Wall clock time and date at job start Mon Mar 8 2021 10:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32560 * 1 3 3 C 1.47816 * 120.00492 * 2 1 4 4 C 1.39461 * 120.08770 * 294.00004 * 3 2 1 5 5 C 1.50699 * 120.04277 * 359.97438 * 4 3 2 6 6 O 1.42899 * 109.47123 * 239.43314 * 5 4 3 7 7 Si 1.86303 * 109.47491 * 119.43223 * 5 4 3 8 8 H 1.48499 * 109.47110 * 185.43247 * 7 5 4 9 9 H 1.48498 * 109.47131 * 305.43613 * 7 5 4 10 10 H 1.48501 * 109.46730 * 65.43318 * 7 5 4 11 11 C 1.38538 * 119.91423 * 179.70319 * 4 3 2 12 12 O 1.35901 * 119.95535 * 180.27909 * 11 4 3 13 13 C 1.42903 * 116.99838 * 179.97438 * 12 11 4 14 14 C 1.38715 * 120.08578 * 0.24763 * 11 4 3 15 15 C 1.38751 * 120.17567 * 0.03295 * 14 11 4 16 16 O 1.35907 * 119.95367 * 180.02562 * 15 14 11 17 17 C 1.42908 * 117.00009 * 359.97438 * 16 15 14 18 18 C 1.38494 * 120.09133 * 359.97438 * 15 14 11 19 19 Si 1.86811 * 119.99670 * 179.97438 * 2 1 3 20 20 C 1.86295 * 109.47119 * 274.84096 * 19 2 1 21 21 C 1.86302 * 109.47022 * 34.84247 * 19 2 1 22 22 C 1.86299 * 109.46625 * 154.84077 * 19 2 1 23 23 H 1.08002 * 120.00035 * 184.80940 * 1 2 3 24 24 H 1.08002 * 119.99720 * 4.80972 * 1 2 3 25 25 H 1.09003 * 109.47444 * 359.43190 * 5 4 3 26 26 H 0.96700 * 114.00406 * 293.97943 * 6 5 4 27 27 H 1.09000 * 109.47359 * 179.97438 * 13 12 11 28 28 H 1.08996 * 109.47352 * 300.00064 * 13 12 11 29 29 H 1.09007 * 109.47134 * 59.99783 * 13 12 11 30 30 H 1.07993 * 119.90674 * 179.97438 * 14 11 4 31 31 H 1.08992 * 109.47291 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.47093 * 300.01199 * 17 16 15 33 33 H 1.09007 * 109.46656 * 60.00473 * 17 16 15 34 34 H 1.08007 * 120.04229 * 180.02562 * 18 15 14 35 35 H 1.09004 * 109.47217 * 60.00400 * 20 19 2 36 36 H 1.09002 * 109.47168 * 180.02562 * 20 19 2 37 37 H 1.08997 * 109.47397 * 300.00046 * 20 19 2 38 38 H 1.08999 * 109.46687 * 59.99671 * 21 19 2 39 39 H 1.09002 * 109.46781 * 179.97438 * 21 19 2 40 40 H 1.08999 * 109.46973 * 299.99874 * 21 19 2 41 41 H 1.08998 * 109.47321 * 65.06307 * 22 19 2 42 42 H 1.09011 * 109.46513 * 185.05656 * 22 19 2 43 43 H 1.08994 * 109.47701 * 305.05631 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 1.9894 2.1310 -1.1024 5 6 1.1542 1.7466 -2.2964 6 8 1.9851 1.6794 -3.4571 7 14 -0.1779 3.0222 -2.5593 8 1 -1.0800 2.5779 -3.6520 9 1 -0.9599 3.1864 -1.3076 10 1 0.4446 4.3191 -2.9278 11 6 2.6787 3.3326 -1.0960 12 8 2.6013 4.1651 -2.1675 13 6 3.3369 5.3879 -2.0934 14 6 3.4473 3.6876 0.0028 15 6 3.5296 2.8411 1.0991 16 8 4.2836 3.1936 2.1735 17 6 4.9639 4.4485 2.1051 18 6 2.8436 1.6380 1.1005 19 14 2.2596 -1.6179 0.0007 20 6 2.4417 -2.2290 1.7511 21 6 1.3215 -2.8769 -1.0022 22 6 3.9469 -1.3611 -0.7461 23 1 -0.5400 -0.9320 0.0784 24 1 -0.5400 0.9321 -0.0784 25 1 0.6957 0.7733 -2.1211 26 1 2.3532 2.5319 -3.7273 27 1 3.1891 5.9571 -3.0112 28 1 2.9861 5.9721 -1.2427 29 1 4.3973 5.1672 -1.9700 30 1 3.9838 4.6248 0.0045 31 1 5.5278 4.6067 3.0243 32 1 5.6472 4.4455 1.2559 33 1 4.2356 5.2503 1.9826 34 1 2.9079 0.9799 1.9545 35 1 1.4544 -2.3793 2.1881 36 1 2.9870 -3.1728 1.7516 37 1 2.9905 -1.4925 2.3379 38 1 1.2150 -2.5192 -2.0263 39 1 1.8667 -3.8207 -1.0022 40 1 0.3343 -3.0270 -0.5653 41 1 4.5280 -0.6934 -0.1100 42 1 4.4577 -2.3206 -0.8283 43 1 3.8423 -0.9192 -1.7370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419872.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:45:26 Heat of formation + Delta-G solvation = -98.194229 kcal Electronic energy + Delta-G solvation = -23231.415342 eV Core-core repulsion = 19980.803266 eV Total energy + Delta-G solvation = -3250.612076 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.80284 -39.98145 -38.63345 -37.17885 -34.34769 -31.84375 -30.52268 -29.39063 -28.88186 -28.29700 -28.18795 -27.97859 -26.00245 -23.69298 -22.64684 -20.79665 -18.97032 -18.47620 -17.92586 -17.18520 -17.16783 -16.74744 -16.48871 -15.93952 -15.79383 -15.42369 -15.00653 -14.82264 -14.31686 -14.05811 -13.94226 -13.84466 -13.68114 -13.57776 -13.44430 -13.17104 -13.10770 -12.94901 -12.87270 -12.74332 -12.67200 -12.30654 -12.23193 -12.11882 -11.92129 -11.35443 -11.06775 -10.78113 -10.75608 -10.49547 -10.12990 -9.38668 -8.94345 0.09750 0.31815 1.05353 1.17287 1.42836 1.47051 1.82060 1.90339 2.02232 2.20210 2.22942 2.35133 2.59575 2.77442 3.61952 3.68757 3.83440 3.94641 4.06961 4.21254 4.24485 4.29652 4.32470 4.36054 4.56308 4.66362 4.67619 4.71486 4.81007 4.84092 4.85084 4.89874 4.91546 4.92840 4.95464 5.07302 5.18223 5.23781 5.43040 5.59480 5.60122 5.69259 5.71573 5.78955 6.09075 6.41352 6.67785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.390 4.390 3 C 0.055 3.945 4 C -0.199 4.199 5 C -0.064 4.064 6 O -0.548 6.548 7 Si 0.947 3.053 8 H -0.262 1.262 9 H -0.265 1.265 10 H -0.233 1.233 11 C 0.162 3.838 12 O -0.325 6.325 13 C 0.015 3.985 14 C -0.305 4.305 15 C 0.160 3.840 16 O -0.330 6.330 17 C 0.017 3.983 18 C -0.199 4.199 19 Si 1.107 2.893 20 C -0.455 4.455 21 C -0.455 4.455 22 C -0.462 4.462 23 H 0.136 0.864 24 H 0.089 0.911 25 H 0.125 0.875 26 H 0.380 0.620 27 H 0.120 0.880 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.154 0.846 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 1.889 1.005 2.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.429 4.429 3 C 0.054 3.946 4 C -0.200 4.200 5 C -0.174 4.174 6 O -0.355 6.355 7 Si 0.770 3.230 8 H -0.186 1.186 9 H -0.189 1.189 10 H -0.156 1.156 11 C 0.116 3.884 12 O -0.239 6.239 13 C -0.079 4.079 14 C -0.324 4.324 15 C 0.114 3.886 16 O -0.243 6.243 17 C -0.077 4.077 18 C -0.218 4.218 19 Si 1.294 2.706 20 C -0.563 4.563 21 C -0.563 4.563 22 C -0.568 4.568 23 H 0.154 0.846 24 H 0.108 0.892 25 H 0.142 0.858 26 H 0.229 0.771 27 H 0.138 0.862 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.172 0.828 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.118 1.882 0.906 2.092 hybrid contribution 0.870 1.137 0.133 1.437 sum 0.752 3.019 1.039 3.280 Atomic orbital electron populations 1.24575 0.95112 1.03258 0.93139 1.28295 1.01563 1.07752 1.05274 1.18500 0.92904 0.92500 0.90667 1.19725 1.06434 0.94519 0.99308 1.24801 0.98926 1.09971 0.83701 1.86446 1.68127 1.36765 1.44189 0.85798 0.77311 0.79616 0.80259 1.18608 1.18909 1.15635 1.18520 0.93800 0.89507 0.86531 1.86066 1.68203 1.31776 1.37876 1.23371 0.96187 0.83179 1.05159 1.21399 1.10586 1.04575 0.95820 1.18819 0.90366 0.93419 0.86015 1.86086 1.60257 1.40069 1.37934 1.23349 0.96540 0.82700 1.05098 1.20512 1.03049 0.97249 1.01001 0.77526 0.64368 0.61799 0.66893 1.26198 1.05100 1.06273 1.18688 1.26188 1.09165 1.11680 1.09258 1.26309 1.19260 1.04412 1.06852 0.84595 0.89237 0.85763 0.77090 0.86151 0.91867 0.91424 0.82841 0.86358 0.91738 0.91755 0.84043 0.90466 0.90688 0.91489 0.91215 0.90558 0.90013 0.92156 0.90855 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.17 12.01 66.67 0.80 0.97 16 2 C -0.39 -0.37 3.17 23.66 0.07 -0.30 16 3 C 0.05 0.29 4.89 -20.15 -0.10 0.19 16 4 C -0.20 -1.26 4.57 -19.50 -0.09 -1.35 16 5 C -0.06 -0.33 2.47 71.24 0.18 -0.15 16 6 O -0.55 -3.63 12.91 -143.68 -1.86 -5.49 16 7 Si 0.95 4.53 26.30 68.60 1.80 6.34 16 8 H -0.26 -1.60 7.11 99.48 0.71 -0.89 16 9 H -0.26 -1.63 7.11 99.48 0.71 -0.93 16 10 H -0.23 -1.09 6.15 99.48 0.61 -0.48 16 11 C 0.16 0.87 6.08 22.46 0.14 1.01 16 12 O -0.33 -0.82 5.90 -87.14 -0.51 -1.33 16 13 C 0.01 -0.06 9.81 113.37 1.11 1.05 16 14 C -0.30 -1.20 8.02 22.51 0.18 -1.02 16 15 C 0.16 0.99 6.68 22.45 0.15 1.14 16 16 O -0.33 -1.68 10.49 -92.50 -0.97 -2.65 16 17 C 0.02 -0.05 9.81 113.37 1.11 1.06 16 18 C -0.20 -1.20 9.35 22.63 0.21 -0.98 16 19 Si 1.11 -2.68 12.10 68.60 0.83 -1.85 16 20 C -0.46 0.96 8.65 113.37 0.98 1.94 16 21 C -0.45 1.31 8.65 113.37 0.98 2.29 16 22 C -0.46 -1.00 8.65 113.37 0.98 -0.02 16 23 H 0.14 -0.92 7.58 -2.91 -0.02 -0.94 16 24 H 0.09 -0.01 7.88 -2.91 -0.02 -0.03 16 25 H 0.12 0.40 5.29 -2.39 -0.01 0.39 16 26 H 0.38 1.03 6.91 -74.06 -0.51 0.52 16 27 H 0.12 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.06 -0.35 7.66 -2.39 -0.02 -0.36 16 29 H 0.07 -0.40 7.65 -2.38 -0.02 -0.42 16 30 H 0.15 -0.18 4.49 -2.91 -0.01 -0.19 16 31 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.06 -0.29 7.65 -2.39 -0.02 -0.31 16 33 H 0.06 -0.30 7.66 -2.38 -0.02 -0.32 16 34 H 0.14 0.53 8.06 -2.91 -0.02 0.51 16 35 H 0.08 -0.25 7.96 -2.38 -0.02 -0.27 16 36 H 0.07 -0.20 7.96 -2.39 -0.02 -0.21 16 37 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 38 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 39 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 40 H 0.08 -0.41 7.81 -2.39 -0.02 -0.42 16 41 H 0.06 0.23 7.96 -2.39 -0.02 0.21 16 42 H 0.07 0.05 7.96 -2.38 -0.02 0.03 16 43 H 0.06 0.29 7.96 -2.39 -0.02 0.27 16 Total: 0.00 -12.38 349.52 7.14 -5.24 By element: Atomic # 1 Polarization: -7.20 SS G_CDS: 1.14 Total: -6.06 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 6.71 Total: 5.81 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -3.34 Total: -9.47 kcal Atomic # 14 Polarization: 1.85 SS G_CDS: 2.63 Total: 4.49 kcal Total: -12.38 7.14 -5.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419872.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.955 kcal (2) G-P(sol) polarization free energy of solvation -12.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds