Wall clock time and date at job start Mon Mar 8 2021 11:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47819 * 120.00118 * 2 1 4 4 C 1.39528 * 120.11136 * 245.78009 * 3 2 1 5 5 C 1.38025 * 119.96623 * 179.76376 * 4 3 2 6 6 C 1.38236 * 120.20101 * 0.51237 * 5 4 3 7 7 C 1.38848 * 120.22555 * 359.74181 * 6 5 4 8 8 O 1.35909 * 119.98024 * 180.02562 * 7 6 5 9 9 C 1.42893 * 117.00231 * 359.97438 * 8 7 6 10 10 F 1.39902 * 109.47051 * 299.99465 * 9 8 7 11 11 F 1.39900 * 109.47396 * 59.99754 * 9 8 7 12 12 C 1.38462 * 120.03560 * 0.02562 * 7 6 5 13 13 C 1.50690 * 120.10256 * 180.02562 * 12 7 6 14 14 O 1.42903 * 109.47164 * 58.43833 * 13 12 7 15 15 Si 1.86299 * 109.47276 * 298.43672 * 13 12 7 16 16 H 1.48496 * 109.47090 * 66.12870 * 15 13 12 17 17 H 1.48497 * 109.47343 * 186.13252 * 15 13 12 18 18 H 1.48502 * 109.46668 * 306.12747 * 15 13 12 19 19 Si 1.86794 * 119.99753 * 179.97438 * 2 1 3 20 20 C 1.86305 * 109.47075 * 93.73359 * 19 2 1 21 21 C 1.86302 * 109.46968 * 213.73176 * 19 2 1 22 22 C 1.86296 * 109.47531 * 333.73178 * 19 2 1 23 23 H 1.08003 * 119.99835 * 175.26373 * 1 2 3 24 24 H 1.08002 * 120.00045 * 354.98611 * 1 2 3 25 25 H 1.08005 * 120.02049 * 0.02562 * 4 3 2 26 26 H 1.08005 * 119.90466 * 180.23210 * 5 4 3 27 27 H 1.08001 * 119.88146 * 179.71848 * 6 5 4 28 28 H 1.09002 * 109.47153 * 179.97438 * 9 8 7 29 29 H 1.09003 * 109.47290 * 178.43391 * 13 12 7 30 30 H 0.96697 * 114.00646 * 65.57956 * 14 13 12 31 31 H 1.08991 * 109.47249 * 59.99667 * 20 19 2 32 32 H 1.09002 * 109.46931 * 180.02562 * 20 19 2 33 33 H 1.08999 * 109.46972 * 299.99582 * 20 19 2 34 34 H 1.08998 * 109.47255 * 65.06903 * 21 19 2 35 35 H 1.09011 * 109.46959 * 185.06916 * 21 19 2 36 36 H 1.09000 * 109.47082 * 305.06716 * 21 19 2 37 37 H 1.08999 * 109.47186 * 60.00007 * 22 19 2 38 38 H 1.09002 * 109.47801 * 180.02562 * 22 19 2 39 39 H 1.09000 * 109.47125 * 300.00143 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 2.8436 1.6388 -1.1007 5 6 3.5286 2.8370 -1.0996 6 6 3.4543 3.6794 -0.0061 7 6 2.6859 3.3283 1.0958 8 8 2.6160 4.1605 2.1680 9 6 3.3586 5.3790 2.0930 10 9 4.7174 5.0878 1.9314 11 9 2.9101 6.1322 1.0027 12 6 1.9910 2.1307 1.1029 13 6 1.1562 1.7484 2.2978 14 8 0.1666 2.7531 2.5286 15 14 2.2508 1.5985 3.7978 16 1 2.8015 2.9334 4.1441 17 1 1.4568 1.0790 4.9401 18 1 3.3667 0.6635 3.5047 19 14 2.2596 -1.6177 0.0007 20 6 2.6691 -2.0991 -1.7518 21 6 3.8351 -1.4247 0.9760 22 6 1.2061 -2.9427 0.7786 23 1 -0.5400 -0.9322 -0.0772 24 1 -0.5400 0.9317 0.0817 25 1 2.9071 0.9810 -1.9551 26 1 4.1282 3.1153 -1.9537 27 1 3.9960 4.6137 -0.0088 28 1 3.2155 5.9488 3.0112 29 1 0.6666 0.7931 2.1083 30 1 -0.4912 2.8267 1.8238 31 1 3.2855 -1.3240 -2.2070 32 1 3.2137 -3.0434 -1.7514 33 1 1.7473 -2.2121 -2.3224 34 1 3.5941 -1.2317 2.0213 35 1 4.4229 -2.3398 0.9017 36 1 4.4103 -0.5899 0.5756 37 1 0.2843 -3.0557 0.2080 38 1 1.7512 -3.8867 0.7795 39 1 0.9665 -2.6611 1.8040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_14048408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:10:43 Heat of formation + Delta-G solvation = -179.041161 kcal Electronic energy + Delta-G solvation = -23876.910927 eV Core-core repulsion = 20158.104925 eV Total energy + Delta-G solvation = -3718.806003 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.106 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.31161 -48.29434 -41.31904 -38.80644 -37.39953 -34.87559 -32.07167 -30.53962 -29.57354 -28.46790 -28.37104 -27.28659 -26.59887 -23.88406 -22.66846 -20.97661 -19.56363 -18.91754 -18.88629 -18.11077 -17.31485 -16.93777 -16.33832 -15.81713 -15.68825 -15.41830 -15.14567 -14.92452 -14.69386 -14.60411 -14.34297 -14.25631 -14.12374 -14.00288 -13.87410 -13.67835 -13.43999 -13.33188 -13.21424 -13.14472 -12.88901 -12.73836 -12.29404 -12.04036 -11.80700 -11.55757 -11.20753 -11.06211 -10.93839 -10.89486 -10.25612 -9.48177 -9.28445 0.11217 0.30981 0.91345 1.27685 1.49867 1.63998 1.67388 1.78779 1.82426 2.02567 2.14796 2.47904 2.51063 2.74074 3.33093 3.63271 3.66439 3.70741 3.91064 4.03819 4.12806 4.24325 4.49375 4.55660 4.60783 4.64437 4.69768 4.70372 4.71161 4.76368 4.77578 4.86210 5.13398 5.22768 5.34654 5.41463 5.44748 5.48462 5.55239 5.58983 5.69489 6.08172 6.64623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.375 4.375 3 C 0.012 3.988 4 C -0.144 4.144 5 C -0.072 4.072 6 C -0.199 4.199 7 C 0.125 3.875 8 O -0.303 6.303 9 C 0.407 3.593 10 F -0.199 7.199 11 F -0.198 7.198 12 C -0.141 4.141 13 C -0.082 4.082 14 O -0.531 6.531 15 Si 0.990 3.010 16 H -0.236 1.236 17 H -0.254 1.254 18 H -0.246 1.246 19 Si 1.044 2.956 20 C -0.445 4.445 21 C -0.450 4.450 22 C -0.449 4.449 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.181 0.819 29 H 0.081 0.919 30 H 0.363 0.637 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 -2.059 -0.816 2.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.416 4.416 3 C 0.012 3.988 4 C -0.162 4.162 5 C -0.090 4.090 6 C -0.218 4.218 7 C 0.082 3.918 8 O -0.221 6.221 9 C 0.317 3.683 10 F -0.181 7.181 11 F -0.180 7.180 12 C -0.141 4.141 13 C -0.190 4.190 14 O -0.335 6.335 15 Si 0.808 3.192 16 H -0.159 1.159 17 H -0.177 1.177 18 H -0.170 1.170 19 Si 1.236 2.764 20 C -0.553 4.553 21 C -0.558 4.558 22 C -0.557 4.557 23 H 0.128 0.872 24 H 0.112 0.888 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.198 0.802 29 H 0.099 0.901 30 H 0.210 0.790 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.132 -1.978 0.594 2.070 hybrid contribution -0.471 0.453 -1.389 1.535 sum -0.339 -1.525 -0.795 1.753 Atomic orbital electron populations 1.24301 0.95251 1.02139 0.94043 1.27965 1.01086 1.07819 1.04696 1.18624 0.95436 0.92803 0.91931 1.21197 0.98810 0.97684 0.98501 1.20937 0.97441 0.93310 0.97348 1.21579 1.03059 1.02601 0.94527 1.18528 0.96214 0.90456 0.86600 1.86859 1.66852 1.29403 1.38943 1.23436 0.73274 0.81722 0.89864 1.93100 1.34981 1.93522 1.96498 1.93101 1.88773 1.76615 1.59492 1.19666 1.02841 0.93466 0.98177 1.25134 0.95120 0.93948 1.04762 1.86754 1.41112 1.57676 1.48005 0.84786 0.77514 0.81855 0.74998 1.15915 1.17734 1.16985 0.78458 0.66498 0.63276 0.68189 1.26087 1.05367 1.05609 1.18240 1.26130 1.15789 1.04860 1.09012 1.26136 1.09585 1.12483 1.07463 0.87241 0.88759 0.85080 0.85144 0.84805 0.80226 0.90081 0.79037 0.91052 0.90939 0.91075 0.91108 0.90896 0.90961 0.91029 0.90692 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.23 11.97 28.83 0.35 0.57 16 2 C -0.38 0.40 3.20 -37.57 -0.12 0.28 16 3 C 0.01 0.01 4.90 -105.04 -0.51 -0.50 16 4 C -0.14 -0.09 9.42 -39.18 -0.37 -0.45 16 5 C -0.07 -0.08 10.03 -39.66 -0.40 -0.48 16 6 C -0.20 -0.49 8.25 -39.36 -0.32 -0.81 16 7 C 0.13 0.37 5.90 -39.27 -0.23 0.14 16 8 O -0.30 -0.80 7.04 -26.95 -0.19 -0.99 16 9 C 0.41 0.12 5.98 101.05 0.60 0.72 16 10 F -0.20 -0.33 15.58 2.25 0.04 -0.30 16 11 F -0.20 -0.33 15.58 2.25 0.04 -0.30 16 12 C -0.14 -0.29 4.55 -104.08 -0.47 -0.76 16 13 C -0.08 -0.11 2.36 36.00 0.09 -0.03 16 14 O -0.53 -0.88 12.03 -42.73 -0.51 -1.40 16 15 Si 0.99 2.18 26.81 -169.99 -4.56 -2.37 16 16 H -0.24 -0.69 6.25 56.52 0.35 -0.34 16 17 H -0.25 -0.63 7.11 56.52 0.40 -0.23 16 18 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 19 Si 1.04 -2.51 12.16 -169.99 -2.07 -4.57 16 20 C -0.45 0.88 8.65 101.05 0.87 1.75 16 21 C -0.45 0.32 8.65 101.05 0.87 1.19 16 22 C -0.45 1.03 8.45 101.05 0.85 1.88 16 23 H 0.11 -0.39 7.22 -52.48 -0.38 -0.77 16 24 H 0.09 -0.17 8.05 -52.49 -0.42 -0.60 16 25 H 0.13 -0.17 7.87 -52.48 -0.41 -0.58 16 26 H 0.13 -0.12 8.06 -52.48 -0.42 -0.54 16 27 H 0.13 0.29 5.08 -52.49 -0.27 0.03 16 28 H 0.18 -0.71 8.14 -51.93 -0.42 -1.14 16 29 H 0.08 -0.03 5.24 -51.93 -0.27 -0.30 16 30 H 0.36 -0.45 9.11 45.56 0.42 -0.03 16 31 H 0.07 -0.14 7.77 -51.93 -0.40 -0.54 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 35 H 0.07 -0.09 7.96 -51.92 -0.41 -0.51 16 36 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 37 H 0.07 -0.20 7.63 -51.93 -0.40 -0.59 16 38 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 39 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 LS Contribution 331.88 15.07 5.00 5.00 Total: 0.00 -4.99 331.88 -5.77 -10.77 By element: Atomic # 1 Polarization: -4.62 SS G_CDS: -4.72 Total: -9.34 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 1.21 Total: 3.50 kcal Atomic # 8 Polarization: -1.68 SS G_CDS: -0.70 Total: -2.38 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 0.07 Total: -0.59 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: -6.63 Total: -6.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -4.99 -5.77 -10.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_14048408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.274 kcal (2) G-P(sol) polarization free energy of solvation -4.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds