Wall clock time and date at job start Mon Mar 8 2021 10:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32597 * 1 3 3 C 1.47771 * 120.00311 * 2 1 4 4 C 1.39567 * 120.08123 * 48.36014 * 3 2 1 5 5 C 1.37876 * 119.90768 * 180.23581 * 4 3 2 6 6 C 1.50700 * 119.95168 * 179.79579 * 5 4 3 7 7 O 1.42896 * 109.47534 * 105.01327 * 6 5 4 8 8 Si 1.86302 * 109.47284 * 345.01102 * 6 5 4 9 9 H 1.48501 * 109.46953 * 180.02562 * 8 6 5 10 10 H 1.48491 * 109.47081 * 60.00129 * 8 6 5 11 11 H 1.48506 * 109.47017 * 300.00272 * 8 6 5 12 12 C 1.38834 * 120.08876 * 359.51275 * 5 4 3 13 13 O 1.35870 * 119.91274 * 180.25081 * 12 5 4 14 14 C 1.42896 * 117.00322 * 269.26756 * 13 12 5 15 15 F 1.39898 * 109.47036 * 305.82175 * 14 13 12 16 16 F 1.39898 * 109.47246 * 65.82704 * 14 13 12 17 17 C 1.38878 * 120.17420 * 0.28377 * 12 5 4 18 18 C 1.50696 * 119.95815 * 179.97438 * 17 12 5 19 19 C 1.37833 * 120.08463 * 359.95074 * 17 12 5 20 20 Si 1.86801 * 119.99946 * 180.02562 * 2 1 3 21 21 C 1.86302 * 109.47164 * 185.46698 * 20 2 1 22 22 C 1.86300 * 109.47148 * 305.46892 * 20 2 1 23 23 C 1.86300 * 109.47299 * 65.47077 * 20 2 1 24 24 H 1.07999 * 119.99875 * 179.97438 * 1 2 3 25 25 H 1.07993 * 119.99959 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.04376 * 0.02562 * 4 3 2 27 27 H 1.09009 * 109.47009 * 225.01588 * 6 5 4 28 28 H 0.96699 * 113.99944 * 299.99818 * 7 6 5 29 29 H 1.09005 * 109.46621 * 185.83005 * 14 13 12 30 30 H 1.09004 * 109.47077 * 89.99740 * 18 17 12 31 31 H 1.08996 * 109.47533 * 209.99597 * 18 17 12 32 32 H 1.08993 * 109.47306 * 330.00093 * 18 17 12 33 33 H 1.08003 * 120.04634 * 180.02562 * 19 17 12 34 34 H 1.09002 * 109.46593 * 57.81444 * 21 20 2 35 35 H 1.08998 * 109.47035 * 177.81297 * 21 20 2 36 36 H 1.08999 * 109.47145 * 297.81829 * 21 20 2 37 37 H 1.09004 * 109.47165 * 60.00168 * 22 20 2 38 38 H 1.08996 * 109.47063 * 180.02562 * 22 20 2 39 39 H 1.09001 * 109.47102 * 299.99783 * 22 20 2 40 40 H 1.09000 * 109.47229 * 59.99813 * 23 20 2 41 41 H 1.08998 * 109.47047 * 180.02562 * 23 20 2 42 42 H 1.09004 * 109.46998 * 299.99822 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2797 0.0000 4 6 1.7198 2.2868 0.9026 5 6 2.4084 3.4812 0.8962 6 6 2.0336 4.5710 1.8672 7 8 3.0096 4.6375 2.9088 8 14 0.3635 4.1988 2.6040 9 1 -0.0061 5.2731 3.5604 10 1 0.4159 2.8973 3.3169 11 1 -0.6509 4.1299 1.5216 12 6 3.4505 3.6791 0.0004 13 8 4.1300 4.8556 0.0006 14 6 3.6433 5.8862 -0.8613 15 9 3.5442 5.3939 -2.1670 16 9 2.3819 6.3034 -0.4232 17 6 3.7997 2.6778 -0.8964 18 6 4.9312 2.8980 -1.8670 19 6 3.1129 1.4827 -0.8995 20 14 2.2600 -1.6178 -0.0007 21 6 4.0847 -1.2814 0.1668 22 6 1.6878 -2.6658 1.4293 23 6 1.9390 -2.5195 -1.5990 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 0.9122 2.1319 1.6027 27 1 1.9950 5.5265 1.3439 28 1 3.0980 3.8200 3.4177 29 1 4.3322 6.7308 -0.8427 30 1 5.8668 2.5680 -1.4153 31 1 4.7459 2.3270 -2.7768 32 1 4.9996 3.9581 -2.1109 33 1 3.3853 0.7043 -1.5969 34 1 4.2680 -0.7199 1.0829 35 1 4.6263 -2.2265 0.2054 36 1 4.4273 -0.7010 -0.6899 37 1 0.6202 -2.8626 1.3313 38 1 2.2331 -3.6095 1.4291 39 1 1.8757 -2.1382 2.3645 40 1 2.2737 -1.9063 -2.4357 41 1 2.4836 -3.4636 -1.5992 42 1 0.8713 -2.7163 -1.6971 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:49:16 Heat of formation + Delta-G solvation = -174.509898 kcal Electronic energy + Delta-G solvation = -25754.203792 eV Core-core repulsion = 21880.056660 eV Total energy + Delta-G solvation = -3874.147131 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.122 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.20252 -48.34058 -41.41972 -38.68896 -37.84510 -34.92196 -33.74381 -30.75090 -29.45133 -28.35102 -28.27324 -28.22555 -27.02065 -26.39500 -23.68899 -22.15823 -20.33472 -20.07423 -19.19878 -18.86313 -18.05597 -17.32558 -17.01295 -16.54451 -16.02532 -15.81082 -15.36383 -15.00497 -14.88007 -14.73561 -14.63014 -14.56340 -14.13220 -14.06621 -14.04369 -13.78407 -13.67402 -13.50509 -13.20806 -13.16769 -13.15674 -13.10092 -12.94264 -12.78741 -12.63112 -12.41433 -12.26010 -11.80121 -11.79299 -11.25336 -10.83958 -10.77107 -10.46194 -10.33267 -9.84780 -9.27066 -0.24732 0.13206 1.02941 1.07646 1.30070 1.39682 1.74736 1.78068 1.97688 1.99907 2.23890 2.58831 2.61425 2.72629 3.39638 3.59596 3.62561 3.65014 3.75373 3.77775 4.14272 4.24058 4.28023 4.46972 4.54216 4.72970 4.76646 4.80111 4.83930 4.84862 4.87655 4.88322 4.89189 4.92797 5.00257 5.16100 5.24900 5.32192 5.40272 5.49201 5.59223 5.66987 5.68593 5.77859 6.08152 6.62790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.393 4.393 3 C -0.017 4.017 4 C -0.139 4.139 5 C -0.120 4.120 6 C -0.091 4.091 7 O -0.542 6.542 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.237 1.237 11 H -0.258 1.258 12 C 0.059 3.941 13 O -0.328 6.328 14 C 0.396 3.604 15 F -0.209 7.209 16 F -0.213 7.213 17 C -0.084 4.084 18 C -0.122 4.122 19 C -0.110 4.110 20 Si 1.108 2.892 21 C -0.462 4.462 22 C -0.460 4.460 23 C -0.457 4.457 24 H 0.128 0.872 25 H 0.087 0.913 26 H 0.136 0.864 27 H 0.118 0.882 28 H 0.386 0.614 29 H 0.219 0.781 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 -3.235 -1.128 3.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.432 4.432 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.121 4.121 6 C -0.201 4.201 7 O -0.349 6.349 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.160 1.160 11 H -0.182 1.182 12 C 0.017 3.983 13 O -0.248 6.248 14 C 0.308 3.692 15 F -0.191 7.191 16 F -0.195 7.195 17 C -0.084 4.084 18 C -0.178 4.178 19 C -0.128 4.128 20 Si 1.296 2.704 21 C -0.569 4.569 22 C -0.567 4.567 23 C -0.564 4.564 24 H 0.146 0.854 25 H 0.105 0.895 26 H 0.153 0.847 27 H 0.135 0.865 28 H 0.234 0.766 29 H 0.235 0.765 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.172 0.828 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.343 -2.684 -0.919 2.858 hybrid contribution -0.037 0.000 -0.095 0.102 sum -0.380 -2.684 -1.014 2.894 Atomic orbital electron populations 1.24525 0.95493 1.02797 0.93415 1.28457 1.01473 1.08110 1.05133 1.19224 0.94893 0.93638 0.93971 1.21320 1.00677 0.92598 1.01086 1.20601 0.95829 0.96913 0.98733 1.25275 1.03420 1.01085 0.90350 1.86519 1.60612 1.41164 1.46603 0.85429 0.74600 0.80655 0.80122 1.18986 1.16036 1.18227 1.18416 0.95263 0.86427 0.98222 1.86672 1.52970 1.21773 1.63355 1.24390 0.82222 0.90195 0.72401 1.93030 1.96449 1.89324 1.40335 1.92960 1.47396 1.90279 1.88901 1.20374 0.98158 0.93854 0.96025 1.20957 0.95489 1.03894 0.97488 1.21341 0.94999 0.96828 0.99620 0.77465 0.64669 0.61487 0.66783 1.26377 1.20770 1.05105 1.04601 1.26256 1.06455 1.09802 1.14209 1.26223 1.05334 1.08444 1.16438 0.85390 0.89494 0.84668 0.86450 0.76558 0.76524 0.89973 0.89890 0.90878 0.82814 0.91936 0.90687 0.90840 0.90753 0.90639 0.91496 0.91073 0.90625 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.32 13.34 66.66 0.89 1.21 16 2 C -0.39 0.63 4.39 23.64 0.10 0.73 16 3 C -0.02 -0.04 5.20 -20.11 -0.10 -0.15 16 4 C -0.14 -0.57 7.97 22.50 0.18 -0.39 16 5 C -0.12 -0.71 5.19 -19.81 -0.10 -0.81 16 6 C -0.09 -0.44 2.33 71.24 0.17 -0.28 16 7 O -0.54 -2.71 12.88 -148.98 -1.92 -4.63 16 8 Si 0.97 2.63 25.49 68.60 1.75 4.38 16 9 H -0.27 -1.35 7.11 99.48 0.71 -0.64 16 10 H -0.24 -0.13 6.73 99.48 0.67 0.54 16 11 H -0.26 -1.08 7.11 99.48 0.71 -0.37 16 12 C 0.06 0.40 5.29 22.57 0.12 0.52 16 13 O -0.33 -1.79 8.98 -92.09 -0.83 -2.62 16 14 C 0.40 0.36 6.24 113.37 0.71 1.07 16 15 F -0.21 -0.74 14.46 44.97 0.65 -0.09 16 16 F -0.21 -0.98 14.50 44.97 0.65 -0.33 16 17 C -0.08 -0.35 5.66 -19.81 -0.11 -0.46 16 18 C -0.12 -0.09 9.57 71.23 0.68 0.60 16 19 C -0.11 -0.21 7.76 22.50 0.17 -0.04 16 20 Si 1.11 -6.38 11.60 68.60 0.80 -5.58 16 21 C -0.46 1.53 8.02 113.37 0.91 2.44 16 22 C -0.46 1.98 8.65 113.37 0.98 2.96 16 23 C -0.46 2.30 8.65 113.37 0.98 3.28 16 24 H 0.13 -0.91 7.73 -2.91 -0.02 -0.93 16 25 H 0.09 -0.10 7.89 -2.91 -0.02 -0.12 16 26 H 0.14 0.23 4.80 -2.91 -0.01 0.21 16 27 H 0.12 0.71 4.93 -2.38 -0.01 0.70 16 28 H 0.39 -0.71 8.70 -74.06 -0.64 -1.36 16 29 H 0.22 -1.89 8.14 -2.38 -0.02 -1.91 16 30 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.08 -0.17 8.08 -2.39 -0.02 -0.19 16 32 H 0.07 0.11 5.18 -2.39 -0.01 0.10 16 33 H 0.15 -0.44 6.32 -2.91 -0.02 -0.46 16 34 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 35 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 36 H 0.07 -0.27 6.16 -2.39 -0.01 -0.28 16 37 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 38 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 39 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 40 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 41 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 42 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 Total: 0.00 -13.33 346.90 7.79 -5.54 By element: Atomic # 1 Polarization: -8.47 SS G_CDS: 1.11 Total: -7.36 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.57 Total: 10.68 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -2.75 Total: -7.25 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 1.30 Total: -0.41 kcal Atomic # 14 Polarization: -3.74 SS G_CDS: 2.54 Total: -1.20 kcal Total: -13.33 7.79 -5.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.966 kcal (2) G-P(sol) polarization free energy of solvation -13.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds