Wall clock time and date at job start Mon Mar 8 2021 10:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33085 * 1 3 3 C 1.46976 * 119.99821 * 2 1 4 4 C 1.37887 * 126.69834 * 290.01309 * 3 2 1 5 5 C 1.50691 * 125.85971 * 359.97438 * 4 3 2 6 6 O 1.42904 * 109.47541 * 329.99806 * 5 4 3 7 7 Si 1.86300 * 109.47146 * 210.00007 * 5 4 3 8 8 H 1.48501 * 109.47219 * 60.00014 * 7 5 4 9 9 H 1.48500 * 109.47604 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47122 * 300.00236 * 7 5 4 11 11 N 1.32938 * 108.27457 * 179.97438 * 4 3 2 12 12 C 1.32809 * 109.64297 * 0.02562 * 11 4 3 13 13 C 1.40842 * 131.96299 * 179.97438 * 12 11 4 14 14 C 1.36120 * 119.38110 * 180.02562 * 13 12 11 15 15 C 1.40405 * 119.69548 * 359.97438 * 14 13 12 16 16 C 1.35041 * 120.22583 * 359.97438 * 15 14 13 17 17 N 1.36353 * 120.61267 * 0.02562 * 16 15 14 18 18 Si 1.86802 * 120.00157 * 179.97438 * 2 1 3 19 19 C 1.86294 * 109.47035 * 270.00257 * 18 2 1 20 20 C 1.86296 * 109.46900 * 30.00372 * 18 2 1 21 21 C 1.86295 * 109.46987 * 149.99964 * 18 2 1 22 22 H 1.07997 * 120.00093 * 179.97438 * 1 2 3 23 23 H 1.08006 * 120.00003 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47408 * 90.00117 * 5 4 3 25 25 H 0.96698 * 114.00015 * 180.02562 * 6 5 4 26 26 H 1.08002 * 120.30824 * 0.05202 * 13 12 11 27 27 H 1.07991 * 120.15484 * 180.27057 * 14 13 12 28 28 H 1.08003 * 119.88109 * 180.02562 * 15 14 13 29 29 H 1.08003 * 119.69573 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.47170 * 60.00263 * 19 18 2 31 31 H 1.09003 * 109.46800 * 180.02562 * 19 18 2 32 32 H 1.08997 * 109.47228 * 299.99893 * 19 18 2 33 33 H 1.09001 * 109.47552 * 59.99612 * 20 18 2 34 34 H 1.08994 * 109.47562 * 179.97438 * 20 18 2 35 35 H 1.09009 * 109.47156 * 300.00013 * 20 18 2 36 36 H 1.09004 * 109.46833 * 60.00621 * 21 18 2 37 37 H 1.09003 * 109.47124 * 180.02562 * 21 18 2 38 38 H 1.08997 * 109.47819 * 300.00449 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3308 0.0000 0.0000 3 6 2.0657 1.2729 0.0000 4 6 2.1500 2.1757 -1.0388 5 6 1.4985 2.0302 -2.3898 6 8 1.3883 0.6440 -2.7188 7 14 2.5350 2.8930 -3.6752 8 1 3.8887 2.2834 -3.7102 9 1 1.8928 2.7502 -5.0065 10 1 2.6496 4.3336 -3.3333 11 7 2.9046 3.1963 -0.6438 12 6 3.3125 2.9935 0.6037 13 6 4.1185 3.7603 1.4674 14 6 4.3806 3.2994 2.7211 15 6 3.8452 2.0695 3.1360 16 6 3.0732 1.3463 2.2966 17 7 2.8038 1.7976 1.0385 18 14 2.2649 -1.6177 0.0007 19 6 2.5753 -2.1547 1.7574 20 6 1.2581 -2.9164 -0.8770 21 6 3.8927 -1.3953 -0.8776 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9354 -0.0004 24 1 0.5049 2.4777 -2.3642 25 1 0.9773 0.4751 -3.5777 26 1 4.5245 4.7054 1.1382 27 1 4.9935 3.8792 3.3952 28 1 4.0509 1.7011 4.1302 29 1 2.6655 0.4015 2.6248 30 1 1.6229 -2.2849 2.2712 31 1 3.1208 -3.0985 1.7577 32 1 3.1644 -1.3949 2.2709 33 1 1.0764 -2.6022 -1.9048 34 1 1.8032 -3.8602 -0.8771 35 1 0.3056 -3.0465 -0.3631 36 1 4.4818 -0.6354 -0.3640 37 1 4.4375 -2.3394 -0.8776 38 1 3.7111 -1.0810 -1.9054 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_13286520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:59:32 Heat of formation + Delta-G solvation = 32.189360 kcal Electronic energy + Delta-G solvation = -20009.988136 eV Core-core repulsion = 17170.627816 eV Total energy + Delta-G solvation = -2839.360320 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.60097 -38.73078 -37.30156 -35.20800 -33.65259 -31.49864 -29.66403 -29.25409 -28.48699 -28.27556 -27.21801 -24.32869 -23.65274 -21.86024 -20.48407 -18.64875 -17.91955 -17.66723 -16.83911 -16.70319 -15.98562 -15.79985 -15.57543 -15.02407 -14.53475 -14.46925 -14.16140 -13.95545 -13.87080 -13.47381 -13.34830 -13.22058 -13.11732 -13.07337 -12.80810 -12.70709 -12.45544 -11.99873 -11.89571 -11.78166 -11.44051 -11.14676 -10.84014 -10.77798 -10.51501 -9.98596 -9.43873 -8.43051 -0.17822 0.27351 0.95603 1.25615 1.59964 1.68547 1.76008 1.78502 1.88806 1.99385 2.20470 2.27891 2.62223 2.67175 2.95176 3.49264 3.72237 3.79647 3.93593 4.12412 4.21877 4.41198 4.53077 4.61766 4.64786 4.68560 4.73882 4.74823 4.82908 4.86737 4.90521 4.96808 5.12849 5.23963 5.31533 5.38477 5.52986 5.55542 5.64726 5.68832 5.80173 6.21549 6.65602 6.97712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.320 4.320 3 C 0.015 3.985 4 C 0.069 3.931 5 C -0.036 4.036 6 O -0.540 6.540 7 Si 0.968 3.032 8 H -0.254 1.254 9 H -0.262 1.262 10 H -0.244 1.244 11 N -0.488 5.488 12 C 0.221 3.779 13 C -0.077 4.077 14 C -0.105 4.105 15 C -0.141 4.141 16 C 0.051 3.949 17 N -0.355 5.355 18 Si 1.045 2.955 19 C -0.454 4.454 20 C -0.441 4.441 21 C -0.441 4.441 22 H 0.108 0.892 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.382 0.618 26 H 0.151 0.849 27 H 0.143 0.857 28 H 0.151 0.849 29 H 0.164 0.836 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 -2.337 2.244 3.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.363 4.363 3 C -0.098 4.098 4 C -0.064 4.064 5 C -0.147 4.147 6 O -0.345 6.345 7 Si 0.789 3.211 8 H -0.177 1.177 9 H -0.187 1.187 10 H -0.167 1.167 11 N -0.209 5.209 12 C -0.021 4.021 13 C -0.097 4.097 14 C -0.128 4.128 15 C -0.162 4.162 16 C -0.071 4.071 17 N -0.026 5.026 18 Si 1.237 2.763 19 C -0.561 4.561 20 C -0.550 4.550 21 C -0.549 4.549 22 H 0.126 0.874 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.229 0.771 26 H 0.169 0.831 27 H 0.161 0.839 28 H 0.169 0.831 29 H 0.181 0.819 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.331 -1.273 1.732 2.175 hybrid contribution -0.739 -0.612 0.416 1.046 sum -1.070 -1.885 2.148 3.052 Atomic orbital electron populations 1.24333 0.95155 1.01649 0.93399 1.26905 0.99807 1.04599 1.04969 1.19701 1.04282 0.98527 0.87268 1.20288 1.00149 0.91263 0.94715 1.23722 1.04159 0.88740 0.98110 1.86425 1.84868 1.21654 1.41523 0.85373 0.79693 0.80827 0.75160 1.17694 1.18678 1.16687 1.70105 1.16125 1.25974 1.08682 1.20662 1.02068 0.87055 0.92282 1.20314 0.97261 0.99981 0.92146 1.21063 0.99943 0.96062 0.95773 1.20878 0.99045 0.95761 1.00501 1.21742 1.00958 1.01129 0.83247 1.42815 1.32787 1.16854 1.10148 0.78433 0.66851 0.63850 0.67197 1.26271 1.04902 1.05927 1.18988 1.26043 1.08736 1.11623 1.08552 1.26026 1.16136 1.03909 1.08850 0.87355 0.89068 0.90269 0.77070 0.83118 0.83896 0.83095 0.81874 0.90970 0.90677 0.91618 0.90508 0.91127 0.91318 0.92133 0.91494 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.02 13.51 28.94 0.39 0.41 16 2 C -0.32 -0.25 2.86 -37.84 -0.11 -0.36 16 3 C 0.02 0.05 5.80 -81.78 -0.47 -0.42 16 4 C 0.07 0.31 6.15 -82.25 -0.51 -0.20 16 5 C -0.04 -0.06 3.01 36.00 0.11 0.05 16 6 O -0.54 0.08 11.01 -35.23 -0.39 -0.31 16 7 Si 0.97 2.18 27.56 -169.99 -4.69 -2.50 16 8 H -0.25 -1.11 7.11 56.52 0.40 -0.71 16 9 H -0.26 -0.30 7.11 56.52 0.40 0.10 16 10 H -0.24 -1.00 7.11 56.52 0.40 -0.60 16 11 N -0.49 -2.90 9.93 -8.47 -0.08 -2.98 16 12 C 0.22 0.99 7.79 -155.90 -1.21 -0.23 16 13 C -0.08 -0.13 10.10 -39.36 -0.40 -0.52 16 14 C -0.10 0.06 10.07 -39.53 -0.40 -0.34 16 15 C -0.14 0.14 9.99 -39.90 -0.40 -0.26 16 16 C 0.05 0.03 10.83 -16.68 -0.18 -0.15 16 17 N -0.35 -1.12 2.96 -58.75 -0.17 -1.30 16 18 Si 1.05 -1.02 12.45 -169.99 -2.12 -3.14 16 19 C -0.45 0.64 8.51 101.05 0.86 1.50 16 20 C -0.44 0.54 8.49 101.05 0.86 1.40 16 21 C -0.44 -0.52 8.65 101.05 0.87 0.36 16 22 H 0.11 -0.24 7.27 -52.49 -0.38 -0.62 16 23 H 0.09 0.04 8.05 -52.48 -0.42 -0.38 16 24 H 0.08 -0.01 7.96 -51.93 -0.41 -0.42 16 25 H 0.38 -1.75 8.74 45.56 0.40 -1.35 16 26 H 0.15 0.01 8.06 -52.49 -0.42 -0.42 16 27 H 0.14 -0.46 8.06 -52.49 -0.42 -0.88 16 28 H 0.15 -0.58 8.06 -52.48 -0.42 -1.00 16 29 H 0.16 -0.28 6.08 -52.48 -0.32 -0.59 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 32 H 0.06 -0.11 6.14 -51.93 -0.32 -0.42 16 33 H 0.08 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.12 7.64 -51.92 -0.40 -0.52 16 36 H 0.06 0.15 7.96 -51.93 -0.41 -0.26 16 37 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 38 H 0.08 0.16 7.96 -51.93 -0.41 -0.26 16 LS Contribution 322.80 15.07 4.86 4.86 Total: 0.00 -6.98 322.80 -7.98 -14.96 By element: Atomic # 1 Polarization: -6.01 SS G_CDS: -4.81 Total: -10.82 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.59 Total: 1.24 kcal Atomic # 7 Polarization: -4.02 SS G_CDS: -0.26 Total: -4.28 kcal Atomic # 8 Polarization: 0.08 SS G_CDS: -0.39 Total: -0.31 kcal Atomic # 14 Polarization: 1.16 SS G_CDS: -6.80 Total: -5.64 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -6.98 -7.98 -14.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_13286520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.151 kcal (2) G-P(sol) polarization free energy of solvation -6.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds