Wall clock time and date at job start Mon Mar 8 2021 11:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32559 * 1 3 3 C 1.47827 * 119.99878 * 2 1 4 4 C 1.39834 * 120.52842 * 226.63081 * 3 2 1 5 5 C 1.38886 * 118.24469 * 180.24120 * 4 3 2 6 6 O 1.35922 * 120.40319 * 179.78936 * 5 4 3 7 7 C 1.38805 * 119.19623 * 359.50809 * 5 4 3 8 8 C 1.50696 * 119.50430 * 180.27430 * 7 5 4 9 9 O 1.42903 * 109.47345 * 330.00278 * 8 7 5 10 10 Si 1.86305 * 109.47312 * 210.00423 * 8 7 5 11 11 H 1.48497 * 109.47289 * 180.02562 * 10 8 7 12 12 H 1.48504 * 109.46744 * 299.99876 * 10 8 7 13 13 H 1.48504 * 109.46936 * 59.99893 * 10 8 7 14 14 N 1.31882 * 120.99077 * 0.25706 * 7 5 4 15 15 C 1.31679 * 121.93636 * 359.97438 * 14 7 5 16 16 Si 1.86804 * 120.00109 * 179.97438 * 2 1 3 17 17 C 1.86298 * 109.46818 * 181.75873 * 16 2 1 18 18 C 1.86292 * 109.47308 * 301.75963 * 16 2 1 19 19 C 1.86301 * 109.46982 * 61.76171 * 16 2 1 20 20 H 1.08003 * 119.99790 * 180.02562 * 1 2 3 21 21 H 1.08004 * 120.00444 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.88023 * 0.02841 * 4 3 2 23 23 H 0.96701 * 113.99668 * 269.72638 * 6 5 4 24 24 H 1.08998 * 109.47266 * 90.00005 * 8 7 5 25 25 H 0.96694 * 114.00295 * 180.02562 * 9 8 7 26 26 H 1.07995 * 119.65575 * 179.97438 * 15 14 7 27 27 H 1.08993 * 109.47312 * 53.71848 * 17 16 2 28 28 H 1.09004 * 109.46894 * 173.72130 * 17 16 2 29 29 H 1.09005 * 109.47133 * 293.71286 * 17 16 2 30 30 H 1.08999 * 109.47240 * 59.99668 * 18 16 2 31 31 H 1.09002 * 109.47492 * 179.97438 * 18 16 2 32 32 H 1.09004 * 109.47612 * 300.00016 * 18 16 2 33 33 H 1.09001 * 109.47182 * 59.99400 * 19 16 2 34 34 H 1.08990 * 109.47302 * 179.97438 * 19 16 2 35 35 H 1.09004 * 109.47026 * 300.00128 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 3.1362 1.4818 -0.8756 5 6 3.8003 2.7008 -0.8318 6 8 4.8505 2.9421 -1.6603 7 6 3.3750 3.6719 0.0641 8 6 4.0867 4.9993 0.1131 9 8 5.4568 4.8189 -0.2507 10 14 3.9888 5.6932 1.8394 11 1 4.6896 7.0015 1.8875 12 1 2.5649 5.8806 2.2174 13 1 4.6331 4.7506 2.7890 14 7 2.3571 3.4504 0.8729 15 6 1.7006 2.3089 0.8700 16 14 2.2596 -1.6177 0.0007 17 6 4.0905 -1.2776 0.0545 18 6 1.7696 -2.6172 1.4945 19 6 1.8504 -2.5717 -1.5463 20 1 -0.5400 -0.9354 0.0004 21 1 -0.5401 0.9353 -0.0004 22 1 3.4414 0.7088 -1.5653 23 1 5.7085 2.6923 -1.2908 24 1 3.6138 5.6911 -0.5839 25 1 5.9771 5.6339 -0.2404 26 1 0.8726 2.1669 1.5486 27 1 4.3143 -0.6258 0.8989 28 1 4.6315 -2.2172 0.1673 29 1 4.3970 -0.7909 -0.8715 30 1 0.6983 -2.8161 1.4631 31 1 2.3142 -3.5613 1.4947 32 1 2.0090 -2.0590 2.3997 33 1 2.1371 -1.9870 -2.4203 34 1 2.3957 -3.5154 -1.5461 35 1 0.7791 -2.7707 -1.5778 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_13453832.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:05:48 Heat of formation + Delta-G solvation = -62.886283 kcal Electronic energy + Delta-G solvation = -16868.819648 eV Core-core repulsion = 14184.070158 eV Total energy + Delta-G solvation = -2684.749490 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.62243 -38.33335 -37.54272 -35.52937 -32.22869 -31.25508 -29.45402 -28.33311 -28.28925 -27.00247 -24.60177 -23.33980 -20.92626 -19.12756 -18.28985 -17.88253 -17.35907 -16.45144 -16.20838 -15.71976 -15.09459 -14.67874 -14.59217 -14.10107 -14.05032 -13.91407 -13.73173 -13.62598 -13.19748 -13.13806 -13.06085 -12.94937 -12.83338 -12.41727 -12.13911 -11.92187 -11.58014 -11.19580 -10.81497 -10.79002 -10.48322 -10.20538 -10.08865 -9.32033 -0.24415 0.10815 1.08531 1.23494 1.47181 1.55272 1.80394 1.97250 2.01925 2.20156 2.57491 2.70048 2.86900 3.25917 3.64500 3.81209 3.89763 4.00065 4.28031 4.53615 4.58815 4.78625 4.79621 4.81488 4.85296 4.87499 4.88494 4.89112 4.95996 5.06705 5.30552 5.53008 5.56910 5.65414 5.66908 5.77443 6.70752 6.79839 6.87585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.391 4.391 3 C -0.062 4.062 4 C -0.112 4.112 5 C 0.086 3.914 6 O -0.484 6.484 7 C 0.072 3.928 8 C -0.063 4.063 9 O -0.552 6.552 10 Si 1.011 2.989 11 H -0.251 1.251 12 H -0.269 1.269 13 H -0.286 1.286 14 N -0.489 5.489 15 C 0.081 3.919 16 Si 1.111 2.889 17 C -0.465 4.465 18 C -0.460 4.460 19 C -0.459 4.459 20 H 0.129 0.871 21 H 0.093 0.907 22 H 0.161 0.839 23 H 0.407 0.593 24 H 0.094 0.906 25 H 0.403 0.597 26 H 0.175 0.825 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 -2.493 -0.365 2.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.431 4.431 3 C -0.064 4.064 4 C -0.138 4.138 5 C 0.039 3.961 6 O -0.295 6.295 7 C -0.065 4.065 8 C -0.174 4.174 9 O -0.360 6.360 10 Si 0.835 3.165 11 H -0.175 1.175 12 H -0.194 1.194 13 H -0.212 1.212 14 N -0.200 5.200 15 C -0.077 4.077 16 Si 1.299 2.701 17 C -0.571 4.571 18 C -0.567 4.567 19 C -0.566 4.566 20 H 0.147 0.853 21 H 0.111 0.889 22 H 0.178 0.822 23 H 0.267 0.733 24 H 0.111 0.889 25 H 0.254 0.746 26 H 0.192 0.808 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.734 -1.805 0.574 2.031 hybrid contribution 0.688 -0.170 -0.591 0.923 sum -0.046 -1.975 -0.017 1.975 Atomic orbital electron populations 1.24542 0.95191 1.03134 0.92216 1.28241 1.01503 1.07288 1.06074 1.20103 0.95432 0.95550 0.95319 1.22378 0.95680 0.96826 0.98896 1.19119 0.92616 0.92767 0.91571 1.84708 1.16920 1.86750 1.41151 1.21285 0.94871 0.97052 0.93341 1.24370 0.85076 0.95813 1.12133 1.86248 1.18544 1.38935 1.92317 0.84754 0.79842 0.77851 0.74013 1.17507 1.19394 1.21177 1.66968 1.07212 1.23774 1.22087 1.23239 0.98715 0.87236 0.98503 0.77405 0.64364 0.61711 0.66661 1.26437 1.21388 1.05088 1.04200 1.26248 1.06154 1.09233 1.15022 1.26243 1.05744 1.08882 1.15698 0.85323 0.88867 0.82185 0.73333 0.88870 0.74562 0.80811 0.92150 0.90623 0.90982 0.90584 0.90753 0.91547 0.91301 0.90686 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.48 13.32 66.67 0.89 1.36 16 2 C -0.39 0.96 4.43 23.66 0.10 1.06 16 3 C -0.06 -0.15 5.25 -20.04 -0.11 -0.25 16 4 C -0.11 -0.34 8.29 22.81 0.19 -0.15 16 5 C 0.09 0.52 6.59 22.56 0.15 0.66 16 6 O -0.48 -2.03 11.54 -70.75 -0.82 -2.84 16 7 C 0.07 0.54 6.12 42.69 0.26 0.80 16 8 C -0.06 -0.18 2.91 71.23 0.21 0.02 16 9 O -0.55 0.24 10.27 -127.06 -1.31 -1.06 16 10 Si 1.01 3.68 27.16 68.60 1.86 5.55 16 11 H -0.25 -0.26 7.11 99.48 0.71 0.45 16 12 H -0.27 -2.09 7.11 99.48 0.71 -1.38 16 13 H -0.29 -2.36 7.11 99.48 0.71 -1.65 16 14 N -0.49 -4.23 8.34 -182.50 -1.52 -5.75 16 15 C 0.08 0.39 10.51 85.03 0.89 1.28 16 16 Si 1.11 -6.63 11.71 68.60 0.80 -5.83 16 17 C -0.46 1.49 7.71 113.37 0.87 2.37 16 18 C -0.46 2.07 8.65 113.37 0.98 3.05 16 19 C -0.46 2.27 8.65 113.37 0.98 3.25 16 20 H 0.13 -1.10 7.73 -2.91 -0.02 -1.12 16 21 H 0.09 -0.32 7.85 -2.91 -0.02 -0.35 16 22 H 0.16 -0.17 6.05 -2.91 -0.02 -0.19 16 23 H 0.41 -0.89 8.54 -74.06 -0.63 -1.52 16 24 H 0.09 0.05 7.96 -2.39 -0.02 0.03 16 25 H 0.40 -3.74 8.74 -74.06 -0.65 -4.39 16 26 H 0.17 0.08 7.94 -2.91 -0.02 0.06 16 27 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 28 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 29 H 0.07 -0.26 6.25 -2.38 -0.01 -0.27 16 30 H 0.08 -0.42 7.96 -2.39 -0.02 -0.43 16 31 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 32 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 33 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 34 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 35 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 Total: 0.00 -14.38 297.54 5.02 -9.36 By element: Atomic # 1 Polarization: -13.45 SS G_CDS: 0.57 Total: -12.89 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 5.42 Total: 13.46 kcal Atomic # 7 Polarization: -4.23 SS G_CDS: -1.52 Total: -5.75 kcal Atomic # 8 Polarization: -1.78 SS G_CDS: -2.12 Total: -3.91 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: 2.67 Total: -0.28 kcal Total: -14.38 5.02 -9.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_13453832.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.524 kcal (2) G-P(sol) polarization free energy of solvation -14.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds