Wall clock time and date at job start Mon Mar 8 2021 10:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33059 * 1 3 3 C 1.46981 * 120.00050 * 2 1 4 4 C 1.36352 * 125.15101 * 359.71728 * 3 2 1 5 5 C 1.37202 * 114.71232 * 179.79191 * 4 3 2 6 6 C 1.36360 * 114.71115 * 0.50114 * 5 4 3 7 7 C 1.46978 * 125.15208 * 179.75441 * 6 5 4 8 8 C 1.33067 * 120.00279 * 151.37201 * 7 6 5 9 9 C 1.50700 * 119.99606 * 350.86477 * 8 7 6 10 10 C 1.50697 * 119.99792 * 170.86893 * 8 7 6 11 11 O 1.42902 * 109.46854 * 120.00129 * 10 8 7 12 12 Si 1.86302 * 109.46750 * 239.99353 * 10 8 7 13 13 H 1.48503 * 109.46926 * 60.00497 * 12 10 8 14 14 H 1.48499 * 109.47029 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47714 * 300.00408 * 12 10 8 16 16 S 1.75832 * 109.69651 * 359.72553 * 6 5 4 17 17 Si 1.86808 * 120.00011 * 179.97438 * 2 1 3 18 18 C 1.86294 * 109.47350 * 270.00344 * 17 2 1 19 19 C 1.86303 * 109.46823 * 150.00130 * 17 2 1 20 20 C 1.86297 * 109.46890 * 30.00419 * 17 2 1 21 21 H 1.07996 * 120.00175 * 0.02562 * 1 2 3 22 22 H 1.07997 * 119.99969 * 180.02562 * 1 2 3 23 23 H 1.07996 * 122.64693 * 359.97438 * 4 3 2 24 24 H 1.07997 * 122.64731 * 180.24848 * 5 4 3 25 25 H 1.08002 * 120.00031 * 331.36661 * 7 6 5 26 26 H 1.09004 * 109.47090 * 84.21045 * 9 8 7 27 27 H 1.08998 * 109.47168 * 204.20369 * 9 8 7 28 28 H 1.08991 * 109.47439 * 324.20870 * 9 8 7 29 29 H 1.08994 * 109.47779 * 359.97438 * 10 8 7 30 30 H 0.96698 * 114.00230 * 60.00074 * 11 10 8 31 31 H 1.09009 * 109.47130 * 300.00329 * 18 17 2 32 32 H 1.09001 * 109.46970 * 59.99604 * 18 17 2 33 33 H 1.08995 * 109.47190 * 180.02562 * 18 17 2 34 34 H 1.09002 * 109.46883 * 180.02562 * 19 17 2 35 35 H 1.09001 * 109.47119 * 300.00073 * 19 17 2 36 36 H 1.09000 * 109.46817 * 60.00461 * 19 17 2 37 37 H 1.09004 * 109.47356 * 299.99810 * 20 17 2 38 38 H 1.09001 * 109.47416 * 59.99704 * 20 17 2 39 39 H 1.09002 * 109.47047 * 179.97438 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3306 0.0000 0.0000 3 6 2.0655 1.2729 0.0000 4 6 1.4925 2.5102 -0.0055 5 6 2.3825 3.5544 0.0003 6 6 3.6950 3.1848 -0.0003 7 6 4.8353 4.1122 0.0000 8 6 5.9898 3.7470 0.5516 9 6 6.0721 2.4740 1.3540 10 6 7.2149 4.6064 0.3739 11 8 7.6860 5.0345 1.6533 12 14 8.5459 3.6213 -0.4800 13 1 8.0563 3.1763 -1.8095 14 1 9.7533 4.4679 -0.6545 15 1 8.8890 2.4344 0.3438 16 16 3.8167 1.4307 -0.0006 17 14 2.2646 -1.6178 0.0007 18 6 2.5751 -2.1549 1.7573 19 6 3.8925 -1.3953 -0.8776 20 6 1.2578 -2.9165 -0.8770 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 0.4226 2.6567 -0.0108 24 1 2.0682 4.5877 0.0008 25 1 4.7361 5.0901 -0.4476 26 1 6.2323 1.6307 0.6821 27 1 6.9022 2.5408 2.0573 28 1 5.1416 2.3297 1.9029 29 1 6.9633 5.4773 -0.2311 30 1 7.9292 4.3099 2.2456 31 1 3.1641 -1.3950 2.2710 32 1 1.6226 -2.2850 2.2712 33 1 3.1204 -3.0986 1.7577 34 1 4.4373 -2.3394 -0.8776 35 1 3.7108 -1.0811 -1.9054 36 1 4.4815 -0.6355 -0.3640 37 1 0.3053 -3.0466 -0.3632 38 1 1.0761 -2.6022 -1.9048 39 1 1.8030 -3.8603 -0.8770 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:46:57 Heat of formation + Delta-G solvation = -23.218602 kcal Electronic energy + Delta-G solvation = -17769.785211 eV Core-core repulsion = 15120.714812 eV Total energy + Delta-G solvation = -2649.070399 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.18749 -38.42145 -35.99484 -34.06535 -29.94279 -29.65006 -28.73511 -28.48862 -28.26919 -26.52822 -24.47721 -21.85863 -20.41241 -18.68007 -18.32290 -17.50085 -16.64856 -16.24788 -16.03624 -15.11631 -15.02444 -14.62292 -14.43514 -14.31790 -14.26437 -14.02605 -13.92084 -13.65208 -13.58225 -13.47294 -13.36004 -13.21558 -13.06340 -13.01987 -12.54744 -12.35810 -12.13307 -11.81747 -11.70048 -11.40855 -10.97290 -10.90328 -10.80445 -10.54722 -9.97273 -9.28710 -8.51594 -0.51428 0.56801 0.84213 1.10846 1.17201 1.42142 1.43103 1.59516 1.61043 1.72223 1.91884 2.02301 2.33478 2.45878 3.45759 3.61187 3.82726 3.98605 4.18883 4.44294 4.49675 4.52708 4.61145 4.63204 4.64230 4.65596 4.66175 4.68912 4.70288 4.71532 4.84958 4.93151 5.07660 5.22670 5.36888 5.40515 5.43316 5.47684 5.48267 5.61631 5.72094 5.76767 6.51296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.342 4.342 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.120 4.120 6 C -0.180 4.180 7 C -0.070 4.070 8 C -0.155 4.155 9 C -0.136 4.136 10 C -0.077 4.077 11 O -0.538 6.538 12 Si 0.943 3.057 13 H -0.249 1.249 14 H -0.248 1.248 15 H -0.248 1.248 16 S 0.151 5.849 17 Si 1.026 2.974 18 C -0.445 4.445 19 C -0.448 4.448 20 C -0.442 4.442 21 H 0.097 0.903 22 H 0.109 0.891 23 H 0.137 0.863 24 H 0.138 0.862 25 H 0.132 0.868 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.374 0.626 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 -2.644 -0.121 2.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.386 4.386 3 C -0.262 4.262 4 C -0.169 4.169 5 C -0.150 4.150 6 C -0.297 4.297 7 C -0.090 4.090 8 C -0.158 4.158 9 C -0.193 4.193 10 C -0.187 4.187 11 O -0.343 6.343 12 Si 0.763 3.237 13 H -0.172 1.172 14 H -0.171 1.171 15 H -0.171 1.171 16 S 0.422 5.578 17 Si 1.219 2.781 18 C -0.553 4.553 19 C -0.556 4.556 20 C -0.551 4.551 21 H 0.115 0.885 22 H 0.127 0.873 23 H 0.154 0.846 24 H 0.156 0.844 25 H 0.149 0.851 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.221 0.779 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.441 -3.474 -0.798 3.844 hybrid contribution -1.735 1.056 0.378 2.066 sum -0.294 -2.418 -0.419 2.471 Atomic orbital electron populations 1.24411 0.95239 1.02140 0.94568 1.27334 1.00609 1.06333 1.04322 1.23525 0.96808 0.96787 1.09059 1.20470 1.00772 0.90908 1.04702 1.20439 0.91093 1.00378 1.03072 1.23765 0.96797 0.97431 1.11710 1.20836 0.89772 0.97511 1.00837 1.22587 0.95467 0.98209 0.99492 1.21046 1.03905 0.94683 0.99709 1.25035 0.98969 1.03582 0.91080 1.86560 1.86384 1.36347 1.25043 0.85806 0.78257 0.79212 0.80435 1.17206 1.17083 1.17116 1.84438 1.02536 0.99924 1.70952 0.78679 0.66706 0.64369 0.68327 1.26058 1.05169 1.05839 1.18194 1.26203 1.16291 1.04610 1.08519 1.26053 1.09034 1.11890 1.08118 0.88490 0.87323 0.84554 0.84437 0.85053 0.90826 0.90939 0.89934 0.86737 0.77861 0.91023 0.91008 0.90839 0.90207 0.90488 0.90887 0.91020 0.90905 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.07 13.51 28.93 0.39 0.46 16 2 C -0.34 -0.06 4.69 -37.84 -0.18 -0.24 16 3 C -0.14 -0.25 6.25 -36.72 -0.23 -0.48 16 4 C -0.14 -0.27 9.63 -40.64 -0.39 -0.66 16 5 C -0.12 -0.23 10.13 -40.63 -0.41 -0.64 16 6 C -0.18 -0.35 5.68 -36.72 -0.21 -0.56 16 7 C -0.07 -0.07 9.66 -37.84 -0.37 -0.43 16 8 C -0.15 -0.05 4.65 -101.15 -0.47 -0.52 16 9 C -0.14 0.08 7.06 36.01 0.25 0.34 16 10 C -0.08 0.02 2.82 36.00 0.10 0.12 16 11 O -0.54 -0.30 12.88 -35.23 -0.45 -0.76 16 12 Si 0.94 -0.34 27.53 -169.99 -4.68 -5.02 16 13 H -0.25 -0.16 7.11 56.52 0.40 0.24 16 14 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 15 H -0.25 0.11 7.11 56.52 0.40 0.51 16 16 S 0.15 0.17 14.63 -107.50 -1.57 -1.41 16 17 Si 1.03 -1.90 11.89 -169.99 -2.02 -3.92 16 18 C -0.44 0.55 8.65 101.05 0.87 1.42 16 19 C -0.45 0.53 7.89 101.05 0.80 1.33 16 20 C -0.44 0.78 8.49 101.05 0.86 1.64 16 21 H 0.10 -0.07 6.58 -52.49 -0.35 -0.42 16 22 H 0.11 -0.26 7.27 -52.49 -0.38 -0.64 16 23 H 0.14 0.08 6.84 -52.49 -0.36 -0.28 16 24 H 0.14 0.06 8.06 -52.49 -0.42 -0.36 16 25 H 0.13 -0.04 7.89 -52.49 -0.41 -0.45 16 26 H 0.07 -0.07 7.06 -51.93 -0.37 -0.44 16 27 H 0.07 -0.17 6.87 -51.93 -0.36 -0.53 16 28 H 0.08 0.00 6.55 -51.93 -0.34 -0.34 16 29 H 0.11 -0.12 7.65 -51.93 -0.40 -0.52 16 30 H 0.37 -1.06 7.48 45.56 0.34 -0.72 16 31 H 0.07 -0.06 7.96 -51.92 -0.41 -0.47 16 32 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.08 -0.16 7.96 -51.93 -0.41 -0.58 16 35 H 0.08 -0.07 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.07 4.99 -36.50 -0.18 -0.25 16 37 H 0.07 -0.15 7.64 -51.93 -0.40 -0.55 16 38 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 39 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 LS Contribution 327.97 15.07 4.94 4.94 Total: 0.00 -4.53 327.97 -8.07 -12.60 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: -5.31 Total: -8.23 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 1.02 Total: 1.79 kcal Atomic # 8 Polarization: -0.30 SS G_CDS: -0.45 Total: -0.76 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: -6.70 Total: -8.94 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.57 Total: -1.41 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -4.53 -8.07 -12.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.621 kcal (2) G-P(sol) polarization free energy of solvation -4.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds