Wall clock time and date at job start Mon Mar 8 2021 10:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32606 * 1 3 3 C 1.47781 * 120.00002 * 2 1 4 4 C 1.34803 * 122.81169 * 65.51643 * 3 2 1 5 5 C 1.50701 * 125.23379 * 0.24910 * 4 3 2 6 6 S 1.75846 * 109.52895 * 179.97438 * 4 3 2 7 7 C 1.75795 * 91.18125 * 0.02562 * 6 4 3 8 8 C 1.50708 * 124.99873 * 179.97438 * 7 6 4 9 9 O 1.42905 * 109.46511 * 245.02135 * 8 7 6 10 10 Si 1.86296 * 109.47321 * 5.01870 * 8 7 6 11 11 H 1.48508 * 109.46866 * 60.00514 * 10 8 7 12 12 H 1.48503 * 109.47036 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47269 * 300.00714 * 10 8 7 14 14 C 1.32986 * 109.99995 * 359.97438 * 7 6 4 15 15 Si 1.86805 * 120.00218 * 180.02562 * 2 1 3 16 16 C 1.86299 * 109.46999 * 185.13912 * 15 2 1 17 17 C 1.86294 * 109.47118 * 305.14051 * 15 2 1 18 18 C 1.86300 * 109.46987 * 65.14135 * 15 2 1 19 19 H 1.08004 * 119.99704 * 175.03656 * 1 2 3 20 20 H 1.07997 * 120.00376 * 355.03192 * 1 2 3 21 21 H 1.08995 * 109.47299 * 174.67149 * 5 4 3 22 22 H 1.09002 * 109.47331 * 294.67391 * 5 4 3 23 23 H 1.09006 * 109.47093 * 54.66980 * 5 4 3 24 24 H 1.08996 * 109.47461 * 125.02446 * 8 7 6 25 25 H 0.96700 * 113.99956 * 179.97438 * 9 8 7 26 26 H 1.07992 * 122.54127 * 180.02562 * 14 7 6 27 27 H 1.08997 * 109.47020 * 64.91871 * 16 15 2 28 28 H 1.08995 * 109.46992 * 184.91342 * 16 15 2 29 29 H 1.08999 * 109.47684 * 304.91732 * 16 15 2 30 30 H 1.09003 * 109.47097 * 59.99788 * 17 15 2 31 31 H 1.09001 * 109.47378 * 180.02562 * 17 15 2 32 32 H 1.09001 * 109.46905 * 300.00229 * 17 15 2 33 33 H 1.08999 * 109.47142 * 59.99848 * 18 15 2 34 34 H 1.09001 * 109.46838 * 180.02562 * 18 15 2 35 35 H 1.09003 * 109.46960 * 300.00047 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0650 1.2798 0.0000 4 6 2.0236 2.1472 1.0311 5 6 1.2444 1.9465 2.3053 6 16 3.0249 3.5453 0.6637 7 6 3.4571 2.8702 -0.9008 8 6 4.3661 3.5300 -1.9057 9 8 3.6211 3.8532 -3.0816 10 14 5.0755 5.0885 -1.1720 11 1 5.8496 4.7526 0.0500 12 1 5.9706 5.7390 -2.1624 13 1 3.9713 6.0166 -0.8189 14 6 2.8640 1.6916 -1.0672 15 14 2.2601 -1.6177 -0.0007 16 6 4.0856 -1.2808 0.1568 17 6 1.6952 -2.6617 1.4351 18 6 1.9312 -2.5240 -1.5949 19 1 -0.5400 -0.9319 -0.0809 20 1 -0.5400 0.9317 0.0810 21 1 1.4672 2.7571 2.9990 22 1 0.1775 1.9422 2.0821 23 1 1.5249 0.9947 2.7566 24 1 5.1765 2.8488 -2.1648 25 1 4.1439 4.2821 -3.7728 26 1 2.9912 1.0982 -1.9604 27 1 4.2893 -0.8292 1.1277 28 1 4.6368 -2.2170 0.0688 29 1 4.3989 -0.5991 -0.6339 30 1 0.6271 -2.8587 1.3429 31 1 2.2405 -3.6054 1.4350 32 1 1.8876 -2.1314 2.3678 33 1 2.2617 -1.9132 -2.4349 34 1 2.4759 -3.4682 -1.5951 35 1 0.8631 -2.7211 -1.6870 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_13019938.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:56:10 Heat of formation + Delta-G solvation = -27.776585 kcal Electronic energy + Delta-G solvation = -15180.252167 eV Core-core repulsion = 12814.747878 eV Total energy + Delta-G solvation = -2365.504289 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 256.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.61999 -37.76279 -34.07356 -32.29850 -29.39366 -29.34541 -28.26184 -28.18573 -25.23069 -24.02555 -21.01218 -19.01442 -18.61432 -17.94710 -16.43687 -16.11565 -15.76512 -14.84619 -14.75628 -14.37378 -14.17704 -14.04837 -13.83481 -13.76982 -13.51534 -13.30641 -13.16940 -13.13610 -12.96474 -12.95533 -12.72744 -12.50078 -12.28891 -12.12027 -11.73493 -11.20112 -10.79070 -10.74382 -10.38783 -10.07569 -9.48388 -9.10934 -0.07692 0.47538 0.76574 1.03094 1.12135 1.37757 1.43310 1.62535 1.83864 2.03667 2.05872 2.30178 2.73067 3.45221 3.83154 3.96434 4.24597 4.37201 4.47381 4.67735 4.73133 4.83746 4.84859 4.87774 4.88800 4.90024 4.90672 4.94665 5.06262 5.06878 5.26729 5.43301 5.58380 5.62233 5.68312 5.70057 5.90023 6.76091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.361 4.361 3 C -0.066 4.066 4 C -0.178 4.178 5 C -0.081 4.081 6 S 0.045 5.955 7 C -0.191 4.191 8 C -0.037 4.037 9 O -0.559 6.559 10 Si 0.911 3.089 11 H -0.248 1.248 12 H -0.216 1.216 13 H -0.262 1.262 14 C -0.095 4.095 15 Si 1.105 2.895 16 C -0.459 4.459 17 C -0.456 4.456 18 C -0.457 4.457 19 H 0.124 0.876 20 H 0.083 0.917 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.108 0.892 25 H 0.400 0.600 26 H 0.152 0.848 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 -2.442 -0.514 2.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.403 4.403 3 C -0.078 4.078 4 C -0.295 4.295 5 C -0.140 4.140 6 S 0.310 5.690 7 C -0.307 4.307 8 C -0.150 4.150 9 O -0.369 6.369 10 Si 0.733 3.267 11 H -0.171 1.171 12 H -0.137 1.137 13 H -0.186 1.186 14 C -0.125 4.125 15 Si 1.293 2.707 16 C -0.566 4.566 17 C -0.563 4.563 18 C -0.564 4.564 19 H 0.142 0.858 20 H 0.101 0.899 21 H 0.087 0.913 22 H 0.100 0.900 23 H 0.107 0.893 24 H 0.126 0.874 25 H 0.251 0.749 26 H 0.170 0.830 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.153 -0.489 0.952 1.573 hybrid contribution -0.183 -0.837 -1.137 1.424 sum 0.970 -1.326 -0.185 1.653 Atomic orbital electron populations 1.24374 0.95443 1.02238 0.94489 1.28007 1.00856 1.06973 1.04471 1.18062 1.00257 0.96229 0.93203 1.24941 1.05219 0.97002 1.02325 1.20401 0.98994 1.03338 0.91245 1.84320 1.46925 1.23774 1.13951 1.23624 1.08318 0.99867 0.98886 1.23967 0.95813 1.07098 0.88108 1.86482 1.40403 1.82924 1.27095 0.86054 0.80762 0.77765 0.82102 1.17109 1.13738 1.18639 1.20187 0.96793 0.95821 0.99702 0.77509 0.64567 0.61848 0.66825 1.26266 1.21243 1.04839 1.04212 1.26214 1.06399 1.09582 1.14118 1.26221 1.05307 1.08359 1.16508 0.85754 0.89878 0.91270 0.90041 0.89308 0.87430 0.74901 0.83001 0.91991 0.90862 0.91506 0.90678 0.90741 0.91345 0.91371 0.90746 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.14 13.11 66.66 0.87 1.01 16 2 C -0.36 -0.01 3.92 23.64 0.09 0.08 16 3 C -0.07 -0.29 4.69 -21.23 -0.10 -0.39 16 4 C -0.18 -0.93 6.53 24.90 0.16 -0.76 16 5 C -0.08 -0.06 9.54 71.24 0.68 0.62 16 6 S 0.05 0.32 20.53 -56.49 -1.16 -0.84 16 7 C -0.19 -1.13 5.71 24.52 0.14 -0.99 16 8 C -0.04 -0.04 2.94 71.24 0.21 0.17 16 9 O -0.56 -0.85 12.86 -148.98 -1.92 -2.77 16 10 Si 0.91 1.55 26.24 68.60 1.80 3.35 16 11 H -0.25 -0.90 7.11 99.48 0.71 -0.19 16 12 H -0.22 0.25 7.11 99.48 0.71 0.96 16 13 H -0.26 -1.69 7.11 99.48 0.71 -0.99 16 14 C -0.09 -0.48 9.14 21.41 0.20 -0.29 16 15 Si 1.10 -4.53 12.24 68.60 0.84 -3.69 16 16 C -0.46 0.52 8.55 113.37 0.97 1.49 16 17 C -0.46 1.65 8.65 113.37 0.98 2.63 16 18 C -0.46 1.47 8.65 113.37 0.98 2.45 16 19 H 0.12 -0.69 7.73 -2.91 -0.02 -0.71 16 20 H 0.08 0.06 7.88 -2.91 -0.02 0.04 16 21 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 22 H 0.08 -0.03 7.80 -2.39 -0.02 -0.05 16 23 H 0.09 -0.13 8.14 -2.38 -0.02 -0.15 16 24 H 0.11 -0.41 7.96 -2.39 -0.02 -0.43 16 25 H 0.40 -3.29 8.74 -74.06 -0.65 -3.94 16 26 H 0.15 0.35 8.06 -2.91 -0.02 0.33 16 27 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 28 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 29 H 0.07 -0.01 7.48 -2.39 -0.02 -0.03 16 30 H 0.07 -0.34 7.96 -2.39 -0.02 -0.35 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 33 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 34 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 35 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 Total: 0.00 -10.87 310.27 5.91 -4.96 By element: Atomic # 1 Polarization: -8.17 SS G_CDS: 1.16 Total: -7.01 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.19 Total: 6.00 kcal Atomic # 8 Polarization: -0.85 SS G_CDS: -1.92 Total: -2.77 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.64 Total: -0.35 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.16 Total: -0.84 kcal Total: -10.87 5.91 -4.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_13019938.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.815 kcal (2) G-P(sol) polarization free energy of solvation -10.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds