109.47243 * 59.99767 * 16 15 14 18 18 F 1.39900 * 109.47419 * 180.02562 * 16 15 14 19 19 F 1.39904 * 109.47024 * 300.00189 * 16 15 14 20 20 Si 1.86801 * 120.00160 * 179.97438 * 2 1 3 21 21 C 1.86295 * 109.47160 * 185.10714 * 20 2 1 22 22 C 1.86299 * 109.46997 * 305.10754 * 20 2 1 23 23 C 1.86295 * 109.47088 * 65.10665 * 20 2 1 24 24 H 1.08004 * 120.00429 * 5.04004 * 1 2 3 25 25 H 1.08005 * 120.00187 * 185.04357 * 1 2 3 26 26 H 1.07996 * 120.04677 * 0.25730 * 4 3 2 27 27 H 1.08998 * 109.47249 * 59.98173 * 6 5 4 28 28 H 0.96689 * 114.00447 * 300.00268 * 7 6 5 29 29 H 1.08007 * 119.82239 * 180.02562 * 12 5 4 30 30 H 1.07996 * 119.95350 * 179.97438 * 13 12 5 31 31 H 1.08999 * 109.47249 * 54.93512 * 21 20 2 32 32 H 1.08998 * 109.47230 * 174.93581 * 21 20 2 33 33 H 1.09001 * 109.47328 * 294.93071 * 21 20 2 34 34 H 1.08994 * 109.47143 * 60.00107 * 22 20 2 35 35 H 1.08998 * 109.47243 * 180.02562 * 22 20 2 36 36 H 1.08999 * 109.47390 * 299.99860 * 22 20 2 37 37 H 1.09004 * 109.47150 * 59.99778 * 23 20 2 38 38 H 1.08997 * 109.47679 * 180.02562 * 23 20 2 39 39 H 1.09001 * 109.47355 * 300.00427 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0648 1.2795 0.0000 4 6 2.8489 1.6360 -1.0969 5 6 3.5415 2.8296 -1.0887 6 6 4.3891 3.2137 -2.2741 7 8 5.4024 2.2264 -2.4750 8 14 5.1869 4.8671 -1.9573 9 1 6.0409 4.7807 -0.7455 10 1 6.0226 5.2454 -3.1251 11 1 4.1338 5.8931 -1.7485 12 6 3.4606 3.6752 0.0036 13 6 2.6865 3.3324 1.0965 14 6 1.9857 2.1378 1.1036 15 8 1.2253 1.7998 2.1771 16 6 1.1928 2.7245 3.2661 17 9 0.6902 3.9518 2.8210 18 9 0.3692 2.2227 4.2796 19 9 2.4878 2.9039 3.7643 20 14 2.2601 -1.6177 0.0007 21 6 4.0857 -1.2807 0.1569 22 6 1.6958 -2.6599 1.4381 23 6 1.9304 -2.5259 -1.5921 24 1 -0.5401 0.9317 -0.0822 25 1 -0.5401 -0.9317 0.0822 26 1 2.9146 0.9787 -1.9512 27 1 3.7622 3.2773 -3.1635 28 1 5.9986 2.1158 -1.7219 29 1 4.0053 4.6079 0.0024 30 1 2.6282 3.9970 1.9458 31 1 4.2683 -0.6720 1.0425 32 1 4.6230 -2.2247 0.2478 33 1 4.4339 -0.7483 -0.7282 34 1 0.6278 -2.8571 1.3467 35 1 2.2411 -3.6037 1.4388 36 1 1.8887 -2.1286 2.3701 37 1 2.2605 -1.9160 -2.4331 38 1 2.4750 -3.4700 -1.5916 39 1 0.8623 -2.7230 -1.6836 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:42:40 Heat of formation + Delta-G solvation = -217.054229 kcal Electronic energy + Delta-G solvation = -26037.272883 eV Core-core repulsion = 21847.364534 eV Total energy + Delta-G solvation = -4189.908349 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.56470 -49.28041 -49.16291 -41.54914 -39.40482 -37.36341 -35.07584 -32.02351 -30.91474 -29.40384 -28.28705 -28.19528 -27.67411 -26.02813 -24.45807 -23.18446 -21.16247 -20.46941 -20.28152 -19.73608 -18.35157 -17.68113 -17.16426 -16.50771 -16.23516 -16.07993 -15.98139 -15.72996 -15.68423 -15.59470 -15.52897 -15.33241 -15.21012 -14.74110 -14.48099 -14.31027 -14.05846 -13.84530 -13.74808 -13.64141 -13.26845 -13.19232 -13.15904 -12.98250 -12.92537 -12.54796 -12.29135 -12.09244 -11.69672 -11.19256 -11.00517 -10.75645 -10.44548 -10.26907 -9.85847 -9.37631 -0.06248 0.05765 0.36052 1.07133 1.18194 1.44770 1.50609 1.71112 1.81975 1.91287 2.01014 2.22038 2.43080 2.64784 2.70437 2.87559 3.44028 3.53322 3.58799 3.73509 3.93496 4.09383 4.34408 4.57935 4.71621 4.79266 4.83139 4.85436 4.87878 4.89957 4.90494 4.91221 4.93405 4.95629 5.21335 5.33714 5.42118 5.58321 5.65531 5.68328 5.72058 5.86600 6.72000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.390 4.390 3 C -0.036 4.036 4 C -0.057 4.057 5 C -0.129 4.129 6 C -0.071 4.071 7 O -0.547 6.547 8 Si 0.969 3.031 9 H -0.252 1.252 10 H -0.273 1.273 11 H -0.259 1.259 12 C -0.100 4.100 13 C -0.190 4.190 14 C 0.088 3.912 15 O -0.307 6.307 16 C 0.604 3.396 17 F -0.166 7.166 18 F -0.132 7.132 19 F -0.165 7.165 20 Si 1.103 2.897 21 C -0.456 4.456 22 C -0.462 4.462 23 C -0.453 4.453 24 H 0.083 0.917 25 H 0.124 0.876 26 H 0.158 0.842 27 H 0.132 0.868 28 H 0.389 0.611 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 -1.244 -1.603 2.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.428 4.428 3 C -0.037 4.037 4 C -0.075 4.075 5 C -0.130 4.130 6 C -0.182 4.182 7 O -0.354 6.354 8 Si 0.795 3.205 9 H -0.176 1.176 10 H -0.198 1.198 11 H -0.183 1.183 12 C -0.118 4.118 13 C -0.208 4.208 14 C 0.046 3.954 15 O -0.227 6.227 16 C 0.513 3.487 17 F -0.148 7.148 18 F -0.113 7.113 19 F -0.147 7.147 20 Si 1.291 2.709 21 C -0.564 4.564 22 C -0.568 4.568 23 C -0.561 4.561 24 H 0.101 0.899 25 H 0.142 0.858 26 H 0.176 0.824 27 H 0.150 0.850 28 H 0.238 0.762 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.600 -0.552 -1.941 2.105 hybrid contribution -0.212 0.367 1.128 1.205 sum 0.388 -0.184 -0.813 0.920 Atomic orbital electron populations 1.24362 0.95435 1.02330 0.93103 1.28231 1.01266 1.07630 1.05722 1.18537 0.99671 0.94279 0.91189 1.21179 0.93179 0.96120 0.97034 1.20430 1.00257 0.95763 0.96510 1.24904 0.92148 1.02137 0.99001 1.86494 1.44154 1.59766 1.44946 0.85399 0.79739 0.75539 0.79870 1.17608 1.19772 1.18285 1.21003 0.98368 0.99856 0.92527 1.21494 1.01135 0.96397 1.01800 1.18975 0.94480 0.95498 0.86446 1.86433 1.66758 1.44258 1.25243 1.19366 0.74789 0.75707 0.78821 1.93302 1.87601 1.44824 1.89108 1.93318 1.72238 1.87825 1.57949 1.93305 1.38462 1.94866 1.88105 0.77559 0.64942 0.61666 0.66756 1.26225 1.20561 1.05060 1.04528 1.26283 1.06331 1.09786 1.14411 1.26179 1.05322 1.08423 1.16164 0.89895 0.85796 0.82416 0.85023 0.76164 0.84385 0.84469 0.92243 0.90768 0.90488 0.90914 0.90647 0.91957 0.90802 0.90661 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.11 13.29 66.66 0.89 0.99 16 2 C -0.39 0.26 3.83 23.62 0.09 0.35 16 3 C -0.04 -0.06 4.83 -20.03 -0.10 -0.16 16 4 C -0.06 0.03 8.91 22.51 0.20 0.24 16 5 C -0.13 0.12 5.39 -19.89 -0.11 0.02 16 6 C -0.07 0.24 2.82 71.23 0.20 0.44 16 7 O -0.55 1.43 12.76 -148.98 -1.90 -0.47 16 8 Si 0.97 -2.29 25.06 68.60 1.72 -0.57 16 9 H -0.25 0.52 7.11 99.48 0.71 1.23 16 10 H -0.27 -0.32 7.11 99.48 0.71 0.39 16 11 H -0.26 0.25 7.11 99.48 0.71 0.95 16 12 C -0.10 -0.04 8.66 22.30 0.19 0.15 16 13 C -0.19 -0.53 8.25 22.33 0.18 -0.34 16 14 C 0.09 0.36 6.45 22.77 0.15 0.50 16 15 O -0.31 -1.47 9.56 -91.62 -0.88 -2.35 16 16 C 0.60 2.12 3.42 113.37 0.39 2.51 16 17 F -0.17 -0.59 15.57 44.97 0.70 0.11 16 18 F -0.13 -0.50 17.53 44.97 0.79 0.29 16 19 F -0.17 -0.55 15.56 44.97 0.70 0.15 16 20 Si 1.10 -4.95 12.13 68.60 0.83 -4.12 16 21 C -0.46 1.20 8.55 113.37 0.97 2.17 16 22 C -0.46 1.05 8.65 113.37 0.98 2.03 16 23 C -0.45 1.99 8.65 113.37 0.98 2.97 16 24 H 0.08 0.07 8.05 -2.91 -0.02 0.05 16 25 H 0.12 -0.62 7.73 -2.91 -0.02 -0.64 16 26 H 0.16 -0.60 8.06 -2.91 -0.02 -0.63 16 27 H 0.13 -0.73 7.96 -2.39 -0.02 -0.75 16 28 H 0.39 -3.25 8.70 -74.06 -0.64 -3.90 16 29 H 0.14 -0.32 4.85 -2.91 -0.01 -0.34 16 30 H 0.14 0.23 5.09 -2.91 -0.01 0.22 16 31 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 32 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 33 H 0.08 -0.25 7.90 -2.39 -0.02 -0.27 16 34 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 36 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 37 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 38 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 39 H 0.07 -0.34 7.96 -2.39 -0.02 -0.35 16 Total: 0.00 -8.86 343.26 8.17 -0.69 By element: Atomic # 1 Polarization: -6.76 SS G_CDS: 1.19 Total: -5.57 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.02 Total: 11.85 kcal Atomic # 8 Polarization: -0.04 SS G_CDS: -2.78 Total: -2.82 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 2.19 Total: 0.54 kcal Atomic # 14 Polarization: -7.24 SS G_CDS: 2.55 Total: -4.68 kcal Total: -8.86 8.17 -0.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.365 kcal (2) G-P(sol) polarization free energy of solvation -8.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds