Wall clock time and date at job start Mon Mar 8 2021 10:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32585 * 1 3 3 C 1.47797 * 120.00001 * 2 1 4 4 C 1.39531 * 120.11225 * 180.02562 * 3 2 1 5 5 C 1.37952 * 119.87790 * 180.02562 * 4 3 2 6 6 C 1.38549 * 120.11586 * 0.02562 * 5 4 3 7 7 F 1.35103 * 119.88046 * 179.97438 * 6 5 4 8 8 C 1.38598 * 120.23566 * 0.02562 * 6 5 4 9 9 C 1.50701 * 119.94069 * 179.97438 * 8 6 5 10 10 O 1.42895 * 109.47079 * 195.00569 * 9 8 6 11 11 Si 1.86301 * 109.47149 * 315.00064 * 9 8 6 12 12 H 1.48506 * 109.47302 * 59.99966 * 11 9 8 13 13 H 1.48503 * 109.47334 * 300.00099 * 11 9 8 14 14 H 1.48500 * 109.47376 * 180.02562 * 11 9 8 15 15 C 1.37895 * 120.11719 * 0.25419 * 8 6 5 16 16 Si 1.86796 * 119.99659 * 180.02562 * 2 1 3 17 17 C 1.86302 * 109.47172 * 239.99842 * 16 2 1 18 18 C 1.86301 * 109.47316 * 359.97438 * 16 2 1 19 19 C 1.86300 * 109.47089 * 119.99955 * 16 2 1 20 20 H 1.07997 * 120.00185 * 180.02562 * 1 2 3 21 21 H 1.07993 * 119.99612 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.06020 * 359.97438 * 4 3 2 23 23 H 1.08000 * 119.93916 * 179.97438 * 5 4 3 24 24 H 1.09001 * 109.47380 * 74.99966 * 9 8 6 25 25 H 0.96696 * 114.00435 * 59.99627 * 10 9 8 26 26 H 1.08004 * 120.06166 * 179.70019 * 15 8 6 27 27 H 1.08994 * 109.47250 * 59.99434 * 17 16 2 28 28 H 1.09002 * 109.47523 * 180.02562 * 17 16 2 29 29 H 1.09004 * 109.46670 * 300.00241 * 17 16 2 30 30 H 1.09001 * 109.47158 * 60.00221 * 18 16 2 31 31 H 1.09010 * 109.46820 * 179.97438 * 18 16 2 32 32 H 1.08995 * 109.47041 * 299.99619 * 18 16 2 33 33 H 1.08997 * 109.47342 * 60.00109 * 19 16 2 34 34 H 1.09007 * 109.47178 * 180.02562 * 19 16 2 35 35 H 1.09001 * 109.47070 * 299.99586 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3258 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 3.4601 1.2827 -0.0005 5 6 4.1450 2.4802 0.0000 6 6 3.4498 3.6786 0.0016 7 9 4.1253 4.8486 0.0027 8 6 2.0638 3.6815 0.0032 9 6 1.3143 4.9889 0.0056 10 8 -0.0511 4.7546 0.3557 11 14 2.0844 6.1440 1.2479 12 1 3.5035 6.3875 0.8842 13 1 2.0179 5.5328 2.5998 14 1 1.3456 7.4321 1.2507 15 6 1.3695 2.4901 0.0085 16 14 2.2597 -1.6178 -0.0007 17 6 3.3308 -1.7172 1.5204 18 6 1.0491 -3.0338 -0.0006 19 6 3.3308 -1.7158 -1.5219 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5399 0.9353 0.0004 22 1 4.0029 0.3491 -0.0005 23 1 5.2250 2.4835 0.0000 24 1 1.3632 5.4375 -0.9866 25 1 -0.1705 4.3557 1.2284 26 1 0.2894 2.4934 0.0147 27 1 2.7043 -1.6597 2.4103 28 1 3.8762 -2.6610 1.5198 29 1 4.0392 -0.8887 1.5206 30 1 0.4221 -2.9758 -0.8903 31 1 1.5941 -3.9778 -0.0015 32 1 0.4228 -2.9762 0.8897 33 1 4.0391 -0.8874 -1.5216 34 1 3.8754 -2.6601 -1.5226 35 1 2.7041 -1.6577 -2.4119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_13286442.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:57:09 Heat of formation + Delta-G solvation = -63.021143 kcal Electronic energy + Delta-G solvation = -16890.516206 eV Core-core repulsion = 14120.414995 eV Total energy + Delta-G solvation = -2770.101211 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.25463 -40.50459 -37.86815 -34.84058 -32.70028 -30.18970 -29.47643 -28.27560 -28.23745 -27.01585 -24.37462 -22.73153 -20.34588 -18.98573 -18.57577 -17.49739 -17.08243 -16.52407 -15.87971 -15.81729 -15.26302 -15.04212 -14.67272 -14.12623 -13.96320 -13.91340 -13.86779 -13.64942 -13.27542 -13.19489 -13.12835 -12.97376 -12.77356 -12.70693 -12.25734 -12.03485 -11.50353 -11.34638 -10.89926 -10.77731 -10.63977 -10.51544 -9.82563 -9.05004 -0.24971 0.13165 1.08354 1.31517 1.37792 1.46258 1.82837 1.87105 1.99209 2.18920 2.65760 2.79327 3.15883 3.32484 3.45638 3.78478 3.88381 4.16426 4.28874 4.46980 4.75254 4.79828 4.83223 4.84623 4.85335 4.87545 4.89526 4.89768 4.95211 5.07553 5.18703 5.29670 5.45597 5.60557 5.67525 5.70347 5.77921 5.94955 6.55037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.391 4.391 3 C -0.041 4.041 4 C -0.105 4.105 5 C -0.144 4.144 6 C 0.058 3.942 7 F -0.138 7.138 8 C -0.151 4.151 9 C -0.072 4.072 10 O -0.545 6.545 11 Si 0.968 3.032 12 H -0.243 1.243 13 H -0.261 1.261 14 H -0.271 1.271 15 C -0.094 4.094 16 Si 1.102 2.898 17 C -0.464 4.464 18 C -0.461 4.461 19 C -0.465 4.465 20 H 0.124 0.876 21 H 0.098 0.902 22 H 0.157 0.843 23 H 0.155 0.845 24 H 0.128 0.872 25 H 0.390 0.610 26 H 0.152 0.848 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 -4.257 0.679 4.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.431 4.431 3 C -0.041 4.041 4 C -0.123 4.123 5 C -0.163 4.163 6 C 0.039 3.961 7 F -0.117 7.117 8 C -0.152 4.152 9 C -0.182 4.182 10 O -0.352 6.352 11 Si 0.791 3.209 12 H -0.167 1.167 13 H -0.185 1.185 14 H -0.196 1.196 15 C -0.111 4.111 16 Si 1.290 2.710 17 C -0.571 4.571 18 C -0.568 4.568 19 C -0.572 4.572 20 H 0.142 0.858 21 H 0.116 0.884 22 H 0.174 0.826 23 H 0.172 0.828 24 H 0.146 0.854 25 H 0.240 0.760 26 H 0.169 0.831 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.174 -3.322 0.699 3.399 hybrid contribution 0.030 0.061 0.118 0.136 sum -0.145 -3.262 0.816 3.366 Atomic orbital electron populations 1.24699 0.95829 1.03126 0.92943 1.28384 1.01656 1.08117 1.04940 1.19298 0.93304 0.93656 0.97819 1.21555 0.93617 0.98405 0.98679 1.21344 1.01982 0.90756 1.02200 1.17832 0.89812 0.82028 1.06474 1.91527 1.80614 1.45545 1.94034 1.20406 0.92130 0.98013 1.04679 1.24815 0.86116 0.98242 1.09068 1.86465 1.22563 1.85114 1.41070 0.85663 0.79756 0.78310 0.77133 1.16685 1.18503 1.19591 1.21243 1.01433 0.89920 0.98538 0.77540 0.65171 0.62045 0.66259 1.26363 1.10068 1.04879 1.15751 1.26255 1.11703 1.14049 1.04825 1.26383 1.10108 1.04858 1.15842 0.85846 0.88408 0.82552 0.82775 0.85422 0.76041 0.83084 0.91223 0.90570 0.91059 0.90868 0.90647 0.90760 0.91084 0.90563 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.50 13.39 66.66 0.89 1.39 16 2 C -0.39 1.04 4.70 23.65 0.11 1.15 16 3 C -0.04 -0.03 5.84 -20.11 -0.12 -0.14 16 4 C -0.11 0.03 8.70 22.51 0.20 0.23 16 5 C -0.14 -0.21 10.01 22.28 0.22 0.01 16 6 C 0.06 0.26 6.67 22.43 0.15 0.41 16 7 F -0.14 -0.92 12.82 44.97 0.58 -0.34 16 8 C -0.15 -0.47 5.13 -19.86 -0.10 -0.57 16 9 C -0.07 -0.12 2.97 71.24 0.21 0.09 16 10 O -0.55 -0.40 11.64 -148.98 -1.73 -2.14 16 11 Si 0.97 2.84 26.09 68.60 1.79 4.62 16 12 H -0.24 -1.33 5.28 99.48 0.53 -0.80 16 13 H -0.26 -1.00 7.11 99.48 0.71 -0.30 16 14 H -0.27 -1.41 7.11 99.48 0.71 -0.71 16 15 C -0.09 -0.14 8.58 22.51 0.19 0.05 16 16 Si 1.10 -7.04 10.79 68.60 0.74 -6.30 16 17 C -0.46 2.20 8.65 113.37 0.98 3.18 16 18 C -0.46 2.59 7.86 113.37 0.89 3.48 16 19 C -0.47 2.02 8.65 113.37 0.98 3.00 16 20 H 0.12 -0.88 7.05 -2.91 -0.02 -0.90 16 21 H 0.10 -0.40 6.03 -2.91 -0.02 -0.42 16 22 H 0.16 -0.77 3.70 -2.91 -0.01 -0.78 16 23 H 0.15 -0.37 8.06 -2.91 -0.02 -0.40 16 24 H 0.13 0.08 7.96 -2.39 -0.02 0.06 16 25 H 0.39 -2.31 8.42 -74.06 -0.62 -2.93 16 26 H 0.15 -0.17 5.17 -2.91 -0.02 -0.18 16 27 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 28 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 29 H 0.07 -0.33 6.57 -2.38 -0.02 -0.35 16 30 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 31 H 0.07 -0.42 7.96 -2.38 -0.02 -0.44 16 32 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 33 H 0.07 -0.30 6.57 -2.39 -0.02 -0.32 16 34 H 0.08 -0.38 7.96 -2.38 -0.02 -0.40 16 35 H 0.07 -0.23 7.96 -2.39 -0.02 -0.24 16 Total: 0.00 -9.63 287.27 7.03 -2.60 By element: Atomic # 1 Polarization: -11.77 SS G_CDS: 1.05 Total: -10.72 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 4.61 Total: 12.27 kcal Atomic # 8 Polarization: -0.40 SS G_CDS: -1.73 Total: -2.14 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.58 Total: -0.34 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.53 Total: -1.68 kcal Total: -9.63 7.03 -2.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_13286442.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.417 kcal (2) G-P(sol) polarization free energy of solvation -9.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds