Wall clock time and date at job start Mon Mar 8 2021 10:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32597 * 1 3 3 C 1.47771 * 120.00311 * 2 1 4 4 C 1.39567 * 120.08123 * 48.36014 * 3 2 1 5 5 C 1.37876 * 119.90768 * 180.23581 * 4 3 2 6 6 C 1.50700 * 119.95168 * 179.79579 * 5 4 3 7 7 O 1.42896 * 109.47534 * 105.01327 * 6 5 4 8 8 Si 1.86302 * 109.47284 * 345.01102 * 6 5 4 9 9 H 1.48501 * 109.46953 * 180.02562 * 8 6 5 10 10 H 1.48491 * 109.47081 * 60.00129 * 8 6 5 11 11 H 1.48506 * 109.47017 * 300.00272 * 8 6 5 12 12 C 1.38834 * 120.08876 * 359.51275 * 5 4 3 13 13 O 1.35870 * 119.91274 * 180.25081 * 12 5 4 14 14 C 1.42896 * 117.00322 * 269.26756 * 13 12 5 15 15 F 1.39898 * 109.47036 * 305.82175 * 14 13 12 16 16 F 1.39898 * 109.47246 * 65.82704 * 14 13 12 17 17 C 1.38878 * 120.17420 * 0.28377 * 12 5 4 18 18 C 1.50696 * 119.95815 * 179.97438 * 17 12 5 19 19 C 1.37833 * 120.08463 * 359.95074 * 17 12 5 20 20 Si 1.86801 * 119.99946 * 180.02562 * 2 1 3 21 21 C 1.86302 * 109.47164 * 185.46698 * 20 2 1 22 22 C 1.86300 * 109.47148 * 305.46892 * 20 2 1 23 23 C 1.86300 * 109.47299 * 65.47077 * 20 2 1 24 24 H 1.07999 * 119.99875 * 179.97438 * 1 2 3 25 25 H 1.07993 * 119.99959 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.04376 * 0.02562 * 4 3 2 27 27 H 1.09009 * 109.47009 * 225.01588 * 6 5 4 28 28 H 0.96699 * 113.99944 * 299.99818 * 7 6 5 29 29 H 1.09005 * 109.46621 * 185.83005 * 14 13 12 30 30 H 1.09004 * 109.47077 * 89.99740 * 18 17 12 31 31 H 1.08996 * 109.47533 * 209.99597 * 18 17 12 32 32 H 1.08993 * 109.47306 * 330.00093 * 18 17 12 33 33 H 1.08003 * 120.04634 * 180.02562 * 19 17 12 34 34 H 1.09002 * 109.46593 * 57.81444 * 21 20 2 35 35 H 1.08998 * 109.47035 * 177.81297 * 21 20 2 36 36 H 1.08999 * 109.47145 * 297.81829 * 21 20 2 37 37 H 1.09004 * 109.47165 * 60.00168 * 22 20 2 38 38 H 1.08996 * 109.47063 * 180.02562 * 22 20 2 39 39 H 1.09001 * 109.47102 * 299.99783 * 22 20 2 40 40 H 1.09000 * 109.47229 * 59.99813 * 23 20 2 41 41 H 1.08998 * 109.47047 * 180.02562 * 23 20 2 42 42 H 1.09004 * 109.46998 * 299.99822 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2797 0.0000 4 6 1.7198 2.2868 0.9026 5 6 2.4084 3.4812 0.8962 6 6 2.0336 4.5710 1.8672 7 8 3.0096 4.6375 2.9088 8 14 0.3635 4.1988 2.6040 9 1 -0.0061 5.2731 3.5604 10 1 0.4159 2.8973 3.3169 11 1 -0.6509 4.1299 1.5216 12 6 3.4505 3.6791 0.0004 13 8 4.1300 4.8556 0.0006 14 6 3.6433 5.8862 -0.8613 15 9 3.5442 5.3939 -2.1670 16 9 2.3819 6.3034 -0.4232 17 6 3.7997 2.6778 -0.8964 18 6 4.9312 2.8980 -1.8670 19 6 3.1129 1.4827 -0.8995 20 14 2.2600 -1.6178 -0.0007 21 6 4.0847 -1.2814 0.1668 22 6 1.6878 -2.6658 1.4293 23 6 1.9390 -2.5195 -1.5990 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 0.9122 2.1319 1.6027 27 1 1.9950 5.5265 1.3439 28 1 3.0980 3.8200 3.4177 29 1 4.3322 6.7308 -0.8427 30 1 5.8668 2.5680 -1.4153 31 1 4.7459 2.3270 -2.7768 32 1 4.9996 3.9581 -2.1109 33 1 3.3853 0.7043 -1.5969 34 1 4.2680 -0.7199 1.0829 35 1 4.6263 -2.2265 0.2054 36 1 4.4273 -0.7010 -0.6899 37 1 0.6202 -2.8626 1.3313 38 1 2.2331 -3.6095 1.4291 39 1 1.8757 -2.1382 2.3645 40 1 2.2737 -1.9063 -2.4357 41 1 2.4836 -3.4636 -1.5992 42 1 0.8713 -2.7163 -1.6971 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:49:17 Heat of formation + Delta-G solvation = -182.160190 kcal Electronic energy + Delta-G solvation = -25754.535533 eV Core-core repulsion = 21880.056660 eV Total energy + Delta-G solvation = -3874.478873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.122 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.15150 -48.27732 -41.35870 -38.63438 -37.74110 -34.94299 -33.68851 -30.76602 -29.61957 -28.48713 -28.37854 -28.28248 -26.96607 -26.36678 -23.67815 -22.08364 -20.33719 -20.02916 -19.18734 -18.80649 -17.98040 -17.28132 -16.96034 -16.49019 -15.94825 -15.74952 -15.34990 -14.95431 -14.81685 -14.69917 -14.59267 -14.49867 -14.23672 -14.16118 -14.04777 -13.93085 -13.76209 -13.51245 -13.38165 -13.30139 -13.20609 -13.18839 -13.07092 -12.77446 -12.58766 -12.37943 -12.13631 -11.73689 -11.71483 -11.35267 -10.93728 -10.91984 -10.46760 -10.32216 -9.77932 -9.23669 -0.20053 0.21228 0.98989 1.13287 1.39196 1.50453 1.60785 1.80263 1.89774 1.90820 2.10211 2.48290 2.60548 2.72639 3.45441 3.52347 3.64415 3.65417 3.75716 3.80217 4.16689 4.27007 4.32709 4.53405 4.56518 4.64029 4.65105 4.69241 4.69665 4.70820 4.71606 4.74926 4.77187 4.86015 5.00339 5.17302 5.28393 5.33775 5.39338 5.43752 5.48148 5.51184 5.53780 5.71214 6.14580 6.59715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.377 4.377 3 C -0.013 4.013 4 C -0.127 4.127 5 C -0.109 4.109 6 C -0.089 4.089 7 O -0.528 6.528 8 Si 0.941 3.059 9 H -0.249 1.249 10 H -0.249 1.249 11 H -0.248 1.248 12 C 0.080 3.920 13 O -0.318 6.318 14 C 0.404 3.596 15 F -0.201 7.201 16 F -0.202 7.202 17 C -0.073 4.073 18 C -0.123 4.123 19 C -0.106 4.106 20 Si 1.049 2.951 21 C -0.447 4.447 22 C -0.448 4.448 23 C -0.448 4.448 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.373 0.627 29 H 0.177 0.823 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 -2.301 -0.829 2.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.418 4.418 3 C -0.013 4.013 4 C -0.145 4.145 5 C -0.110 4.110 6 C -0.199 4.199 7 O -0.333 6.333 8 Si 0.764 3.236 9 H -0.173 1.173 10 H -0.173 1.173 11 H -0.171 1.171 12 C 0.038 3.962 13 O -0.237 6.237 14 C 0.315 3.685 15 F -0.183 7.183 16 F -0.184 7.184 17 C -0.073 4.073 18 C -0.179 4.179 19 C -0.123 4.123 20 Si 1.240 2.760 21 C -0.555 4.555 22 C -0.556 4.556 23 C -0.555 4.555 24 H 0.125 0.875 25 H 0.113 0.887 26 H 0.147 0.853 27 H 0.144 0.856 28 H 0.220 0.780 29 H 0.193 0.807 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.153 0.847 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.360 -1.748 -0.627 1.892 hybrid contribution -0.036 -0.306 -0.182 0.358 sum -0.396 -2.055 -0.809 2.244 Atomic orbital electron populations 1.24313 0.95467 1.02083 0.94097 1.28064 1.01096 1.08003 1.04657 1.18958 0.94824 0.93126 0.94357 1.21156 1.00376 0.92478 1.00487 1.20487 0.95494 0.96512 0.98478 1.25218 1.02920 1.01468 0.90326 1.86567 1.60380 1.39978 1.46360 0.85823 0.75835 0.80838 0.81138 1.17287 1.17280 1.17112 1.18160 0.94707 0.85839 0.97526 1.86703 1.52703 1.21538 1.62756 1.23668 0.81995 0.89660 0.73182 1.93054 1.96402 1.89076 1.39728 1.92986 1.46343 1.90256 1.88785 1.20125 0.97633 0.93695 0.95851 1.20929 0.95754 1.03908 0.97305 1.21079 0.95228 0.96644 0.99399 0.78365 0.66489 0.63330 0.67773 1.26202 1.19319 1.05012 1.05007 1.26116 1.06002 1.09469 1.13970 1.26122 1.05074 1.08185 1.16143 0.87463 0.88717 0.85311 0.85613 0.78037 0.80702 0.90467 0.91034 0.90484 0.84662 0.91041 0.91053 0.90952 0.91191 0.90865 0.91046 0.91070 0.90896 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 13.34 28.83 0.38 0.51 16 2 C -0.38 0.23 4.39 -37.59 -0.17 0.07 16 3 C -0.01 -0.01 5.20 -105.00 -0.55 -0.56 16 4 C -0.13 -0.21 7.97 -39.22 -0.31 -0.52 16 5 C -0.11 -0.26 5.19 -104.53 -0.54 -0.80 16 6 C -0.09 -0.16 2.33 36.01 0.08 -0.08 16 7 O -0.53 -1.06 12.88 -35.23 -0.45 -1.51 16 8 Si 0.94 0.92 25.49 -169.99 -4.33 -3.41 16 9 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 10 H -0.25 -0.09 6.73 56.52 0.38 0.29 16 11 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 12 C 0.08 0.23 5.29 -39.12 -0.21 0.02 16 13 O -0.32 -0.72 8.98 -19.33 -0.17 -0.89 16 14 C 0.40 0.08 6.24 101.05 0.63 0.71 16 15 F -0.20 -0.29 14.46 2.25 0.03 -0.25 16 16 F -0.20 -0.35 14.50 2.25 0.03 -0.32 16 17 C -0.07 -0.13 5.66 -104.54 -0.59 -0.72 16 18 C -0.12 -0.03 9.57 36.00 0.34 0.32 16 19 C -0.11 -0.09 7.76 -39.22 -0.30 -0.39 16 20 Si 1.05 -2.64 11.60 -169.99 -1.97 -4.61 16 21 C -0.45 0.68 8.02 101.05 0.81 1.49 16 22 C -0.45 0.80 8.65 101.05 0.87 1.67 16 23 C -0.45 0.88 8.65 101.05 0.87 1.76 16 24 H 0.11 -0.31 7.73 -52.49 -0.41 -0.72 16 25 H 0.09 -0.06 7.89 -52.49 -0.41 -0.48 16 26 H 0.13 0.07 4.80 -52.49 -0.25 -0.18 16 27 H 0.13 0.28 4.93 -51.92 -0.26 0.02 16 28 H 0.37 -0.51 8.70 45.56 0.40 -0.11 16 29 H 0.18 -0.72 8.14 -51.93 -0.42 -1.15 16 30 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.07 -0.06 8.08 -51.93 -0.42 -0.48 16 32 H 0.08 0.04 5.18 -51.93 -0.27 -0.23 16 33 H 0.14 -0.16 6.32 -52.48 -0.33 -0.50 16 34 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.12 6.16 -51.93 -0.32 -0.44 16 37 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 41 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 42 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 LS Contribution 346.90 15.07 5.23 5.23 Total: 0.00 -5.55 346.90 -5.55 -11.10 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: -5.24 Total: -8.80 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 1.33 Total: 3.47 kcal Atomic # 8 Polarization: -1.78 SS G_CDS: -0.63 Total: -2.40 kcal Atomic # 9 Polarization: -0.64 SS G_CDS: 0.07 Total: -0.57 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: -6.30 Total: -8.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -5.55 -5.55 -11.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.061 kcal (2) G-P(sol) polarization free energy of solvation -5.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds