Wall clock time and date at job start Mon Mar 8 2021 10:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32606 * 1 3 3 C 1.47781 * 120.00002 * 2 1 4 4 C 1.34803 * 122.81169 * 65.51643 * 3 2 1 5 5 C 1.50701 * 125.23379 * 0.24910 * 4 3 2 6 6 S 1.75846 * 109.52895 * 179.97438 * 4 3 2 7 7 C 1.75795 * 91.18125 * 0.02562 * 6 4 3 8 8 C 1.50708 * 124.99873 * 179.97438 * 7 6 4 9 9 O 1.42905 * 109.46511 * 245.02135 * 8 7 6 10 10 Si 1.86296 * 109.47321 * 5.01870 * 8 7 6 11 11 H 1.48508 * 109.46866 * 60.00514 * 10 8 7 12 12 H 1.48503 * 109.47036 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47269 * 300.00714 * 10 8 7 14 14 C 1.32986 * 109.99995 * 359.97438 * 7 6 4 15 15 Si 1.86805 * 120.00218 * 180.02562 * 2 1 3 16 16 C 1.86299 * 109.46999 * 185.13912 * 15 2 1 17 17 C 1.86294 * 109.47118 * 305.14051 * 15 2 1 18 18 C 1.86300 * 109.46987 * 65.14135 * 15 2 1 19 19 H 1.08004 * 119.99704 * 175.03656 * 1 2 3 20 20 H 1.07997 * 120.00376 * 355.03192 * 1 2 3 21 21 H 1.08995 * 109.47299 * 174.67149 * 5 4 3 22 22 H 1.09002 * 109.47331 * 294.67391 * 5 4 3 23 23 H 1.09006 * 109.47093 * 54.66980 * 5 4 3 24 24 H 1.08996 * 109.47461 * 125.02446 * 8 7 6 25 25 H 0.96700 * 113.99956 * 179.97438 * 9 8 7 26 26 H 1.07992 * 122.54127 * 180.02562 * 14 7 6 27 27 H 1.08997 * 109.47020 * 64.91871 * 16 15 2 28 28 H 1.08995 * 109.46992 * 184.91342 * 16 15 2 29 29 H 1.08999 * 109.47684 * 304.91732 * 16 15 2 30 30 H 1.09003 * 109.47097 * 59.99788 * 17 15 2 31 31 H 1.09001 * 109.47378 * 180.02562 * 17 15 2 32 32 H 1.09001 * 109.46905 * 300.00229 * 17 15 2 33 33 H 1.08999 * 109.47142 * 59.99848 * 18 15 2 34 34 H 1.09001 * 109.46838 * 180.02562 * 18 15 2 35 35 H 1.09003 * 109.46960 * 300.00047 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0650 1.2798 0.0000 4 6 2.0236 2.1472 1.0311 5 6 1.2444 1.9465 2.3053 6 16 3.0249 3.5453 0.6637 7 6 3.4571 2.8702 -0.9008 8 6 4.3661 3.5300 -1.9057 9 8 3.6211 3.8532 -3.0816 10 14 5.0755 5.0885 -1.1720 11 1 5.8496 4.7526 0.0500 12 1 5.9706 5.7390 -2.1624 13 1 3.9713 6.0166 -0.8189 14 6 2.8640 1.6916 -1.0672 15 14 2.2601 -1.6177 -0.0007 16 6 4.0856 -1.2808 0.1568 17 6 1.6952 -2.6617 1.4351 18 6 1.9312 -2.5240 -1.5949 19 1 -0.5400 -0.9319 -0.0809 20 1 -0.5400 0.9317 0.0810 21 1 1.4672 2.7571 2.9990 22 1 0.1775 1.9422 2.0821 23 1 1.5249 0.9947 2.7566 24 1 5.1765 2.8488 -2.1648 25 1 4.1439 4.2821 -3.7728 26 1 2.9912 1.0982 -1.9604 27 1 4.2893 -0.8292 1.1277 28 1 4.6368 -2.2170 0.0688 29 1 4.3989 -0.5991 -0.6339 30 1 0.6271 -2.8587 1.3429 31 1 2.2405 -3.6054 1.4350 32 1 1.8876 -2.1314 2.3678 33 1 2.2617 -1.9132 -2.4349 34 1 2.4759 -3.4682 -1.5951 35 1 0.8631 -2.7211 -1.6870 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_13019938.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:56:10 Heat of formation + Delta-G solvation = -36.634823 kcal Electronic energy + Delta-G solvation = -15180.636289 eV Core-core repulsion = 12814.747878 eV Total energy + Delta-G solvation = -2365.888411 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 256.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.53957 -37.74078 -34.03640 -32.28589 -29.50284 -29.31992 -28.39611 -28.26622 -25.17296 -23.96048 -20.96353 -18.96514 -18.58711 -17.84728 -16.37728 -16.06601 -15.75589 -14.79451 -14.72630 -14.34669 -14.18940 -14.15329 -13.91522 -13.86891 -13.49759 -13.31020 -13.28280 -13.20219 -13.05941 -12.97560 -12.70631 -12.39027 -12.22243 -12.04572 -11.65423 -11.26388 -10.84108 -10.81457 -10.38385 -10.10955 -9.33624 -8.98929 0.04508 0.59130 0.84708 1.02498 1.18177 1.44585 1.49488 1.61445 1.89327 1.91417 2.01454 2.21020 2.64452 3.41160 3.84646 4.00946 4.25442 4.36587 4.47134 4.65607 4.71833 4.72538 4.75828 4.76843 4.79117 4.82310 4.84248 4.88392 5.07893 5.14464 5.36033 5.45221 5.47996 5.54512 5.60279 5.70735 5.87470 6.53390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.346 4.346 3 C -0.061 4.061 4 C -0.169 4.169 5 C -0.080 4.080 6 S 0.082 5.918 7 C -0.180 4.180 8 C -0.039 4.039 9 O -0.542 6.542 10 Si 0.890 3.110 11 H -0.234 1.234 12 H -0.232 1.232 13 H -0.232 1.232 14 C -0.086 4.086 15 Si 1.047 2.953 16 C -0.444 4.444 17 C -0.447 4.447 18 C -0.447 4.447 19 H 0.104 0.896 20 H 0.093 0.907 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.381 0.619 26 H 0.142 0.858 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -1.417 -0.016 1.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.390 4.390 3 C -0.072 4.072 4 C -0.286 4.286 5 C -0.139 4.139 6 S 0.348 5.652 7 C -0.297 4.297 8 C -0.152 4.152 9 O -0.348 6.348 10 Si 0.710 3.290 11 H -0.157 1.157 12 H -0.155 1.155 13 H -0.154 1.154 14 C -0.116 4.116 15 Si 1.238 2.762 16 C -0.552 4.552 17 C -0.554 4.554 18 C -0.555 4.555 19 H 0.122 0.878 20 H 0.111 0.889 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.229 0.771 26 H 0.160 0.840 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.184 0.517 1.472 1.959 hybrid contribution -0.180 -1.180 -1.287 1.755 sum 1.004 -0.662 0.185 1.217 Atomic orbital electron populations 1.24208 0.95506 1.01653 0.95098 1.27614 1.00484 1.06922 1.03967 1.17793 1.00386 0.95592 0.93478 1.24678 1.05050 0.97493 1.01396 1.20329 0.98972 1.02697 0.91911 1.84248 1.45840 1.22444 1.12714 1.23320 1.07860 0.99623 0.98853 1.23949 0.95852 1.06936 0.88430 1.86534 1.39231 1.82531 1.26530 0.86328 0.81939 0.78270 0.82443 1.15668 1.15458 1.15425 1.19957 0.96738 0.95718 0.99205 0.78383 0.66554 0.63605 0.67626 1.26072 1.19533 1.04783 1.04812 1.26121 1.05923 1.09361 1.14038 1.26113 1.04974 1.08099 1.16265 0.87832 0.88899 0.91555 0.90550 0.90321 0.89817 0.77145 0.83986 0.91253 0.91302 0.91050 0.91213 0.90999 0.91151 0.91079 0.91082 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.04 13.11 28.83 0.38 0.41 16 2 C -0.35 -0.05 3.92 -37.58 -0.15 -0.19 16 3 C -0.06 -0.12 4.69 -106.73 -0.50 -0.62 16 4 C -0.17 -0.36 6.53 -35.53 -0.23 -0.59 16 5 C -0.08 -0.01 9.54 36.01 0.34 0.33 16 6 S 0.08 0.22 20.53 -107.50 -2.21 -1.98 16 7 C -0.18 -0.46 5.71 -36.13 -0.21 -0.67 16 8 C -0.04 -0.02 2.94 36.01 0.11 0.08 16 9 O -0.54 -0.47 12.86 -35.23 -0.45 -0.92 16 10 Si 0.89 0.45 26.24 -169.99 -4.46 -4.01 16 11 H -0.23 -0.27 7.11 56.52 0.40 0.13 16 12 H -0.23 0.05 7.11 56.52 0.40 0.45 16 13 H -0.23 -0.50 7.11 56.52 0.40 -0.10 16 14 C -0.09 -0.20 9.14 -40.92 -0.37 -0.57 16 15 Si 1.05 -1.82 12.24 -169.99 -2.08 -3.90 16 16 C -0.44 0.26 8.55 101.05 0.86 1.12 16 17 C -0.45 0.59 8.65 101.05 0.87 1.47 16 18 C -0.45 0.51 8.65 101.05 0.87 1.38 16 19 H 0.10 -0.22 7.73 -52.48 -0.41 -0.62 16 20 H 0.09 0.03 7.88 -52.49 -0.41 -0.39 16 21 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 22 H 0.08 -0.03 7.80 -51.93 -0.41 -0.44 16 23 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 24 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 25 H 0.38 -1.44 8.74 45.56 0.40 -1.05 16 26 H 0.14 0.16 8.06 -52.49 -0.42 -0.26 16 27 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 28 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 29 H 0.07 -0.02 7.48 -51.93 -0.39 -0.41 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 32 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 33 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 LS Contribution 310.27 15.07 4.68 4.68 Total: 0.00 -4.49 310.27 -7.54 -12.03 By element: Atomic # 1 Polarization: -3.06 SS G_CDS: -5.00 Total: -8.06 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 1.98 Total: 2.16 kcal Atomic # 8 Polarization: -0.47 SS G_CDS: -0.45 Total: -0.92 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: -6.54 Total: -7.91 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -2.21 Total: -1.98 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -4.49 -7.54 -12.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_13019938.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.600 kcal (2) G-P(sol) polarization free energy of solvation -4.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds