Wall clock time and date at job start Mon Mar 8 2021 10:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32905 * 1 3 3 C 1.47178 * 119.99434 * 2 1 4 4 N 1.30405 * 125.48305 * 0.02562 * 3 2 1 5 5 C 1.31234 * 117.01991 * 180.02562 * 4 3 2 6 6 C 1.50695 * 122.07276 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47035 * 329.99282 * 6 5 4 8 8 Si 1.86300 * 109.47139 * 209.99813 * 6 5 4 9 9 H 1.48494 * 109.47215 * 59.99738 * 8 6 5 10 10 H 1.48497 * 109.47184 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47165 * 299.99564 * 8 6 5 12 12 C 1.33785 * 115.85897 * 359.97438 * 5 4 3 13 13 S 1.76179 * 125.47625 * 180.02562 * 3 2 1 14 14 Si 1.86801 * 120.00456 * 179.97438 * 2 1 3 15 15 C 1.86298 * 109.47333 * 270.00021 * 14 2 1 16 16 C 1.86299 * 109.47020 * 30.00618 * 14 2 1 17 17 C 1.86305 * 109.46810 * 149.99962 * 14 2 1 18 18 H 1.08001 * 119.99354 * 180.02562 * 1 2 3 19 19 H 1.07996 * 120.00371 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47316 * 89.99702 * 6 5 4 21 21 H 0.96702 * 114.00216 * 300.00783 * 7 6 5 22 22 H 1.08005 * 125.88028 * 180.02562 * 12 5 4 23 23 H 1.09005 * 109.46787 * 59.99761 * 15 14 2 24 24 H 1.08999 * 109.46999 * 179.97438 * 15 14 2 25 25 H 1.08998 * 109.46821 * 300.00354 * 15 14 2 26 26 H 1.08993 * 109.47547 * 59.99307 * 16 14 2 27 27 H 1.08999 * 109.47191 * 180.02562 * 16 14 2 28 28 H 1.09005 * 109.46658 * 299.99969 * 16 14 2 29 29 H 1.09003 * 109.47215 * 60.00722 * 17 14 2 30 30 H 1.09003 * 109.46861 * 179.97438 * 17 14 2 31 31 H 1.08992 * 109.47552 * 300.00324 * 17 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3290 0.0000 0.0000 3 6 2.0648 1.2747 0.0000 4 7 1.5236 2.4611 0.0005 5 6 2.3398 3.4887 -0.0001 6 6 1.8375 4.9095 0.0009 7 8 0.5780 4.9699 -0.6714 8 14 3.0637 6.0023 -0.8783 9 1 3.2271 5.5361 -2.2787 10 1 2.5684 7.4023 -0.8779 11 1 4.3726 5.9396 -0.1797 12 6 3.6454 3.1969 -0.0006 13 16 3.8185 1.4430 -0.0006 14 14 2.2632 -1.6177 0.0007 15 6 2.5737 -2.1547 1.7574 16 6 1.2565 -2.9164 -0.8771 17 6 3.8910 -1.3951 -0.8777 18 1 -0.5399 -0.9354 0.0004 19 1 -0.5400 0.9352 -0.0004 20 1 1.7175 5.2518 1.0287 21 1 0.6097 4.6791 -1.5931 22 1 4.4540 3.9129 -0.0008 23 1 1.6213 -2.2849 2.2713 24 1 3.1184 -3.0989 1.7577 25 1 3.1627 -1.3948 2.2708 26 1 1.0748 -2.6022 -1.9048 27 1 1.8014 -3.8605 -0.8763 28 1 0.3040 -3.0466 -0.3632 29 1 4.4801 -0.6352 -0.3641 30 1 4.4363 -2.3389 -0.8768 31 1 3.7094 -1.0808 -1.9054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12888840.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:54:33 Heat of formation + Delta-G solvation = -14.542580 kcal Electronic energy + Delta-G solvation = -13503.140994 eV Core-core repulsion = 11228.322283 eV Total energy + Delta-G solvation = -2274.818711 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 243.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79722 -37.44558 -34.81919 -31.15857 -29.68583 -28.69700 -28.51034 -27.38278 -25.67869 -21.75187 -19.89338 -19.08017 -17.33780 -16.80530 -16.43434 -15.79952 -15.68566 -14.87199 -14.57197 -14.50832 -14.21163 -14.03021 -13.81997 -13.63194 -13.43526 -13.26394 -13.10382 -12.95025 -12.25521 -12.12530 -11.80991 -11.56384 -11.19162 -11.02689 -10.85217 -10.57043 -10.49883 -10.15631 -9.22179 -0.54650 0.41195 0.75673 0.88208 1.13334 1.37745 1.45633 1.50454 1.66730 1.77608 1.89559 2.27678 2.39215 3.13967 3.56961 3.89412 4.16888 4.40888 4.51827 4.60175 4.60758 4.61730 4.65360 4.68690 4.69314 4.72656 5.10458 5.28608 5.36192 5.45358 5.46950 5.51115 6.54189 6.86587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.365 4.365 3 C 0.132 3.868 4 N -0.453 5.453 5 C 0.042 3.958 6 C -0.049 4.049 7 O -0.527 6.527 8 Si 0.959 3.041 9 H -0.249 1.249 10 H -0.246 1.246 11 H -0.250 1.250 12 C -0.283 4.283 13 S 0.093 5.907 14 Si 1.036 2.964 15 C -0.446 4.446 16 C -0.442 4.442 17 C -0.449 4.449 18 H 0.115 0.885 19 H 0.111 0.889 20 H 0.122 0.878 21 H 0.376 0.624 22 H 0.179 0.821 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 -2.763 -0.749 3.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.409 4.409 3 C -0.142 4.142 4 N -0.168 5.168 5 C -0.091 4.091 6 C -0.162 4.162 7 O -0.331 6.331 8 Si 0.780 3.220 9 H -0.172 1.172 10 H -0.169 1.169 11 H -0.174 1.174 12 C -0.421 4.421 13 S 0.351 5.649 14 Si 1.229 2.771 15 C -0.554 4.554 16 C -0.551 4.551 17 C -0.558 4.558 18 H 0.133 0.867 19 H 0.129 0.871 20 H 0.139 0.861 21 H 0.223 0.777 22 H 0.196 0.804 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.257 -2.519 -0.587 3.433 hybrid contribution -0.348 0.573 -0.154 0.688 sum 1.908 -1.946 -0.740 2.825 Atomic orbital electron populations 1.24643 0.95234 1.03106 0.88478 1.27620 1.01151 1.03861 1.08304 1.26146 0.91956 0.95208 1.00926 1.66456 1.37047 0.97068 1.16187 1.20711 0.88764 0.96852 1.02798 1.24879 0.93981 0.93707 1.03659 1.86487 1.29062 1.88587 1.28987 0.85642 0.76934 0.79382 0.80090 1.17233 1.16869 1.17414 1.27126 1.00736 1.00449 1.13829 1.85252 1.09623 1.00571 1.69412 0.78548 0.66459 0.63719 0.68410 1.26075 1.05280 1.05939 1.18126 1.26043 1.09061 1.11834 1.08143 1.26211 1.16283 1.04802 1.08472 0.86731 0.87050 0.86053 0.77746 0.80420 0.90898 0.90683 0.91044 0.90787 0.90536 0.90890 0.90856 0.89998 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.03 13.62 28.89 0.39 0.42 16 2 C -0.36 -0.04 4.69 -37.80 -0.18 -0.22 16 3 C 0.13 0.32 7.18 -14.53 -0.10 0.21 16 4 N -0.45 -1.82 9.68 -7.72 -0.07 -1.89 16 5 C 0.04 0.12 6.01 -84.41 -0.51 -0.39 16 6 C -0.05 -0.06 3.07 36.00 0.11 0.05 16 7 O -0.53 -1.23 12.64 -35.23 -0.45 -1.68 16 8 Si 0.96 -0.23 26.30 -169.99 -4.47 -4.70 16 9 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 10 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 11 H -0.25 0.12 6.59 56.52 0.37 0.50 16 12 C -0.28 -0.44 9.76 29.17 0.28 -0.16 16 13 S 0.09 0.10 18.83 -107.50 -2.02 -1.92 16 14 Si 1.04 -2.66 11.90 -169.99 -2.02 -4.68 16 15 C -0.45 0.79 8.65 101.05 0.87 1.67 16 16 C -0.44 1.18 8.49 101.05 0.86 2.03 16 17 C -0.45 0.85 7.91 101.05 0.80 1.64 16 18 H 0.11 -0.36 7.26 -52.49 -0.38 -0.74 16 19 H 0.11 0.12 7.66 -52.49 -0.40 -0.29 16 20 H 0.12 0.05 7.96 -51.93 -0.41 -0.36 16 21 H 0.38 -0.18 8.70 45.56 0.40 0.21 16 22 H 0.18 -0.08 6.11 -52.48 -0.32 -0.40 16 23 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 24 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 25 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 26 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 27 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 28 H 0.07 -0.22 7.64 -51.93 -0.40 -0.62 16 29 H 0.07 -0.10 5.02 -37.35 -0.19 -0.29 16 30 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 31 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 LS Contribution 275.62 15.07 4.15 4.15 Total: 0.00 -5.20 275.62 -5.78 -10.98 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: -3.42 Total: -5.53 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 2.53 Total: 5.27 kcal Atomic # 7 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.89 kcal Atomic # 8 Polarization: -1.23 SS G_CDS: -0.45 Total: -1.68 kcal Atomic # 14 Polarization: -2.88 SS G_CDS: -6.49 Total: -9.38 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.02 Total: -1.92 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -5.20 -5.78 -10.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12888840.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.567 kcal (2) G-P(sol) polarization free energy of solvation -5.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds