Wall clock time and date at job start Mon Mar 8 2021 10:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32560 * 1 3 3 C 1.47816 * 120.00492 * 2 1 4 4 C 1.39461 * 120.08770 * 294.00004 * 3 2 1 5 5 C 1.50699 * 120.04277 * 359.97438 * 4 3 2 6 6 O 1.42899 * 109.47123 * 239.43314 * 5 4 3 7 7 Si 1.86303 * 109.47491 * 119.43223 * 5 4 3 8 8 H 1.48499 * 109.47110 * 185.43247 * 7 5 4 9 9 H 1.48498 * 109.47131 * 305.43613 * 7 5 4 10 10 H 1.48501 * 109.46730 * 65.43318 * 7 5 4 11 11 C 1.38538 * 119.91423 * 179.70319 * 4 3 2 12 12 O 1.35901 * 119.95535 * 180.27909 * 11 4 3 13 13 C 1.42903 * 116.99838 * 179.97438 * 12 11 4 14 14 C 1.38715 * 120.08578 * 0.24763 * 11 4 3 15 15 C 1.38751 * 120.17567 * 0.03295 * 14 11 4 16 16 O 1.35907 * 119.95367 * 180.02562 * 15 14 11 17 17 C 1.42908 * 117.00009 * 359.97438 * 16 15 14 18 18 C 1.38494 * 120.09133 * 359.97438 * 15 14 11 19 19 Si 1.86811 * 119.99670 * 179.97438 * 2 1 3 20 20 C 1.86295 * 109.47119 * 274.84096 * 19 2 1 21 21 C 1.86302 * 109.47022 * 34.84247 * 19 2 1 22 22 C 1.86299 * 109.46625 * 154.84077 * 19 2 1 23 23 H 1.08002 * 120.00035 * 184.80940 * 1 2 3 24 24 H 1.08002 * 119.99720 * 4.80972 * 1 2 3 25 25 H 1.09003 * 109.47444 * 359.43190 * 5 4 3 26 26 H 0.96700 * 114.00406 * 293.97943 * 6 5 4 27 27 H 1.09000 * 109.47359 * 179.97438 * 13 12 11 28 28 H 1.08996 * 109.47352 * 300.00064 * 13 12 11 29 29 H 1.09007 * 109.47134 * 59.99783 * 13 12 11 30 30 H 1.07993 * 119.90674 * 179.97438 * 14 11 4 31 31 H 1.08992 * 109.47291 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47093 * 300.01199 * 17 16 15 33 33 H 1.09007 * 109.46656 * 60.00473 * 17 16 15 34 34 H 1.08007 * 120.04229 * 180.02562 * 18 15 14 35 35 H 1.09004 * 109.47217 * 60.00400 * 20 19 2 36 36 H 1.09002 * 109.47168 * 180.02562 * 20 19 2 37 37 H 1.08997 * 109.47397 * 300.00046 * 20 19 2 38 38 H 1.08999 * 109.46687 * 59.99671 * 21 19 2 39 39 H 1.09002 * 109.46781 * 179.97438 * 21 19 2 40 40 H 1.08999 * 109.46973 * 299.99874 * 21 19 2 41 41 H 1.08998 * 109.47321 * 65.06307 * 22 19 2 42 42 H 1.09011 * 109.46513 * 185.05656 * 22 19 2 43 43 H 1.08994 * 109.47701 * 305.05631 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 1.9894 2.1310 -1.1024 5 6 1.1542 1.7466 -2.2964 6 8 1.9851 1.6794 -3.4571 7 14 -0.1779 3.0222 -2.5593 8 1 -1.0800 2.5779 -3.6520 9 1 -0.9599 3.1864 -1.3076 10 1 0.4446 4.3191 -2.9278 11 6 2.6787 3.3326 -1.0960 12 8 2.6013 4.1651 -2.1675 13 6 3.3369 5.3879 -2.0934 14 6 3.4473 3.6876 0.0028 15 6 3.5296 2.8411 1.0991 16 8 4.2836 3.1936 2.1735 17 6 4.9639 4.4485 2.1051 18 6 2.8436 1.6380 1.1005 19 14 2.2596 -1.6179 0.0007 20 6 2.4417 -2.2290 1.7511 21 6 1.3215 -2.8769 -1.0022 22 6 3.9469 -1.3611 -0.7461 23 1 -0.5400 -0.9320 0.0784 24 1 -0.5400 0.9321 -0.0784 25 1 0.6957 0.7733 -2.1211 26 1 2.3532 2.5319 -3.7273 27 1 3.1891 5.9571 -3.0112 28 1 2.9861 5.9721 -1.2427 29 1 4.3973 5.1672 -1.9700 30 1 3.9838 4.6248 0.0045 31 1 5.5278 4.6067 3.0243 32 1 5.6472 4.4455 1.2559 33 1 4.2356 5.2503 1.9826 34 1 2.9079 0.9799 1.9545 35 1 1.4544 -2.3793 2.1881 36 1 2.9870 -3.1728 1.7516 37 1 2.9905 -1.4925 2.3379 38 1 1.2150 -2.5192 -2.0263 39 1 1.8667 -3.8207 -1.0022 40 1 0.3343 -3.0270 -0.5653 41 1 4.5280 -0.6934 -0.1100 42 1 4.4577 -2.3206 -0.8283 43 1 3.8423 -0.9192 -1.7370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:45:27 Heat of formation + Delta-G solvation = -105.883660 kcal Electronic energy + Delta-G solvation = -23231.748781 eV Core-core repulsion = 19980.803266 eV Total energy + Delta-G solvation = -3250.945515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74066 -39.93519 -38.58065 -37.03170 -34.34556 -31.76829 -30.48531 -29.44510 -28.95936 -28.38972 -28.21856 -28.02800 -25.92394 -23.67051 -22.54761 -20.78195 -18.95481 -18.37375 -17.83123 -17.15024 -17.11866 -16.66907 -16.49986 -15.96220 -15.77518 -15.32463 -14.96283 -14.72585 -14.27048 -14.11100 -13.95855 -13.85879 -13.69529 -13.61478 -13.47574 -13.26048 -13.14295 -12.98843 -12.90604 -12.79035 -12.71370 -12.27419 -12.19710 -11.96467 -11.82411 -11.27756 -11.11102 -10.80732 -10.77675 -10.33647 -10.16565 -9.31960 -8.82779 0.18017 0.44068 1.01627 1.32567 1.60716 1.64991 1.76389 1.93896 2.07466 2.13382 2.23147 2.32630 2.60031 2.82039 3.70866 3.72420 3.89656 3.97068 4.02332 4.11962 4.14820 4.17463 4.22892 4.27657 4.46048 4.49367 4.67587 4.72829 4.76269 4.77999 4.80953 4.82193 4.84048 4.92110 4.94904 5.15283 5.20189 5.27517 5.50381 5.54329 5.59760 5.63849 5.71793 5.77781 6.11212 6.46368 6.77578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.371 4.371 3 C 0.058 3.942 4 C -0.179 4.179 5 C -0.063 4.063 6 O -0.537 6.537 7 Si 0.926 3.074 8 H -0.252 1.252 9 H -0.254 1.254 10 H -0.232 1.232 11 C 0.169 3.831 12 O -0.316 6.316 13 C 0.025 3.975 14 C -0.299 4.299 15 C 0.171 3.829 16 O -0.312 6.312 17 C 0.026 3.974 18 C -0.183 4.183 19 Si 1.054 2.946 20 C -0.448 4.448 21 C -0.449 4.449 22 C -0.446 4.446 23 H 0.112 0.888 24 H 0.096 0.904 25 H 0.119 0.881 26 H 0.374 0.626 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.136 0.864 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.137 0.863 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 1.935 0.847 2.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.411 4.411 3 C 0.058 3.942 4 C -0.181 4.181 5 C -0.174 4.174 6 O -0.342 6.342 7 Si 0.747 3.253 8 H -0.175 1.175 9 H -0.178 1.178 10 H -0.155 1.155 11 C 0.123 3.877 12 O -0.230 6.230 13 C -0.070 4.070 14 C -0.319 4.319 15 C 0.125 3.875 16 O -0.225 6.225 17 C -0.069 4.069 18 C -0.202 4.202 19 Si 1.245 2.755 20 C -0.555 4.555 21 C -0.557 4.557 22 C -0.554 4.554 23 H 0.130 0.870 24 H 0.114 0.886 25 H 0.137 0.863 26 H 0.222 0.778 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.155 0.845 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.046 1.899 0.756 2.044 hybrid contribution 0.768 1.052 0.182 1.315 sum 0.814 2.951 0.938 3.202 Atomic orbital electron populations 1.24345 0.95326 1.02350 0.94325 1.27983 1.01039 1.07821 1.04247 1.18263 0.93064 0.91918 0.90982 1.19546 1.05699 0.93897 0.98919 1.24750 0.99057 1.09587 0.83975 1.86477 1.67897 1.35998 1.43849 0.86099 0.77990 0.79796 0.81386 1.17530 1.17828 1.15480 1.18373 0.93876 0.89327 0.86093 1.86086 1.67698 1.30968 1.38233 1.23108 0.95870 0.84077 1.03923 1.21214 1.10501 1.03904 0.96244 1.18617 0.90170 0.93092 0.85591 1.86112 1.60072 1.38488 1.37863 1.23100 0.96224 0.83721 1.03846 1.20315 1.02498 0.96830 1.00545 0.78324 0.66521 0.62979 0.67680 1.26120 1.04713 1.06202 1.18478 1.26137 1.08434 1.11622 1.09471 1.26069 1.17208 1.04582 1.07571 0.87029 0.88585 0.86339 0.77849 0.87793 0.92513 0.92298 0.84675 0.87878 0.92559 0.92621 0.84522 0.91131 0.91001 0.91051 0.90797 0.90851 0.91153 0.91205 0.91279 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.07 12.01 28.82 0.35 0.42 16 2 C -0.37 -0.11 3.17 -37.57 -0.12 -0.23 16 3 C 0.06 0.12 4.89 -105.06 -0.51 -0.39 16 4 C -0.18 -0.48 4.57 -104.06 -0.48 -0.96 16 5 C -0.06 -0.14 2.47 36.01 0.09 -0.05 16 6 O -0.54 -1.55 12.91 -40.77 -0.53 -2.08 16 7 Si 0.93 1.91 26.30 -169.99 -4.47 -2.56 16 8 H -0.25 -0.69 7.11 56.52 0.40 -0.29 16 9 H -0.25 -0.67 7.11 56.52 0.40 -0.27 16 10 H -0.23 -0.50 6.15 56.52 0.35 -0.15 16 11 C 0.17 0.39 6.08 -39.29 -0.24 0.15 16 12 O -0.32 -0.35 5.90 -24.97 -0.15 -0.49 16 13 C 0.02 -0.05 9.81 101.05 0.99 0.94 16 14 C -0.30 -0.51 8.02 -39.22 -0.31 -0.82 16 15 C 0.17 0.44 6.68 -39.30 -0.26 0.18 16 16 O -0.31 -0.69 10.49 -19.45 -0.20 -0.89 16 17 C 0.03 -0.04 9.81 101.05 0.99 0.96 16 18 C -0.18 -0.43 9.35 -39.02 -0.36 -0.80 16 19 Si 1.05 -1.31 12.10 -169.99 -2.06 -3.37 16 20 C -0.45 0.41 8.65 101.05 0.87 1.28 16 21 C -0.45 0.48 8.65 101.05 0.87 1.35 16 22 C -0.45 -0.22 8.65 101.05 0.87 0.65 16 23 H 0.11 -0.30 7.58 -52.49 -0.40 -0.70 16 24 H 0.10 -0.02 7.88 -52.49 -0.41 -0.44 16 25 H 0.12 0.15 5.29 -51.93 -0.27 -0.12 16 26 H 0.37 0.34 6.91 45.56 0.31 0.66 16 27 H 0.10 -0.37 8.14 -51.93 -0.42 -0.79 16 28 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 29 H 0.06 -0.16 7.65 -51.93 -0.40 -0.56 16 30 H 0.14 -0.07 4.49 -52.49 -0.24 -0.31 16 31 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 32 H 0.06 -0.12 7.65 -51.93 -0.40 -0.52 16 33 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16 34 H 0.14 0.16 8.06 -52.48 -0.42 -0.26 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 36 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 37 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 38 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 40 H 0.07 -0.12 7.81 -51.93 -0.41 -0.53 16 41 H 0.07 0.07 7.96 -51.93 -0.41 -0.34 16 42 H 0.07 -0.01 7.96 -51.92 -0.41 -0.42 16 43 H 0.07 0.12 7.96 -51.93 -0.41 -0.30 16 LS Contribution 349.52 15.07 5.27 5.27 Total: 0.00 -5.15 349.52 -5.82 -10.96 By element: Atomic # 1 Polarization: -3.09 SS G_CDS: -6.43 Total: -9.52 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 2.75 Total: 2.69 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: -0.88 Total: -3.47 kcal Atomic # 14 Polarization: 0.60 SS G_CDS: -6.53 Total: -5.93 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -5.15 -5.82 -10.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.922 kcal (2) G-P(sol) polarization free energy of solvation -5.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds