Wall clock time and date at job start Mon Mar 8 2021 10:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33085 * 1 3 3 C 1.46976 * 119.99821 * 2 1 4 4 C 1.37887 * 126.69834 * 290.01309 * 3 2 1 5 5 C 1.50691 * 125.85971 * 359.97438 * 4 3 2 6 6 O 1.42904 * 109.47541 * 329.99806 * 5 4 3 7 7 Si 1.86300 * 109.47146 * 210.00007 * 5 4 3 8 8 H 1.48501 * 109.47219 * 60.00014 * 7 5 4 9 9 H 1.48500 * 109.47604 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47122 * 300.00236 * 7 5 4 11 11 N 1.32938 * 108.27457 * 179.97438 * 4 3 2 12 12 C 1.32809 * 109.64297 * 0.02562 * 11 4 3 13 13 C 1.40842 * 131.96299 * 179.97438 * 12 11 4 14 14 C 1.36120 * 119.38110 * 180.02562 * 13 12 11 15 15 C 1.40405 * 119.69548 * 359.97438 * 14 13 12 16 16 C 1.35041 * 120.22583 * 359.97438 * 15 14 13 17 17 N 1.36353 * 120.61267 * 0.02562 * 16 15 14 18 18 Si 1.86802 * 120.00157 * 179.97438 * 2 1 3 19 19 C 1.86294 * 109.47035 * 270.00257 * 18 2 1 20 20 C 1.86296 * 109.46900 * 30.00372 * 18 2 1 21 21 C 1.86295 * 109.46987 * 149.99964 * 18 2 1 22 22 H 1.07997 * 120.00093 * 179.97438 * 1 2 3 23 23 H 1.08006 * 120.00003 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47408 * 90.00117 * 5 4 3 25 25 H 0.96698 * 114.00015 * 180.02562 * 6 5 4 26 26 H 1.08002 * 120.30824 * 0.05202 * 13 12 11 27 27 H 1.07991 * 120.15484 * 180.27057 * 14 13 12 28 28 H 1.08003 * 119.88109 * 180.02562 * 15 14 13 29 29 H 1.08003 * 119.69573 * 180.02562 * 16 15 14 30 30 H 1.09001 * 109.47170 * 60.00263 * 19 18 2 31 31 H 1.09003 * 109.46800 * 180.02562 * 19 18 2 32 32 H 1.08997 * 109.47228 * 299.99893 * 19 18 2 33 33 H 1.09001 * 109.47552 * 59.99612 * 20 18 2 34 34 H 1.08994 * 109.47562 * 179.97438 * 20 18 2 35 35 H 1.09009 * 109.47156 * 300.00013 * 20 18 2 36 36 H 1.09004 * 109.46833 * 60.00621 * 21 18 2 37 37 H 1.09003 * 109.47124 * 180.02562 * 21 18 2 38 38 H 1.08997 * 109.47819 * 300.00449 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3308 0.0000 0.0000 3 6 2.0657 1.2729 0.0000 4 6 2.1500 2.1757 -1.0388 5 6 1.4985 2.0302 -2.3898 6 8 1.3883 0.6440 -2.7188 7 14 2.5350 2.8930 -3.6752 8 1 3.8887 2.2834 -3.7102 9 1 1.8928 2.7502 -5.0065 10 1 2.6496 4.3336 -3.3333 11 7 2.9046 3.1963 -0.6438 12 6 3.3125 2.9935 0.6037 13 6 4.1185 3.7603 1.4674 14 6 4.3806 3.2994 2.7211 15 6 3.8452 2.0695 3.1360 16 6 3.0732 1.3463 2.2966 17 7 2.8038 1.7976 1.0385 18 14 2.2649 -1.6177 0.0007 19 6 2.5753 -2.1547 1.7574 20 6 1.2581 -2.9164 -0.8770 21 6 3.8927 -1.3953 -0.8776 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9354 -0.0004 24 1 0.5049 2.4777 -2.3642 25 1 0.9773 0.4751 -3.5777 26 1 4.5245 4.7054 1.1382 27 1 4.9935 3.8792 3.3952 28 1 4.0509 1.7011 4.1302 29 1 2.6655 0.4015 2.6248 30 1 1.6229 -2.2849 2.2712 31 1 3.1208 -3.0985 1.7577 32 1 3.1644 -1.3949 2.2709 33 1 1.0764 -2.6022 -1.9048 34 1 1.8032 -3.8602 -0.8771 35 1 0.3056 -3.0465 -0.3631 36 1 4.4818 -0.6354 -0.3640 37 1 4.4375 -2.3394 -0.8776 38 1 3.7111 -1.0810 -1.9054 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_13286520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:59:32 Heat of formation + Delta-G solvation = 39.058318 kcal Electronic energy + Delta-G solvation = -20009.690275 eV Core-core repulsion = 17170.627816 eV Total energy + Delta-G solvation = -2839.062459 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.71183 -38.76931 -37.31898 -35.27978 -33.66514 -31.54296 -29.62066 -29.30205 -28.35514 -28.27545 -27.27705 -24.34970 -23.73955 -21.96854 -20.51773 -18.69518 -17.96703 -17.70236 -16.95326 -16.68365 -16.10851 -15.78972 -15.63763 -15.08427 -14.60713 -14.51131 -14.09542 -13.91649 -13.79663 -13.35336 -13.29540 -13.24309 -13.03678 -12.99584 -12.89523 -12.75638 -12.52665 -12.19042 -12.03852 -11.97166 -11.52243 -11.12585 -10.82841 -10.79162 -10.54674 -9.99086 -9.53818 -8.53177 -0.20863 0.20790 0.97936 1.08972 1.38984 1.50298 1.64722 1.71149 1.93851 1.99484 2.06896 2.29138 2.53927 2.71911 2.91382 3.47167 3.72759 3.84156 3.96746 4.16990 4.18601 4.39804 4.47413 4.69213 4.71492 4.76936 4.78828 4.82644 4.84265 4.91647 4.95943 4.99917 5.11703 5.24423 5.34226 5.49166 5.49937 5.59987 5.62015 5.71660 5.80863 6.16253 6.79748 6.90426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.337 4.337 3 C 0.008 3.992 4 C 0.036 3.964 5 C -0.025 4.025 6 O -0.543 6.543 7 Si 0.992 3.008 8 H -0.292 1.292 9 H -0.237 1.237 10 H -0.278 1.278 11 N -0.531 5.531 12 C 0.196 3.804 13 C -0.107 4.107 14 C -0.089 4.089 15 C -0.136 4.136 16 C 0.033 3.967 17 N -0.360 5.360 18 Si 1.091 2.909 19 C -0.457 4.457 20 C -0.443 4.443 21 C -0.460 4.460 22 H 0.134 0.866 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.401 0.599 26 H 0.155 0.845 27 H 0.174 0.826 28 H 0.187 0.813 29 H 0.185 0.815 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -3.966 3.803 5.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.378 4.378 3 C -0.105 4.105 4 C -0.096 4.096 5 C -0.137 4.137 6 O -0.352 6.352 7 Si 0.818 3.182 8 H -0.218 1.218 9 H -0.160 1.160 10 H -0.203 1.203 11 N -0.253 5.253 12 C -0.046 4.046 13 C -0.127 4.127 14 C -0.112 4.112 15 C -0.156 4.156 16 C -0.088 4.088 17 N -0.031 5.031 18 Si 1.279 2.721 19 C -0.565 4.565 20 C -0.552 4.552 21 C -0.565 4.565 22 H 0.152 0.848 23 H 0.099 0.901 24 H 0.114 0.886 25 H 0.252 0.748 26 H 0.173 0.827 27 H 0.191 0.809 28 H 0.204 0.796 29 H 0.202 0.798 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.341 -2.894 3.239 4.546 hybrid contribution -0.319 -0.065 -0.013 0.326 sum -1.660 -2.959 3.226 4.681 Atomic orbital electron populations 1.24500 0.94777 1.02342 0.92157 1.27287 1.00312 1.04199 1.06050 1.20110 1.04242 0.99053 0.87055 1.20801 1.00904 0.91642 0.96280 1.23535 1.04299 0.89483 0.96401 1.86390 1.85237 1.20439 1.43116 0.85109 0.78060 0.78260 0.76816 1.21824 1.16026 1.20337 1.70045 1.17759 1.27482 1.10028 1.21120 1.02820 0.88136 0.92489 1.20570 0.98375 1.00632 0.93150 1.21501 0.98636 0.96131 0.94959 1.21394 0.97513 0.95092 1.01612 1.22325 1.01602 1.02322 0.82549 1.42990 1.32653 1.16508 1.10982 0.77782 0.64356 0.62759 0.67156 1.26266 1.05676 1.06160 1.18373 1.26043 1.09292 1.11395 1.08518 1.26341 1.18491 1.03343 1.08341 0.84814 0.90147 0.88563 0.74785 0.82716 0.80869 0.79550 0.79826 0.89773 0.90289 0.91407 0.90665 0.90811 0.90033 0.94151 0.90974 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.12 13.51 66.66 0.90 1.02 16 2 C -0.34 -0.53 2.86 23.41 0.07 -0.47 16 3 C 0.01 0.07 5.80 40.42 0.23 0.30 16 4 C 0.04 0.41 6.15 42.31 0.26 0.67 16 5 C -0.03 -0.12 3.01 71.23 0.21 0.09 16 6 O -0.54 -0.17 11.01 -148.98 -1.64 -1.81 16 7 Si 0.99 6.90 27.56 68.60 1.89 8.79 16 8 H -0.29 -3.79 7.11 99.48 0.71 -3.08 16 9 H -0.24 -0.57 7.11 99.48 0.71 0.13 16 10 H -0.28 -3.41 7.11 99.48 0.71 -2.70 16 11 N -0.53 -8.12 9.93 -180.72 -1.80 -9.92 16 12 C 0.20 2.24 7.79 134.02 1.04 3.29 16 13 C -0.11 -0.53 10.10 22.41 0.23 -0.30 16 14 C -0.09 0.15 10.07 22.30 0.22 0.38 16 15 C -0.14 0.45 9.99 22.06 0.22 0.67 16 16 C 0.03 0.03 10.83 83.25 0.90 0.93 16 17 N -0.36 -2.78 2.96 -339.78 -1.01 -3.78 16 18 Si 1.09 -2.68 12.45 68.60 0.85 -1.82 16 19 C -0.46 2.02 8.51 113.37 0.96 2.99 16 20 C -0.44 1.79 8.49 113.37 0.96 2.75 16 21 C -0.46 -1.78 8.65 113.37 0.98 -0.80 16 22 H 0.13 -0.89 7.27 -2.91 -0.02 -0.91 16 23 H 0.08 0.08 8.05 -2.91 -0.02 0.05 16 24 H 0.10 0.06 7.96 -2.38 -0.02 0.04 16 25 H 0.40 -3.80 8.74 -74.06 -0.65 -4.45 16 26 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 27 H 0.17 -1.44 8.06 -2.92 -0.02 -1.47 16 28 H 0.19 -2.02 8.06 -2.91 -0.02 -2.04 16 29 H 0.18 -0.83 6.08 -2.91 -0.02 -0.85 16 30 H 0.08 -0.53 7.96 -2.39 -0.02 -0.55 16 31 H 0.08 -0.38 7.96 -2.39 -0.02 -0.39 16 32 H 0.07 -0.32 6.14 -2.39 -0.01 -0.33 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 35 H 0.08 -0.51 7.64 -2.38 -0.02 -0.53 16 36 H 0.04 0.30 7.96 -2.38 -0.02 0.28 16 37 H 0.07 0.13 7.96 -2.39 -0.02 0.11 16 38 H 0.06 0.40 7.96 -2.39 -0.02 0.38 16 Total: 0.00 -20.21 322.80 6.66 -13.55 By element: Atomic # 1 Polarization: -17.69 SS G_CDS: 1.16 Total: -16.53 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 7.20 Total: 11.52 kcal Atomic # 7 Polarization: -10.90 SS G_CDS: -2.80 Total: -13.70 kcal Atomic # 8 Polarization: -0.17 SS G_CDS: -1.64 Total: -1.81 kcal Atomic # 14 Polarization: 4.22 SS G_CDS: 2.75 Total: 6.97 kcal Total: -20.21 6.66 -13.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_13286520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.609 kcal (2) G-P(sol) polarization free energy of solvation -20.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds