Wall clock time and date at job start Mon Mar 8 2021 11:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32637 * 1 3 3 C 1.47721 * 119.99956 * 2 1 4 4 C 1.40074 * 119.82626 * 46.43299 * 3 2 1 5 5 C 1.36337 * 120.38915 * 179.97438 * 4 3 2 6 6 C 1.39781 * 119.95676 * 0.02562 * 5 4 3 7 7 C 1.40828 * 120.15363 * 0.02562 * 6 5 4 8 8 C 1.38799 * 119.48443 * 359.70203 * 7 6 5 9 9 N 1.37786 * 107.14691 * 179.97438 * 7 6 5 10 10 C 1.36807 * 109.84934 * 359.97438 * 9 7 6 11 11 C 1.34313 * 109.95586 * 0.02562 * 10 9 7 12 12 C 1.50696 * 126.48073 * 180.02562 * 11 10 9 13 13 O 1.42901 * 109.46884 * 104.95384 * 12 11 10 14 14 Si 1.86298 * 109.47322 * 344.95715 * 12 11 10 15 15 H 1.48501 * 109.47291 * 59.99625 * 14 12 11 16 16 H 1.48496 * 109.47326 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46939 * 299.99900 * 14 12 11 18 18 Si 1.86802 * 120.00021 * 180.02562 * 2 1 3 19 19 C 1.86302 * 109.47249 * 89.26338 * 18 2 1 20 20 C 1.86296 * 109.47018 * 329.26495 * 18 2 1 21 21 C 1.86301 * 109.47046 * 209.26609 * 18 2 1 22 22 H 1.08002 * 119.99870 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99823 * 179.97438 * 1 2 3 24 24 H 1.08002 * 119.80582 * 359.97438 * 4 3 2 25 25 H 1.08000 * 120.02530 * 179.97438 * 5 4 3 26 26 H 1.07996 * 120.16109 * 180.29401 * 8 7 6 27 27 H 0.97000 * 125.07624 * 179.97438 * 9 7 6 28 28 H 1.08000 * 125.01927 * 179.97438 * 10 9 7 29 29 H 1.08993 * 109.47430 * 224.95219 * 12 11 10 30 30 H 0.96699 * 114.00822 * 300.00093 * 13 12 11 31 31 H 1.08996 * 109.47040 * 300.00016 * 19 18 2 32 32 H 1.09000 * 109.47066 * 180.02562 * 19 18 2 33 33 H 1.09002 * 109.46897 * 60.00246 * 19 18 2 34 34 H 1.09000 * 109.47368 * 180.02562 * 20 18 2 35 35 H 1.09005 * 109.47318 * 300.00076 * 20 18 2 36 36 H 1.08996 * 109.47330 * 59.99947 * 20 18 2 37 37 H 1.09004 * 109.46922 * 294.62320 * 21 18 2 38 38 H 1.08991 * 109.46995 * 54.63305 * 21 18 2 39 39 H 1.09003 * 109.46591 * 174.63286 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3264 0.0000 0.0000 3 6 2.0650 1.2793 0.0000 4 6 1.6880 2.3014 0.8805 5 6 2.3620 3.4865 0.8906 6 6 3.4356 3.6863 0.0181 7 6 3.8229 2.6662 -0.8723 8 6 3.1345 1.4610 -0.8715 9 7 4.8934 3.1439 -1.5964 10 6 5.1921 4.4182 -1.1981 11 6 4.3492 4.8042 -0.2263 12 6 4.3442 6.1361 0.4786 13 8 3.2543 6.9254 -0.0024 14 14 5.9482 7.0223 0.1432 15 1 6.0993 7.2364 -1.3185 16 1 5.9429 8.3351 0.8372 17 1 7.0807 6.2021 0.6430 18 14 2.2604 -1.6177 -0.0007 19 6 2.5513 -2.1661 -1.7573 20 6 1.2634 -2.9108 0.8964 21 6 3.8979 -1.3898 0.8581 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9354 -0.0004 24 1 0.8585 2.1498 1.5554 25 1 2.0660 4.2707 1.5716 26 1 3.4252 0.6696 -1.5464 27 1 5.3649 2.6503 -2.2856 28 1 5.9886 5.0239 -1.6045 29 1 4.2332 5.9791 1.5514 30 1 3.2878 7.1052 -0.9520 31 1 1.5933 -2.2995 -2.2597 32 1 3.0960 -3.1103 -1.7577 33 1 3.1347 -1.4095 -2.2821 34 1 1.8086 -3.8546 0.8964 35 1 1.0931 -2.5900 1.9241 36 1 0.3054 -3.0442 0.3940 37 1 4.5187 -0.7047 0.2806 38 1 3.7318 -0.9784 1.8536 39 1 4.4011 -2.3530 0.9422 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_15137872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:12:57 Heat of formation + Delta-G solvation = -6.171736 kcal Electronic energy + Delta-G solvation = -18870.759121 eV Core-core repulsion = 16095.161250 eV Total energy + Delta-G solvation = -2775.597871 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 275.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.19470 -38.44005 -37.53129 -34.17908 -32.80460 -30.56835 -29.60531 -29.37923 -28.42164 -28.16561 -26.33694 -23.78190 -23.36640 -20.72256 -20.19336 -18.90023 -17.62084 -16.96509 -16.60932 -16.02361 -15.85724 -15.16020 -14.98690 -14.93468 -14.65281 -14.44395 -14.18074 -14.06012 -13.86760 -13.73270 -13.35729 -13.26085 -13.12294 -13.04516 -12.77368 -12.42714 -12.36175 -12.15479 -12.00370 -11.69502 -11.28555 -10.88615 -10.84157 -10.47538 -10.24806 -10.13625 -8.93266 -8.48238 0.10313 0.68407 1.21030 1.21904 1.42849 1.52903 1.64592 1.81354 1.88447 1.95110 2.12404 2.21335 2.58247 3.14107 3.65659 3.79813 3.90241 3.97463 4.15709 4.38631 4.50377 4.64231 4.67451 4.70030 4.73646 4.73946 4.75836 4.80157 4.81257 4.81697 4.92337 4.96262 5.15635 5.39213 5.46165 5.51826 5.54561 5.58940 5.77222 5.78644 5.85701 5.94511 6.30245 6.55940 6.70772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.369 4.369 3 C -0.009 4.009 4 C -0.139 4.139 5 C -0.063 4.063 6 C -0.092 4.092 7 C 0.100 3.900 8 C -0.133 4.133 9 N -0.591 5.591 10 C 0.052 3.948 11 C -0.202 4.202 12 C -0.044 4.044 13 O -0.541 6.541 14 Si 0.947 3.053 15 H -0.254 1.254 16 H -0.251 1.251 17 H -0.251 1.251 18 Si 1.049 2.951 19 C -0.448 4.448 20 C -0.449 4.449 21 C -0.445 4.445 22 H 0.095 0.905 23 H 0.104 0.896 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.418 0.582 28 H 0.168 0.832 29 H 0.113 0.887 30 H 0.373 0.627 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -1.665 -1.665 2.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.411 4.411 3 C -0.011 4.011 4 C -0.158 4.158 5 C -0.081 4.081 6 C -0.096 4.096 7 C -0.007 4.007 8 C -0.153 4.153 9 N -0.194 5.194 10 C -0.075 4.075 11 C -0.210 4.210 12 C -0.155 4.155 13 O -0.345 6.345 14 Si 0.770 3.230 15 H -0.178 1.178 16 H -0.175 1.175 17 H -0.174 1.174 18 Si 1.240 2.760 19 C -0.555 4.555 20 C -0.557 4.557 21 C -0.553 4.553 22 H 0.113 0.887 23 H 0.122 0.878 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.140 0.860 27 H 0.255 0.745 28 H 0.185 0.815 29 H 0.131 0.869 30 H 0.220 0.780 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.114 -1.233 -1.295 2.769 hybrid contribution -0.045 -0.336 -0.886 0.949 sum 2.069 -1.569 -2.181 3.391 Atomic orbital electron populations 1.24306 0.95534 1.01876 0.94874 1.27937 1.00939 1.08060 1.04115 1.18548 0.94181 0.93385 0.94968 1.20807 1.01143 0.93080 1.00787 1.20243 0.93593 0.96998 0.97296 1.18980 0.98348 0.93272 0.99041 1.18144 0.91297 0.95689 0.95537 1.19997 0.97556 0.95131 1.02631 1.41712 1.28824 1.13668 1.35205 1.21653 1.00992 0.86353 0.98529 1.20673 1.00161 0.97289 1.02864 1.24263 1.00572 0.89525 1.01170 1.86514 1.47648 1.71827 1.28539 0.85790 0.75912 0.80393 0.80937 1.17788 1.17491 1.17445 0.78356 0.66475 0.63590 0.67551 1.26145 1.04926 1.05724 1.18711 1.26141 1.09041 1.12069 1.08427 1.26101 1.16606 1.04430 1.08176 0.88667 0.87810 0.86002 0.85834 0.86035 0.74507 0.81476 0.86929 0.77992 0.91096 0.91037 0.91383 0.90955 0.90980 0.91173 0.91237 0.91079 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.04 13.29 28.83 0.38 0.42 16 2 C -0.37 -0.06 4.40 -37.61 -0.17 -0.22 16 3 C -0.01 -0.02 5.27 -104.99 -0.55 -0.57 16 4 C -0.14 -0.33 9.24 -39.58 -0.37 -0.70 16 5 C -0.06 -0.19 10.03 -39.69 -0.40 -0.58 16 6 C -0.09 -0.30 6.35 -105.05 -0.67 -0.97 16 7 C 0.10 0.23 7.26 -84.00 -0.61 -0.38 16 8 C -0.13 -0.22 8.80 -39.03 -0.34 -0.56 16 9 N -0.59 0.00 6.07 -10.66 -0.06 -0.07 16 10 C 0.05 0.00 10.43 -16.72 -0.17 -0.18 16 11 C -0.20 -0.32 5.57 -102.72 -0.57 -0.90 16 12 C -0.04 -0.02 3.06 36.00 0.11 0.09 16 13 O -0.54 -0.74 12.88 -35.23 -0.45 -1.19 16 14 Si 0.95 -0.61 26.08 -169.99 -4.43 -5.04 16 15 H -0.25 0.28 7.03 56.52 0.40 0.68 16 16 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 17 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 18 Si 1.05 -1.85 11.13 -169.99 -1.89 -3.75 16 19 C -0.45 0.60 8.65 101.05 0.87 1.47 16 20 C -0.45 0.61 8.51 101.05 0.86 1.47 16 21 C -0.45 0.22 8.65 101.05 0.87 1.09 16 22 H 0.10 0.00 7.83 -52.49 -0.41 -0.41 16 23 H 0.10 -0.20 7.28 -52.48 -0.38 -0.59 16 24 H 0.12 0.13 7.92 -52.49 -0.42 -0.29 16 25 H 0.12 0.25 8.06 -52.49 -0.42 -0.17 16 26 H 0.12 -0.04 6.63 -52.49 -0.35 -0.39 16 27 H 0.42 -1.23 8.96 -40.82 -0.37 -1.60 16 28 H 0.17 -0.46 6.29 -52.49 -0.33 -0.79 16 29 H 0.11 0.03 7.96 -51.93 -0.41 -0.39 16 30 H 0.37 -0.69 8.70 45.56 0.40 -0.30 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 -0.09 7.31 -51.93 -0.38 -0.47 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.12 7.64 -51.93 -0.40 -0.51 16 37 H 0.07 -0.01 7.59 -51.93 -0.39 -0.40 16 38 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 39 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 LS Contribution 326.88 15.07 4.93 4.93 Total: 0.00 -5.82 326.88 -7.81 -13.63 By element: Atomic # 1 Polarization: -2.86 SS G_CDS: -5.14 Total: -8.00 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.75 Total: -0.51 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: -0.06 Total: -0.07 kcal Atomic # 8 Polarization: -0.74 SS G_CDS: -0.45 Total: -1.19 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: -6.33 Total: -8.79 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -5.82 -7.81 -13.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15137872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.463 kcal (2) G-P(sol) polarization free energy of solvation -5.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds