Wall clock time and date at job start Mon Mar 8 2021 10:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32585 * 1 3 3 C 1.47796 * 119.99708 * 2 1 4 4 C 1.39532 * 120.11465 * 243.99955 * 3 2 1 5 5 C 1.37944 * 119.88016 * 179.97438 * 4 3 2 6 6 C 1.38552 * 120.11854 * 0.02562 * 5 4 3 7 7 F 1.35101 * 119.88244 * 179.97438 * 6 5 4 8 8 C 1.38598 * 120.23471 * 359.74708 * 6 5 4 9 9 C 1.37911 * 120.11029 * 0.50788 * 8 6 5 10 10 C 1.50705 * 120.05497 * 179.76840 * 9 8 6 11 11 O 1.42902 * 109.46888 * 255.55068 * 10 9 8 12 12 Si 1.86305 * 109.47067 * 15.55075 * 10 9 8 13 13 H 1.48500 * 109.47126 * 59.99691 * 12 10 9 14 14 H 1.48499 * 109.47053 * 299.99743 * 12 10 9 15 15 H 1.48495 * 109.46872 * 179.97438 * 12 10 9 16 16 Si 1.86800 * 119.99792 * 180.02562 * 2 1 3 17 17 C 1.86309 * 109.46765 * 239.99923 * 16 2 1 18 18 C 1.86292 * 109.47475 * 359.97438 * 16 2 1 19 19 C 1.86298 * 109.46938 * 120.00370 * 16 2 1 20 20 H 1.08000 * 119.99856 * 175.13296 * 1 2 3 21 21 H 1.08000 * 119.99883 * 355.13437 * 1 2 3 22 22 H 1.08000 * 120.05713 * 0.02562 * 4 3 2 23 23 H 1.08006 * 119.94170 * 180.02562 * 5 4 3 24 24 H 1.08002 * 119.94661 * 180.27721 * 8 6 5 25 25 H 1.08996 * 109.46934 * 135.54725 * 10 9 8 26 26 H 0.96698 * 113.99496 * 304.70261 * 11 10 9 27 27 H 1.08998 * 109.46941 * 60.00449 * 17 16 2 28 28 H 1.09004 * 109.46640 * 180.02562 * 17 16 2 29 29 H 1.09003 * 109.46966 * 300.00026 * 17 16 2 30 30 H 1.08998 * 109.47449 * 59.99835 * 18 16 2 31 31 H 1.08999 * 109.47333 * 180.02562 * 18 16 2 32 32 H 1.09007 * 109.47178 * 300.00242 * 18 16 2 33 33 H 1.08999 * 109.47634 * 59.99977 * 19 16 2 34 34 H 1.08999 * 109.46843 * 179.97438 * 19 16 2 35 35 H 1.09003 * 109.47013 * 299.99134 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3258 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 2.8730 1.6218 -1.0848 5 6 3.5601 2.8179 -1.0800 6 6 3.4492 3.6790 -0.0003 7 9 4.1246 4.8491 -0.0003 8 6 2.6440 3.3465 1.0777 9 6 1.9569 2.1508 1.0853 10 6 1.0859 1.7882 2.2604 11 8 1.7467 0.8028 3.0570 12 14 0.7679 3.3079 3.2901 13 1 0.0814 4.3319 2.4623 14 1 2.0594 3.8526 3.7807 15 1 -0.0908 2.9507 4.4477 16 14 2.2598 -1.6178 -0.0007 17 6 3.3309 -1.7171 1.5205 18 6 1.0492 -3.0338 -0.0006 19 6 3.3309 -1.7157 -1.5218 20 1 -0.5400 -0.9319 -0.0794 21 1 -0.5400 0.9319 0.0793 22 1 2.9598 0.9514 -1.9271 23 1 4.1857 3.0836 -1.9194 24 1 2.5574 4.0233 1.9150 25 1 0.1380 1.3884 1.9004 26 1 2.0082 0.0115 2.5666 27 1 2.7042 -1.6598 2.4104 28 1 3.8762 -2.6609 1.5198 29 1 4.0392 -0.8885 1.5208 30 1 0.4222 -2.9759 -0.8902 31 1 1.5942 -3.9777 -0.0005 32 1 0.4229 -2.9762 0.8897 33 1 4.0393 -0.8873 -1.5215 34 1 3.8762 -2.6595 -1.5220 35 1 2.7042 -1.6577 -2.4118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_13286464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:59:06 Heat of formation + Delta-G solvation = -75.062217 kcal Electronic energy + Delta-G solvation = -17262.951239 eV Core-core repulsion = 14492.327888 eV Total energy + Delta-G solvation = -2770.623351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 254.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.98657 -40.74620 -37.55483 -34.77231 -32.86344 -30.35445 -29.40060 -28.37801 -28.16341 -27.04985 -24.08085 -22.88517 -20.71688 -18.91622 -18.12357 -17.37424 -17.16833 -16.68175 -16.05703 -15.65286 -15.43443 -14.96538 -14.69356 -14.16578 -14.04750 -13.90621 -13.81889 -13.66752 -13.22762 -13.15723 -13.10964 -12.94561 -12.80096 -12.67012 -12.31434 -11.93008 -11.50359 -11.30734 -11.02107 -10.81073 -10.75171 -10.19219 -10.14497 -9.32418 -0.08129 0.06675 1.00563 1.12206 1.40070 1.43502 1.80707 1.86321 2.02946 2.17591 2.47410 2.70036 3.12884 3.49970 3.64816 3.80762 3.83670 4.08869 4.20680 4.44739 4.70302 4.77045 4.82057 4.83687 4.85256 4.89928 4.91769 4.92499 4.96636 5.01733 5.10537 5.32030 5.42463 5.59855 5.67628 5.68876 5.73171 5.86945 6.53585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.400 4.400 3 C -0.028 4.028 4 C -0.088 4.088 5 C -0.144 4.144 6 C 0.073 3.927 7 F -0.151 7.151 8 C -0.167 4.167 9 C -0.098 4.098 10 C -0.094 4.094 11 O -0.548 6.548 12 Si 1.017 2.983 13 H -0.243 1.243 14 H -0.269 1.269 15 H -0.261 1.261 16 Si 1.109 2.891 17 C -0.474 4.474 18 C -0.460 4.460 19 C -0.464 4.464 20 H 0.131 0.869 21 H 0.094 0.906 22 H 0.163 0.837 23 H 0.155 0.845 24 H 0.133 0.867 25 H 0.101 0.899 26 H 0.373 0.627 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.244 -4.488 -2.813 5.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.440 4.440 3 C -0.028 4.028 4 C -0.106 4.106 5 C -0.162 4.162 6 C 0.054 3.946 7 F -0.129 7.129 8 C -0.186 4.186 9 C -0.098 4.098 10 C -0.203 4.203 11 O -0.358 6.358 12 Si 0.839 3.161 13 H -0.167 1.167 14 H -0.194 1.194 15 H -0.186 1.186 16 Si 1.296 2.704 17 C -0.580 4.580 18 C -0.568 4.568 19 C -0.571 4.571 20 H 0.149 0.851 21 H 0.112 0.888 22 H 0.181 0.819 23 H 0.172 0.828 24 H 0.151 0.849 25 H 0.119 0.881 26 H 0.225 0.775 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.506 -3.202 -1.857 4.470 hybrid contribution 0.546 -0.062 -0.607 0.818 sum -1.961 -3.264 -2.463 4.535 Atomic orbital electron populations 1.24624 0.95252 1.03206 0.92188 1.28269 1.01527 1.07591 1.06579 1.19113 0.96747 0.94270 0.92655 1.21467 0.94600 0.95863 0.98652 1.21406 1.02030 0.94702 0.98082 1.17919 0.96136 0.83435 0.97083 1.91484 1.78465 1.46123 1.96859 1.21164 0.99525 0.98999 0.98910 1.20269 0.98847 0.93672 0.97060 1.25411 0.97037 1.02244 0.95566 1.86730 1.79678 1.31050 1.38324 0.84404 0.79551 0.73910 0.78246 1.16652 1.19375 1.18567 0.77465 0.64824 0.61717 0.66353 1.26435 1.10483 1.04947 1.16095 1.26246 1.11642 1.13774 1.05105 1.26315 1.10136 1.04770 1.15887 0.85144 0.88780 0.81924 0.82767 0.84929 0.88092 0.77544 0.90745 0.90274 0.91689 0.90494 0.90751 0.90598 0.91113 0.90912 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.75 12.04 66.66 0.80 1.55 16 2 C -0.40 2.02 2.88 23.65 0.07 2.09 16 3 C -0.03 0.01 4.90 -20.12 -0.10 -0.09 16 4 C -0.09 0.12 9.13 22.51 0.21 0.33 16 5 C -0.14 -0.19 10.01 22.27 0.22 0.03 16 6 C 0.07 0.44 7.30 22.43 0.16 0.60 16 7 F -0.15 -1.34 17.26 44.97 0.78 -0.56 16 8 C -0.17 -0.94 8.63 22.28 0.19 -0.75 16 9 C -0.10 -0.28 5.24 -19.62 -0.10 -0.38 16 10 C -0.09 -0.15 2.17 71.24 0.15 0.00 16 11 O -0.55 -1.87 12.68 -148.98 -1.89 -3.76 16 12 Si 1.02 3.04 25.77 68.60 1.77 4.80 16 13 H -0.24 -0.52 7.11 99.48 0.71 0.19 16 14 H -0.27 -1.58 6.72 99.48 0.67 -0.91 16 15 H -0.26 -1.11 7.11 99.48 0.71 -0.41 16 16 Si 1.11 -9.11 11.77 68.60 0.81 -8.30 16 17 C -0.47 2.31 7.73 113.37 0.88 3.19 16 18 C -0.46 3.56 7.88 113.37 0.89 4.46 16 19 C -0.46 3.01 8.11 113.37 0.92 3.93 16 20 H 0.13 -1.34 7.07 -2.91 -0.02 -1.36 16 21 H 0.09 -0.54 7.32 -2.91 -0.02 -0.56 16 22 H 0.16 -1.03 6.85 -2.91 -0.02 -1.05 16 23 H 0.15 -0.38 8.06 -2.91 -0.02 -0.41 16 24 H 0.13 0.69 4.89 -2.91 -0.01 0.68 16 25 H 0.10 -0.27 5.45 -2.39 -0.01 -0.28 16 26 H 0.37 -0.45 4.71 -74.06 -0.35 -0.79 16 27 H 0.07 -0.39 6.43 -2.39 -0.02 -0.41 16 28 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 29 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H 0.08 -0.64 7.96 -2.39 -0.02 -0.66 16 31 H 0.07 -0.53 7.96 -2.39 -0.02 -0.55 16 32 H 0.07 -0.61 7.96 -2.38 -0.02 -0.63 16 33 H 0.07 -0.42 7.09 -2.39 -0.02 -0.43 16 34 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 35 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 Total: 0.00 -9.31 288.03 7.22 -2.10 By element: Atomic # 1 Polarization: -10.70 SS G_CDS: 1.46 Total: -9.24 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 4.30 Total: 14.96 kcal Atomic # 8 Polarization: -1.87 SS G_CDS: -1.89 Total: -3.76 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.78 Total: -0.56 kcal Atomic # 14 Polarization: -6.07 SS G_CDS: 2.58 Total: -3.49 kcal Total: -9.31 7.22 -2.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_13286464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.967 kcal (2) G-P(sol) polarization free energy of solvation -9.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds