Wall clock time and date at job start Mon Mar 8 2021 10:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33059 * 1 3 3 C 1.46981 * 120.00050 * 2 1 4 4 C 1.36352 * 125.15101 * 359.71728 * 3 2 1 5 5 C 1.37202 * 114.71232 * 179.79191 * 4 3 2 6 6 C 1.36360 * 114.71115 * 0.50114 * 5 4 3 7 7 C 1.46978 * 125.15208 * 179.75441 * 6 5 4 8 8 C 1.33067 * 120.00279 * 151.37201 * 7 6 5 9 9 C 1.50700 * 119.99606 * 350.86477 * 8 7 6 10 10 C 1.50697 * 119.99792 * 170.86893 * 8 7 6 11 11 O 1.42902 * 109.46854 * 120.00129 * 10 8 7 12 12 Si 1.86302 * 109.46750 * 239.99353 * 10 8 7 13 13 H 1.48503 * 109.46926 * 60.00497 * 12 10 8 14 14 H 1.48499 * 109.47029 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47714 * 300.00408 * 12 10 8 16 16 S 1.75832 * 109.69651 * 359.72553 * 6 5 4 17 17 Si 1.86808 * 120.00011 * 179.97438 * 2 1 3 18 18 C 1.86294 * 109.47350 * 270.00344 * 17 2 1 19 19 C 1.86303 * 109.46823 * 150.00130 * 17 2 1 20 20 C 1.86297 * 109.46890 * 30.00419 * 17 2 1 21 21 H 1.07996 * 120.00175 * 0.02562 * 1 2 3 22 22 H 1.07997 * 119.99969 * 180.02562 * 1 2 3 23 23 H 1.07996 * 122.64693 * 359.97438 * 4 3 2 24 24 H 1.07997 * 122.64731 * 180.24848 * 5 4 3 25 25 H 1.08002 * 120.00031 * 331.36661 * 7 6 5 26 26 H 1.09004 * 109.47090 * 84.21045 * 9 8 7 27 27 H 1.08998 * 109.47168 * 204.20369 * 9 8 7 28 28 H 1.08991 * 109.47439 * 324.20870 * 9 8 7 29 29 H 1.08994 * 109.47779 * 359.97438 * 10 8 7 30 30 H 0.96698 * 114.00230 * 60.00074 * 11 10 8 31 31 H 1.09009 * 109.47130 * 300.00329 * 18 17 2 32 32 H 1.09001 * 109.46970 * 59.99604 * 18 17 2 33 33 H 1.08995 * 109.47190 * 180.02562 * 18 17 2 34 34 H 1.09002 * 109.46883 * 180.02562 * 19 17 2 35 35 H 1.09001 * 109.47119 * 300.00073 * 19 17 2 36 36 H 1.09000 * 109.46817 * 60.00461 * 19 17 2 37 37 H 1.09004 * 109.47356 * 299.99810 * 20 17 2 38 38 H 1.09001 * 109.47416 * 59.99704 * 20 17 2 39 39 H 1.09002 * 109.47047 * 179.97438 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3306 0.0000 0.0000 3 6 2.0655 1.2729 0.0000 4 6 1.4925 2.5102 -0.0055 5 6 2.3825 3.5544 0.0003 6 6 3.6950 3.1848 -0.0003 7 6 4.8353 4.1122 0.0000 8 6 5.9898 3.7470 0.5516 9 6 6.0721 2.4740 1.3540 10 6 7.2149 4.6064 0.3739 11 8 7.6860 5.0345 1.6533 12 14 8.5459 3.6213 -0.4800 13 1 8.0563 3.1763 -1.8095 14 1 9.7533 4.4679 -0.6545 15 1 8.8890 2.4344 0.3438 16 16 3.8167 1.4307 -0.0006 17 14 2.2646 -1.6178 0.0007 18 6 2.5751 -2.1549 1.7573 19 6 3.8925 -1.3953 -0.8776 20 6 1.2578 -2.9165 -0.8770 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 0.4226 2.6567 -0.0108 24 1 2.0682 4.5877 0.0008 25 1 4.7361 5.0901 -0.4476 26 1 6.2323 1.6307 0.6821 27 1 6.9022 2.5408 2.0573 28 1 5.1416 2.3297 1.9029 29 1 6.9633 5.4773 -0.2311 30 1 7.9292 4.3099 2.2456 31 1 3.1641 -1.3950 2.2710 32 1 1.6226 -2.2850 2.2712 33 1 3.1204 -3.0986 1.7577 34 1 4.4373 -2.3394 -0.8776 35 1 3.7108 -1.0811 -1.9054 36 1 4.4815 -0.6355 -0.3640 37 1 0.3053 -3.0466 -0.3632 38 1 1.0761 -2.6022 -1.9048 39 1 1.8030 -3.8603 -0.8770 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:46:56 Heat of formation + Delta-G solvation = -13.101938 kcal Electronic energy + Delta-G solvation = -17769.346520 eV Core-core repulsion = 15120.714812 eV Total energy + Delta-G solvation = -2648.631708 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.21137 -38.44747 -35.99785 -34.04594 -29.93658 -29.51807 -28.64007 -28.35285 -28.20661 -26.54133 -24.51638 -21.87536 -20.42642 -18.69797 -18.32742 -17.50325 -16.67946 -16.22130 -16.05632 -15.07129 -15.02805 -14.62756 -14.36957 -14.27908 -14.18152 -13.96077 -13.81442 -13.64181 -13.57430 -13.40069 -13.23994 -13.08813 -12.96771 -12.95166 -12.54081 -12.38484 -12.13139 -11.82424 -11.68026 -11.41682 -10.85349 -10.82931 -10.74855 -10.53329 -9.97089 -9.35696 -8.56122 -0.56756 0.52969 0.81570 1.04260 1.19160 1.43493 1.44420 1.61151 1.72405 1.87848 1.91941 2.03002 2.35134 2.58214 3.51935 3.64191 3.86198 4.00307 4.20229 4.46333 4.48458 4.51725 4.65625 4.69809 4.75447 4.77322 4.79695 4.81622 4.83465 4.85297 4.90674 4.97138 5.04579 5.21707 5.38348 5.41413 5.52065 5.56639 5.60840 5.64425 5.71925 5.76689 6.68925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.366 4.366 3 C -0.155 4.155 4 C -0.158 4.158 5 C -0.133 4.133 6 C -0.195 4.195 7 C -0.086 4.086 8 C -0.151 4.151 9 C -0.144 4.144 10 C -0.076 4.076 11 O -0.553 6.553 12 Si 0.974 3.026 13 H -0.265 1.265 14 H -0.266 1.266 15 H -0.242 1.242 16 S 0.162 5.838 17 Si 1.070 2.930 18 C -0.455 4.455 19 C -0.461 4.461 20 C -0.448 4.448 21 H 0.094 0.906 22 H 0.128 0.872 23 H 0.143 0.857 24 H 0.145 0.855 25 H 0.139 0.861 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.388 0.612 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 -3.474 0.101 3.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.407 4.407 3 C -0.272 4.272 4 C -0.187 4.187 5 C -0.163 4.163 6 C -0.311 4.311 7 C -0.106 4.106 8 C -0.154 4.154 9 C -0.201 4.201 10 C -0.185 4.185 11 O -0.361 6.361 12 Si 0.796 3.204 13 H -0.189 1.189 14 H -0.191 1.191 15 H -0.165 1.165 16 S 0.433 5.567 17 Si 1.261 2.739 18 C -0.562 4.562 19 C -0.569 4.569 20 C -0.557 4.557 21 H 0.112 0.888 22 H 0.146 0.854 23 H 0.161 0.839 24 H 0.163 0.837 25 H 0.157 0.843 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.138 0.862 30 H 0.237 0.763 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.550 -4.296 -0.559 4.601 hybrid contribution -1.765 1.318 0.317 2.226 sum -0.216 -2.977 -0.242 2.995 Atomic orbital electron populations 1.24662 0.95211 1.03011 0.93440 1.27816 1.01217 1.06686 1.05022 1.23852 0.97342 0.97422 1.08611 1.20653 1.01281 0.91213 1.05536 1.20619 0.91322 1.00897 1.03468 1.23997 0.97125 0.98147 1.11862 1.20985 0.89909 0.97948 1.01767 1.22749 0.95366 0.98446 0.98837 1.21146 1.04439 0.94408 1.00111 1.25067 0.98669 1.03809 0.90981 1.86529 1.86423 1.37620 1.25510 0.85361 0.76963 0.78679 0.79427 1.18905 1.19081 1.16499 1.84317 1.02273 0.99431 1.70720 0.78014 0.65595 0.62911 0.67390 1.26178 1.05228 1.06063 1.18780 1.26352 1.17150 1.04960 1.08442 1.26102 1.09420 1.12069 1.08092 0.88796 0.85377 0.83921 0.83728 0.84342 0.90425 0.88923 0.90620 0.86245 0.76265 0.91577 0.90960 0.90218 0.89248 0.90813 0.91290 0.90462 0.91018 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.14 13.51 66.66 0.90 1.04 16 2 C -0.37 -0.23 4.69 23.40 0.11 -0.12 16 3 C -0.15 -0.67 6.25 24.12 0.15 -0.51 16 4 C -0.16 -0.80 9.63 21.59 0.21 -0.59 16 5 C -0.13 -0.68 10.13 21.59 0.22 -0.46 16 6 C -0.19 -0.95 5.68 24.12 0.14 -0.81 16 7 C -0.09 -0.23 9.66 23.40 0.23 -0.01 16 8 C -0.15 -0.11 4.65 -17.61 -0.08 -0.20 16 9 C -0.14 0.19 7.06 71.24 0.50 0.69 16 10 C -0.08 0.05 2.82 71.24 0.20 0.25 16 11 O -0.55 -0.39 12.88 -148.98 -1.92 -2.31 16 12 Si 0.97 -0.75 27.53 68.60 1.89 1.14 16 13 H -0.26 -0.47 7.11 99.48 0.71 0.24 16 14 H -0.27 -0.61 7.11 99.48 0.71 0.10 16 15 H -0.24 0.45 7.11 99.48 0.71 1.15 16 16 S 0.16 0.48 14.63 -56.49 -0.83 -0.34 16 17 Si 1.07 -4.26 11.89 68.60 0.82 -3.44 16 18 C -0.46 1.26 8.65 113.37 0.98 2.24 16 19 C -0.46 1.12 7.89 113.37 0.89 2.02 16 20 C -0.45 1.98 8.49 113.37 0.96 2.95 16 21 H 0.09 -0.09 6.58 -2.91 -0.02 -0.11 16 22 H 0.13 -0.72 7.27 -2.91 -0.02 -0.74 16 23 H 0.14 0.35 6.84 -2.91 -0.02 0.33 16 24 H 0.15 0.34 8.06 -2.91 -0.02 0.31 16 25 H 0.14 0.04 7.89 -2.91 -0.02 0.02 16 26 H 0.08 -0.16 7.06 -2.38 -0.02 -0.18 16 27 H 0.09 -0.53 6.87 -2.39 -0.02 -0.55 16 28 H 0.08 0.03 6.55 -2.39 -0.02 0.01 16 29 H 0.12 -0.24 7.65 -2.39 -0.02 -0.26 16 30 H 0.39 -2.49 7.48 -74.06 -0.55 -3.05 16 31 H 0.07 -0.10 7.96 -2.38 -0.02 -0.12 16 32 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 33 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 34 H 0.09 -0.41 7.96 -2.39 -0.02 -0.42 16 35 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 36 H 0.07 -0.11 4.99 -12.19 -0.06 -0.17 16 37 H 0.08 -0.42 7.64 -2.39 -0.02 -0.43 16 38 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 39 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 Total: 0.00 -10.31 327.97 6.55 -3.76 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: 1.18 Total: -5.29 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.41 Total: 6.49 kcal Atomic # 8 Polarization: -0.39 SS G_CDS: -1.92 Total: -2.31 kcal Atomic # 14 Polarization: -5.01 SS G_CDS: 2.70 Total: -2.30 kcal Atomic # 16 Polarization: 0.48 SS G_CDS: -0.83 Total: -0.34 kcal Total: -10.31 6.55 -3.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.341 kcal (2) G-P(sol) polarization free energy of solvation -10.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds