Wall clock time and date at job start Mon Mar 8 2021 10:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32905 * 1 3 3 C 1.47178 * 119.99434 * 2 1 4 4 N 1.30405 * 125.48305 * 0.02562 * 3 2 1 5 5 C 1.31234 * 117.01991 * 180.02562 * 4 3 2 6 6 C 1.50695 * 122.07276 * 180.02562 * 5 4 3 7 7 O 1.42901 * 109.47035 * 329.99282 * 6 5 4 8 8 Si 1.86300 * 109.47139 * 209.99813 * 6 5 4 9 9 H 1.48494 * 109.47215 * 59.99738 * 8 6 5 10 10 H 1.48497 * 109.47184 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47165 * 299.99564 * 8 6 5 12 12 C 1.33785 * 115.85897 * 359.97438 * 5 4 3 13 13 S 1.76179 * 125.47625 * 180.02562 * 3 2 1 14 14 Si 1.86801 * 120.00456 * 179.97438 * 2 1 3 15 15 C 1.86298 * 109.47333 * 270.00021 * 14 2 1 16 16 C 1.86299 * 109.47020 * 30.00618 * 14 2 1 17 17 C 1.86305 * 109.46810 * 149.99962 * 14 2 1 18 18 H 1.08001 * 119.99354 * 180.02562 * 1 2 3 19 19 H 1.07996 * 120.00371 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47316 * 89.99702 * 6 5 4 21 21 H 0.96702 * 114.00216 * 300.00783 * 7 6 5 22 22 H 1.08005 * 125.88028 * 180.02562 * 12 5 4 23 23 H 1.09005 * 109.46787 * 59.99761 * 15 14 2 24 24 H 1.08999 * 109.46999 * 179.97438 * 15 14 2 25 25 H 1.08998 * 109.46821 * 300.00354 * 15 14 2 26 26 H 1.08993 * 109.47547 * 59.99307 * 16 14 2 27 27 H 1.08999 * 109.47191 * 180.02562 * 16 14 2 28 28 H 1.09005 * 109.46658 * 299.99969 * 16 14 2 29 29 H 1.09003 * 109.47215 * 60.00722 * 17 14 2 30 30 H 1.09003 * 109.46861 * 179.97438 * 17 14 2 31 31 H 1.08992 * 109.47552 * 300.00324 * 17 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3290 0.0000 0.0000 3 6 2.0648 1.2747 0.0000 4 7 1.5236 2.4611 0.0005 5 6 2.3398 3.4887 -0.0001 6 6 1.8375 4.9095 0.0009 7 8 0.5780 4.9699 -0.6714 8 14 3.0637 6.0023 -0.8783 9 1 3.2271 5.5361 -2.2787 10 1 2.5684 7.4023 -0.8779 11 1 4.3726 5.9396 -0.1797 12 6 3.6454 3.1969 -0.0006 13 16 3.8185 1.4430 -0.0006 14 14 2.2632 -1.6177 0.0007 15 6 2.5737 -2.1547 1.7574 16 6 1.2565 -2.9164 -0.8771 17 6 3.8910 -1.3951 -0.8777 18 1 -0.5399 -0.9354 0.0004 19 1 -0.5400 0.9352 -0.0004 20 1 1.7175 5.2518 1.0287 21 1 0.6097 4.6791 -1.5931 22 1 4.4540 3.9129 -0.0008 23 1 1.6213 -2.2849 2.2713 24 1 3.1184 -3.0989 1.7577 25 1 3.1627 -1.3948 2.2708 26 1 1.0748 -2.6022 -1.9048 27 1 1.8014 -3.8605 -0.8763 28 1 0.3040 -3.0466 -0.3632 29 1 4.4801 -0.6352 -0.3641 30 1 4.4363 -2.3389 -0.8768 31 1 3.7094 -1.0808 -1.9054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12888840.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:54:33 Heat of formation + Delta-G solvation = -9.374169 kcal Electronic energy + Delta-G solvation = -13502.916875 eV Core-core repulsion = 11228.322283 eV Total energy + Delta-G solvation = -2274.594592 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 243.062 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.91106 -37.56223 -34.82201 -31.22983 -29.49767 -28.50724 -28.31558 -27.47155 -25.72911 -21.81154 -19.96580 -19.16526 -17.43342 -16.85698 -16.54005 -15.77010 -15.72379 -14.98023 -14.59212 -14.41198 -14.04152 -13.83665 -13.80051 -13.50046 -13.26313 -13.08141 -13.01816 -12.89284 -12.27910 -12.11765 -11.81805 -11.57726 -11.11678 -10.85282 -10.77569 -10.66231 -10.57817 -10.22996 -9.27947 -0.63155 0.33299 0.65999 0.87486 1.13620 1.40082 1.46998 1.65130 1.78543 1.87612 1.92657 2.30561 2.55767 3.09500 3.54667 3.84390 4.15449 4.34196 4.44585 4.69396 4.76778 4.81071 4.84454 4.86106 4.90045 4.91170 5.04887 5.27803 5.54485 5.58297 5.63871 5.69435 6.52008 6.77316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.385 4.385 3 C 0.117 3.883 4 N -0.487 5.487 5 C 0.026 3.974 6 C -0.060 4.060 7 O -0.546 6.546 8 Si 1.005 2.995 9 H -0.259 1.259 10 H -0.261 1.261 11 H -0.241 1.241 12 C -0.292 4.292 13 S 0.114 5.886 14 Si 1.090 2.910 15 C -0.459 4.459 16 C -0.447 4.447 17 C -0.462 4.462 18 H 0.144 0.856 19 H 0.090 0.910 20 H 0.123 0.877 21 H 0.385 0.615 22 H 0.196 0.804 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 -3.624 -0.888 4.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.427 4.427 3 C -0.157 4.157 4 N -0.202 5.202 5 C -0.107 4.107 6 C -0.172 4.172 7 O -0.352 6.352 8 Si 0.825 3.175 9 H -0.183 1.183 10 H -0.185 1.185 11 H -0.165 1.165 12 C -0.430 4.430 13 S 0.372 5.628 14 Si 1.279 2.721 15 C -0.566 4.566 16 C -0.556 4.556 17 C -0.570 4.570 18 H 0.162 0.838 19 H 0.108 0.892 20 H 0.141 0.859 21 H 0.233 0.767 22 H 0.213 0.787 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.810 -3.369 -0.713 4.444 hybrid contribution -0.549 0.825 -0.095 0.996 sum 2.260 -2.543 -0.808 3.497 Atomic orbital electron populations 1.24821 0.95262 1.03522 0.87955 1.28344 1.01706 1.04251 1.08434 1.26634 0.92965 0.95607 1.00472 1.66487 1.38228 0.97937 1.17526 1.20958 0.89246 0.97228 1.03305 1.25194 0.94147 0.93613 1.04199 1.86439 1.30142 1.88704 1.29888 0.84987 0.76240 0.77366 0.78932 1.18291 1.18477 1.16485 1.27425 1.00876 1.01333 1.13395 1.85134 1.08553 1.00144 1.68955 0.77784 0.65254 0.61782 0.67310 1.26220 1.05323 1.06138 1.18888 1.26075 1.09451 1.11896 1.08167 1.26357 1.17035 1.05102 1.08508 0.83840 0.89170 0.85908 0.76719 0.78659 0.90836 0.89982 0.91829 0.90757 0.89962 0.90215 0.91477 0.88976 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.02 13.62 66.65 0.91 0.93 16 2 C -0.39 -0.28 4.69 23.45 0.11 -0.17 16 3 C 0.12 0.68 7.18 87.25 0.63 1.31 16 4 N -0.49 -4.67 9.68 -178.33 -1.73 -6.40 16 5 C 0.03 0.17 6.01 41.63 0.25 0.42 16 6 C -0.06 -0.21 3.07 71.23 0.22 0.01 16 7 O -0.55 -3.41 12.64 -148.98 -1.88 -5.29 16 8 Si 1.00 -0.33 26.30 68.60 1.80 1.47 16 9 H -0.26 -0.28 7.11 99.48 0.71 0.43 16 10 H -0.26 -0.50 7.11 99.48 0.71 0.21 16 11 H -0.24 0.48 6.59 99.48 0.66 1.13 16 12 C -0.29 -1.03 9.76 66.81 0.65 -0.38 16 13 S 0.11 0.29 18.83 -56.49 -1.06 -0.77 16 14 Si 1.09 -6.12 11.90 68.60 0.82 -5.31 16 15 C -0.46 1.81 8.65 113.37 0.98 2.79 16 16 C -0.45 2.95 8.49 113.37 0.96 3.91 16 17 C -0.46 1.93 7.91 113.37 0.90 2.83 16 18 H 0.14 -1.00 7.26 -2.91 -0.02 -1.02 16 19 H 0.09 0.35 7.66 -2.91 -0.02 0.33 16 20 H 0.12 0.27 7.96 -2.39 -0.02 0.25 16 21 H 0.38 0.30 8.70 -74.06 -0.64 -0.34 16 22 H 0.20 -0.26 6.11 -2.91 -0.02 -0.27 16 23 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 24 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 25 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 26 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 27 H 0.08 -0.60 7.96 -2.39 -0.02 -0.62 16 28 H 0.08 -0.61 7.64 -2.38 -0.02 -0.63 16 29 H 0.07 -0.19 5.02 -11.66 -0.06 -0.25 16 30 H 0.09 -0.57 7.96 -2.39 -0.02 -0.59 16 31 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 Total: 0.00 -12.43 275.62 4.69 -7.74 By element: Atomic # 1 Polarization: -4.22 SS G_CDS: 1.13 Total: -3.08 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.61 Total: 11.64 kcal Atomic # 7 Polarization: -4.67 SS G_CDS: -1.73 Total: -6.40 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -1.88 Total: -5.29 kcal Atomic # 14 Polarization: -6.46 SS G_CDS: 2.62 Total: -3.84 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.06 Total: -0.77 kcal Total: -12.43 4.69 -7.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12888840.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.632 kcal (2) G-P(sol) polarization free energy of solvation -12.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds