Wall clock time and date at job start Mon Mar 8 2021 11:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47819 * 120.00118 * 2 1 4 4 C 1.39528 * 120.11136 * 245.78009 * 3 2 1 5 5 C 1.38025 * 119.96623 * 179.76376 * 4 3 2 6 6 C 1.38236 * 120.20101 * 0.51237 * 5 4 3 7 7 C 1.38848 * 120.22555 * 359.74181 * 6 5 4 8 8 O 1.35909 * 119.98024 * 180.02562 * 7 6 5 9 9 C 1.42893 * 117.00231 * 359.97438 * 8 7 6 10 10 F 1.39902 * 109.47051 * 299.99465 * 9 8 7 11 11 F 1.39900 * 109.47396 * 59.99754 * 9 8 7 12 12 C 1.38462 * 120.03560 * 0.02562 * 7 6 5 13 13 C 1.50690 * 120.10256 * 180.02562 * 12 7 6 14 14 O 1.42903 * 109.47164 * 58.43833 * 13 12 7 15 15 Si 1.86299 * 109.47276 * 298.43672 * 13 12 7 16 16 H 1.48496 * 109.47090 * 66.12870 * 15 13 12 17 17 H 1.48497 * 109.47343 * 186.13252 * 15 13 12 18 18 H 1.48502 * 109.46668 * 306.12747 * 15 13 12 19 19 Si 1.86794 * 119.99753 * 179.97438 * 2 1 3 20 20 C 1.86305 * 109.47075 * 93.73359 * 19 2 1 21 21 C 1.86302 * 109.46968 * 213.73176 * 19 2 1 22 22 C 1.86296 * 109.47531 * 333.73178 * 19 2 1 23 23 H 1.08003 * 119.99835 * 175.26373 * 1 2 3 24 24 H 1.08002 * 120.00045 * 354.98611 * 1 2 3 25 25 H 1.08005 * 120.02049 * 0.02562 * 4 3 2 26 26 H 1.08005 * 119.90466 * 180.23210 * 5 4 3 27 27 H 1.08001 * 119.88146 * 179.71848 * 6 5 4 28 28 H 1.09002 * 109.47153 * 179.97438 * 9 8 7 29 29 H 1.09003 * 109.47290 * 178.43391 * 13 12 7 30 30 H 0.96697 * 114.00646 * 65.57956 * 14 13 12 31 31 H 1.08991 * 109.47249 * 59.99667 * 20 19 2 32 32 H 1.09002 * 109.46931 * 180.02562 * 20 19 2 33 33 H 1.08999 * 109.46972 * 299.99582 * 20 19 2 34 34 H 1.08998 * 109.47255 * 65.06903 * 21 19 2 35 35 H 1.09011 * 109.46959 * 185.06916 * 21 19 2 36 36 H 1.09000 * 109.47082 * 305.06716 * 21 19 2 37 37 H 1.08999 * 109.47186 * 60.00007 * 22 19 2 38 38 H 1.09002 * 109.47801 * 180.02562 * 22 19 2 39 39 H 1.09000 * 109.47125 * 300.00143 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 2.8436 1.6388 -1.1007 5 6 3.5286 2.8370 -1.0996 6 6 3.4543 3.6794 -0.0061 7 6 2.6859 3.3283 1.0958 8 8 2.6160 4.1605 2.1680 9 6 3.3586 5.3790 2.0930 10 9 4.7174 5.0878 1.9314 11 9 2.9101 6.1322 1.0027 12 6 1.9910 2.1307 1.1029 13 6 1.1562 1.7484 2.2978 14 8 0.1666 2.7531 2.5286 15 14 2.2508 1.5985 3.7978 16 1 2.8015 2.9334 4.1441 17 1 1.4568 1.0790 4.9401 18 1 3.3667 0.6635 3.5047 19 14 2.2596 -1.6177 0.0007 20 6 2.6691 -2.0991 -1.7518 21 6 3.8351 -1.4247 0.9760 22 6 1.2061 -2.9427 0.7786 23 1 -0.5400 -0.9322 -0.0772 24 1 -0.5400 0.9317 0.0817 25 1 2.9071 0.9810 -1.9551 26 1 4.1282 3.1153 -1.9537 27 1 3.9960 4.6137 -0.0088 28 1 3.2155 5.9488 3.0112 29 1 0.6666 0.7931 2.1083 30 1 -0.4912 2.8267 1.8238 31 1 3.2855 -1.3240 -2.2070 32 1 3.2137 -3.0434 -1.7514 33 1 1.7473 -2.2121 -2.3224 34 1 3.5941 -1.2317 2.0213 35 1 4.4229 -2.3398 0.9017 36 1 4.4103 -0.5899 0.5756 37 1 0.2843 -3.0557 0.2080 38 1 1.7512 -3.8867 0.7795 39 1 0.9665 -2.6611 1.8040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_14048408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:10:42 Heat of formation + Delta-G solvation = -170.473110 kcal Electronic energy + Delta-G solvation = -23876.539389 eV Core-core repulsion = 20158.104925 eV Total energy + Delta-G solvation = -3718.434464 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.106 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.38001 -48.37536 -41.38113 -38.86448 -37.47647 -34.82572 -32.11897 -30.51958 -29.40919 -28.29629 -28.21508 -27.32022 -26.65047 -23.89214 -22.73332 -20.94885 -19.59905 -18.96455 -18.93643 -18.16290 -17.37942 -16.95382 -16.44672 -15.78392 -15.74396 -15.51415 -15.16640 -15.01392 -14.73657 -14.64229 -14.44748 -14.16537 -14.05014 -13.89343 -13.73125 -13.67299 -13.29478 -13.21031 -13.06651 -12.99895 -12.91786 -12.73689 -12.31740 -12.20520 -12.00365 -11.50415 -11.27496 -10.94214 -10.88997 -10.77757 -10.14547 -9.53148 -9.33736 0.06610 0.23114 1.05063 1.15164 1.36774 1.48595 1.70506 1.83044 1.97687 2.00445 2.21086 2.49657 2.57996 2.74816 3.42683 3.58824 3.62923 3.70685 3.90631 3.98811 4.10458 4.23999 4.44251 4.55311 4.77035 4.79759 4.81952 4.83817 4.88606 4.91077 4.92151 4.96536 5.13666 5.26649 5.32566 5.44034 5.57375 5.58179 5.67940 5.71156 5.77539 6.02390 6.70582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.393 4.393 3 C 0.013 3.987 4 C -0.150 4.150 5 C -0.078 4.078 6 C -0.218 4.218 7 C 0.108 3.892 8 O -0.316 6.316 9 C 0.401 3.599 10 F -0.210 7.210 11 F -0.208 7.208 12 C -0.154 4.154 13 C -0.074 4.074 14 O -0.544 6.544 15 Si 0.988 3.012 16 H -0.250 1.250 17 H -0.258 1.258 18 H -0.248 1.248 19 Si 1.097 2.903 20 C -0.455 4.455 21 C -0.471 4.471 22 C -0.456 4.456 23 H 0.131 0.869 24 H 0.093 0.907 25 H 0.151 0.849 26 H 0.147 0.853 27 H 0.129 0.871 28 H 0.222 0.778 29 H 0.099 0.901 30 H 0.375 0.625 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 -2.968 -1.432 3.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.432 4.432 3 C 0.013 3.987 4 C -0.168 4.168 5 C -0.096 4.096 6 C -0.236 4.236 7 C 0.064 3.936 8 O -0.234 6.234 9 C 0.311 3.689 10 F -0.192 7.192 11 F -0.190 7.190 12 C -0.155 4.155 13 C -0.184 4.184 14 O -0.350 6.350 15 Si 0.809 3.191 16 H -0.174 1.174 17 H -0.182 1.182 18 H -0.171 1.171 19 Si 1.285 2.715 20 C -0.562 4.562 21 C -0.577 4.577 22 C -0.564 4.564 23 H 0.149 0.851 24 H 0.111 0.889 25 H 0.169 0.831 26 H 0.165 0.835 27 H 0.147 0.853 28 H 0.238 0.762 29 H 0.117 0.883 30 H 0.224 0.776 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.755 -2.877 -0.014 2.975 hybrid contribution -0.170 0.755 -1.190 1.419 sum -0.925 -2.122 -1.203 2.609 Atomic orbital electron populations 1.24534 0.94971 1.03138 0.92408 1.28195 1.01585 1.07368 1.06091 1.18901 0.95127 0.93211 0.91450 1.21490 0.98428 0.97723 0.99114 1.21211 0.97527 0.93376 0.97470 1.21668 1.03748 1.02987 0.95211 1.18787 0.96812 0.91082 0.86885 1.86829 1.67321 1.30088 1.39133 1.24140 0.72489 0.81371 0.90872 1.93072 1.35864 1.93625 1.96606 1.93073 1.88842 1.76717 1.60342 1.19842 1.03215 0.93582 0.98858 1.24992 0.94975 0.94677 1.03713 1.86711 1.41522 1.57905 1.48857 0.84819 0.77750 0.80991 0.75590 1.17405 1.18218 1.17118 0.77647 0.64542 0.62214 0.67062 1.26185 1.05654 1.05683 1.18679 1.26413 1.17575 1.04589 1.09082 1.26200 1.10083 1.12455 1.07694 0.85147 0.88892 0.83149 0.83504 0.85285 0.76170 0.88299 0.77614 0.91134 0.90858 0.90572 0.91909 0.90563 0.91999 0.90065 0.90605 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.61 11.97 66.67 0.80 1.41 16 2 C -0.39 1.18 3.20 23.66 0.08 1.26 16 3 C 0.01 0.02 4.90 -20.13 -0.10 -0.08 16 4 C -0.15 -0.17 9.42 22.53 0.21 0.04 16 5 C -0.08 -0.22 10.03 22.22 0.22 0.01 16 6 C -0.22 -1.36 8.25 22.42 0.19 -1.17 16 7 C 0.11 0.77 5.90 22.47 0.13 0.91 16 8 O -0.32 -2.06 7.04 -85.36 -0.60 -2.66 16 9 C 0.40 0.62 5.98 113.37 0.68 1.30 16 10 F -0.21 -0.99 15.58 44.97 0.70 -0.29 16 11 F -0.21 -0.94 15.58 44.97 0.70 -0.24 16 12 C -0.15 -0.73 4.55 -19.52 -0.09 -0.82 16 13 C -0.07 -0.23 2.36 71.23 0.17 -0.06 16 14 O -0.54 -1.94 12.03 -141.81 -1.71 -3.65 16 15 Si 0.99 5.43 26.81 68.60 1.84 7.27 16 16 H -0.25 -1.92 6.25 99.48 0.62 -1.30 16 17 H -0.26 -1.52 7.11 99.48 0.71 -0.81 16 18 H -0.25 -1.30 7.11 99.48 0.71 -0.59 16 19 Si 1.10 -6.16 12.16 68.60 0.83 -5.32 16 20 C -0.45 2.28 8.65 113.37 0.98 3.26 16 21 C -0.47 0.41 8.65 113.37 0.98 1.39 16 22 C -0.46 2.73 8.45 113.37 0.96 3.68 16 23 H 0.13 -1.25 7.22 -2.91 -0.02 -1.27 16 24 H 0.09 -0.46 8.05 -2.91 -0.02 -0.49 16 25 H 0.15 -0.52 7.87 -2.91 -0.02 -0.54 16 26 H 0.15 -0.24 8.06 -2.91 -0.02 -0.26 16 27 H 0.13 0.80 5.08 -2.91 -0.01 0.79 16 28 H 0.22 -1.75 8.14 -2.39 -0.02 -1.77 16 29 H 0.10 -0.12 5.24 -2.39 -0.01 -0.13 16 30 H 0.38 -0.94 9.11 -74.06 -0.67 -1.61 16 31 H 0.07 -0.33 7.77 -2.39 -0.02 -0.35 16 32 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 33 H 0.08 -0.44 7.96 -2.39 -0.02 -0.46 16 34 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 35 H 0.08 -0.16 7.96 -2.38 -0.02 -0.18 16 36 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 37 H 0.08 -0.62 7.63 -2.39 -0.02 -0.64 16 38 H 0.07 -0.44 7.96 -2.39 -0.02 -0.45 16 39 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 Total: 0.00 -12.62 331.88 8.03 -4.59 By element: Atomic # 1 Polarization: -11.87 SS G_CDS: 1.05 Total: -10.82 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 5.20 Total: 11.13 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -2.31 Total: -6.31 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 1.40 Total: -0.53 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.67 Total: 1.95 kcal Total: -12.62 8.03 -4.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_14048408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.882 kcal (2) G-P(sol) polarization free energy of solvation -12.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds