Wall clock time and date at job start Mon Mar 8 2021 10:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32585 * 1 3 3 C 1.47797 * 120.00001 * 2 1 4 4 C 1.39531 * 120.11225 * 180.02562 * 3 2 1 5 5 C 1.37952 * 119.87790 * 180.02562 * 4 3 2 6 6 C 1.38549 * 120.11586 * 0.02562 * 5 4 3 7 7 F 1.35103 * 119.88046 * 179.97438 * 6 5 4 8 8 C 1.38598 * 120.23566 * 0.02562 * 6 5 4 9 9 C 1.50701 * 119.94069 * 179.97438 * 8 6 5 10 10 O 1.42895 * 109.47079 * 195.00569 * 9 8 6 11 11 Si 1.86301 * 109.47149 * 315.00064 * 9 8 6 12 12 H 1.48506 * 109.47302 * 59.99966 * 11 9 8 13 13 H 1.48503 * 109.47334 * 300.00099 * 11 9 8 14 14 H 1.48500 * 109.47376 * 180.02562 * 11 9 8 15 15 C 1.37895 * 120.11719 * 0.25419 * 8 6 5 16 16 Si 1.86796 * 119.99659 * 180.02562 * 2 1 3 17 17 C 1.86302 * 109.47172 * 239.99842 * 16 2 1 18 18 C 1.86301 * 109.47316 * 359.97438 * 16 2 1 19 19 C 1.86300 * 109.47089 * 119.99955 * 16 2 1 20 20 H 1.07997 * 120.00185 * 180.02562 * 1 2 3 21 21 H 1.07993 * 119.99612 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.06020 * 359.97438 * 4 3 2 23 23 H 1.08000 * 119.93916 * 179.97438 * 5 4 3 24 24 H 1.09001 * 109.47380 * 74.99966 * 9 8 6 25 25 H 0.96696 * 114.00435 * 59.99627 * 10 9 8 26 26 H 1.08004 * 120.06166 * 179.70019 * 15 8 6 27 27 H 1.08994 * 109.47250 * 59.99434 * 17 16 2 28 28 H 1.09002 * 109.47523 * 180.02562 * 17 16 2 29 29 H 1.09004 * 109.46670 * 300.00241 * 17 16 2 30 30 H 1.09001 * 109.47158 * 60.00221 * 18 16 2 31 31 H 1.09010 * 109.46820 * 179.97438 * 18 16 2 32 32 H 1.08995 * 109.47041 * 299.99619 * 18 16 2 33 33 H 1.08997 * 109.47342 * 60.00109 * 19 16 2 34 34 H 1.09007 * 109.47178 * 180.02562 * 19 16 2 35 35 H 1.09001 * 109.47070 * 299.99586 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3258 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 3.4601 1.2827 -0.0005 5 6 4.1450 2.4802 0.0000 6 6 3.4498 3.6786 0.0016 7 9 4.1253 4.8486 0.0027 8 6 2.0638 3.6815 0.0032 9 6 1.3143 4.9889 0.0056 10 8 -0.0511 4.7546 0.3557 11 14 2.0844 6.1440 1.2479 12 1 3.5035 6.3875 0.8842 13 1 2.0179 5.5328 2.5998 14 1 1.3456 7.4321 1.2507 15 6 1.3695 2.4901 0.0085 16 14 2.2597 -1.6178 -0.0007 17 6 3.3308 -1.7172 1.5204 18 6 1.0491 -3.0338 -0.0006 19 6 3.3308 -1.7158 -1.5219 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5399 0.9353 0.0004 22 1 4.0029 0.3491 -0.0005 23 1 5.2250 2.4835 0.0000 24 1 1.3632 5.4375 -0.9866 25 1 -0.1705 4.3557 1.2284 26 1 0.2894 2.4934 0.0147 27 1 2.7043 -1.6597 2.4103 28 1 3.8762 -2.6610 1.5198 29 1 4.0392 -0.8887 1.5206 30 1 0.4221 -2.9758 -0.8903 31 1 1.5941 -3.9778 -0.0015 32 1 0.4228 -2.9762 0.8897 33 1 4.0391 -0.8874 -1.5216 34 1 3.8754 -2.6601 -1.5226 35 1 2.7041 -1.6577 -2.4119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_13286442.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:57:10 Heat of formation + Delta-G solvation = -71.853571 kcal Electronic energy + Delta-G solvation = -16890.899208 eV Core-core repulsion = 14120.414995 eV Total energy + Delta-G solvation = -2770.484213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.13741 -40.50692 -37.86431 -34.91558 -32.70018 -30.25264 -29.66187 -28.46854 -28.41557 -27.01701 -24.38437 -22.73077 -20.41851 -18.94496 -18.54231 -17.46284 -16.99619 -16.53767 -15.85697 -15.80924 -15.30125 -15.03548 -14.66553 -14.26223 -14.11883 -13.99953 -13.95108 -13.70344 -13.41931 -13.34615 -13.28889 -13.15883 -12.91671 -12.70613 -12.21681 -11.96325 -11.57668 -11.26470 -10.99082 -10.91832 -10.74935 -10.60096 -9.80896 -9.06308 -0.24931 0.14438 1.09937 1.26351 1.49323 1.57229 1.62880 1.76235 1.96132 2.04705 2.47123 2.76887 3.16745 3.30426 3.48478 3.73995 3.82386 4.11546 4.27582 4.47061 4.60981 4.63304 4.66928 4.67429 4.69121 4.70536 4.73092 4.78319 4.84925 5.05864 5.17334 5.26136 5.35581 5.41592 5.48502 5.50841 5.71661 5.89816 6.40976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.373 4.373 3 C -0.035 4.035 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.081 3.919 7 F -0.129 7.129 8 C -0.145 4.145 9 C -0.078 4.078 10 O -0.537 6.537 11 Si 0.939 3.061 12 H -0.227 1.227 13 H -0.253 1.253 14 H -0.255 1.255 15 C -0.084 4.084 16 Si 1.047 2.953 17 C -0.451 4.451 18 C -0.450 4.450 19 C -0.451 4.451 20 H 0.109 0.891 21 H 0.098 0.902 22 H 0.139 0.861 23 H 0.140 0.860 24 H 0.125 0.875 25 H 0.377 0.623 26 H 0.143 0.857 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -3.223 0.688 3.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.415 4.415 3 C -0.036 4.036 4 C -0.118 4.118 5 C -0.158 4.158 6 C 0.062 3.938 7 F -0.107 7.107 8 C -0.146 4.146 9 C -0.188 4.188 10 O -0.341 6.341 11 Si 0.760 3.240 12 H -0.149 1.149 13 H -0.177 1.177 14 H -0.179 1.179 15 C -0.101 4.101 16 Si 1.239 2.761 17 C -0.558 4.558 18 C -0.558 4.558 19 C -0.559 4.559 20 H 0.127 0.873 21 H 0.116 0.884 22 H 0.156 0.844 23 H 0.158 0.842 24 H 0.143 0.857 25 H 0.224 0.776 26 H 0.160 0.840 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.135 -2.290 0.699 2.399 hybrid contribution -0.043 -0.236 0.101 0.260 sum 0.092 -2.526 0.800 2.652 Atomic orbital electron populations 1.24473 0.95797 1.02324 0.93998 1.28023 1.01194 1.07940 1.04305 1.19012 0.92866 0.93111 0.98561 1.21294 0.93525 0.97856 0.99115 1.21094 1.01075 0.90937 1.02723 1.17583 0.89375 0.81882 1.04990 1.91558 1.80421 1.44973 1.93777 1.20309 0.92191 0.97564 1.04565 1.24913 0.86105 0.98607 1.09173 1.86499 1.22845 1.84940 1.39854 0.86063 0.81210 0.79254 0.77505 1.14914 1.17683 1.17895 1.21065 1.00867 0.89909 0.98288 0.78385 0.66474 0.63580 0.67709 1.26215 1.09717 1.04659 1.15251 1.26145 1.11358 1.13705 1.04622 1.26218 1.09730 1.04642 1.15283 0.87331 0.88398 0.84389 0.84204 0.85744 0.77604 0.83971 0.90961 0.90919 0.91062 0.91007 0.90775 0.91007 0.91054 0.90926 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.20 13.39 28.83 0.39 0.58 16 2 C -0.37 0.39 4.70 -37.58 -0.18 0.21 16 3 C -0.04 -0.01 5.84 -105.01 -0.61 -0.63 16 4 C -0.10 0.01 8.70 -39.20 -0.34 -0.33 16 5 C -0.14 -0.08 10.01 -39.57 -0.40 -0.48 16 6 C 0.08 0.15 6.67 -39.33 -0.26 -0.11 16 7 F -0.13 -0.34 12.82 2.25 0.03 -0.31 16 8 C -0.15 -0.18 5.13 -104.61 -0.54 -0.72 16 9 C -0.08 -0.04 2.97 36.01 0.11 0.07 16 10 O -0.54 -0.18 11.64 -35.23 -0.41 -0.59 16 11 Si 0.94 0.87 26.09 -169.99 -4.43 -3.56 16 12 H -0.23 -0.44 5.28 56.52 0.30 -0.14 16 13 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 14 H -0.25 -0.52 7.11 56.52 0.40 -0.11 16 15 C -0.08 -0.06 8.58 -39.21 -0.34 -0.39 16 16 Si 1.05 -2.94 10.79 -169.99 -1.84 -4.77 16 17 C -0.45 0.92 8.65 101.05 0.87 1.79 16 18 C -0.45 1.05 7.86 101.05 0.79 1.84 16 19 C -0.45 0.85 8.65 101.05 0.87 1.73 16 20 H 0.11 -0.32 7.05 -52.49 -0.37 -0.69 16 21 H 0.10 -0.18 6.03 -52.49 -0.32 -0.49 16 22 H 0.14 -0.30 3.70 -52.49 -0.19 -0.49 16 23 H 0.14 -0.17 8.06 -52.49 -0.42 -0.60 16 24 H 0.13 0.00 7.96 -51.93 -0.41 -0.42 16 25 H 0.38 -1.12 8.42 45.56 0.38 -0.73 16 26 H 0.14 -0.07 5.17 -52.48 -0.27 -0.35 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.15 6.57 -51.93 -0.34 -0.49 16 30 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.17 7.96 -51.92 -0.41 -0.59 16 32 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 33 H 0.07 -0.13 6.57 -51.93 -0.34 -0.48 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 LS Contribution 287.27 15.07 4.33 4.33 Total: 0.00 -4.24 287.27 -6.03 -10.27 By element: Atomic # 1 Polarization: -4.84 SS G_CDS: -4.08 Total: -8.92 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 0.37 Total: 3.56 kcal Atomic # 8 Polarization: -0.18 SS G_CDS: -0.41 Total: -0.59 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.03 Total: -0.31 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: -6.27 Total: -8.33 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -4.24 -6.03 -10.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_13286442.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.586 kcal (2) G-P(sol) polarization free energy of solvation -4.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds