Wall clock time and date at job start Mon Mar 8 2021 11:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32637 * 1 3 3 C 1.47721 * 119.99956 * 2 1 4 4 C 1.40074 * 119.82626 * 46.43299 * 3 2 1 5 5 C 1.36337 * 120.38915 * 179.97438 * 4 3 2 6 6 C 1.39781 * 119.95676 * 0.02562 * 5 4 3 7 7 C 1.40828 * 120.15363 * 0.02562 * 6 5 4 8 8 C 1.38799 * 119.48443 * 359.70203 * 7 6 5 9 9 N 1.37786 * 107.14691 * 179.97438 * 7 6 5 10 10 C 1.36807 * 109.84934 * 359.97438 * 9 7 6 11 11 C 1.34313 * 109.95586 * 0.02562 * 10 9 7 12 12 C 1.50696 * 126.48073 * 180.02562 * 11 10 9 13 13 O 1.42901 * 109.46884 * 104.95384 * 12 11 10 14 14 Si 1.86298 * 109.47322 * 344.95715 * 12 11 10 15 15 H 1.48501 * 109.47291 * 59.99625 * 14 12 11 16 16 H 1.48496 * 109.47326 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46939 * 299.99900 * 14 12 11 18 18 Si 1.86802 * 120.00021 * 180.02562 * 2 1 3 19 19 C 1.86302 * 109.47249 * 89.26338 * 18 2 1 20 20 C 1.86296 * 109.47018 * 329.26495 * 18 2 1 21 21 C 1.86301 * 109.47046 * 209.26609 * 18 2 1 22 22 H 1.08002 * 119.99870 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99823 * 179.97438 * 1 2 3 24 24 H 1.08002 * 119.80582 * 359.97438 * 4 3 2 25 25 H 1.08000 * 120.02530 * 179.97438 * 5 4 3 26 26 H 1.07996 * 120.16109 * 180.29401 * 8 7 6 27 27 H 0.97000 * 125.07624 * 179.97438 * 9 7 6 28 28 H 1.08000 * 125.01927 * 179.97438 * 10 9 7 29 29 H 1.08993 * 109.47430 * 224.95219 * 12 11 10 30 30 H 0.96699 * 114.00822 * 300.00093 * 13 12 11 31 31 H 1.08996 * 109.47040 * 300.00016 * 19 18 2 32 32 H 1.09000 * 109.47066 * 180.02562 * 19 18 2 33 33 H 1.09002 * 109.46897 * 60.00246 * 19 18 2 34 34 H 1.09000 * 109.47368 * 180.02562 * 20 18 2 35 35 H 1.09005 * 109.47318 * 300.00076 * 20 18 2 36 36 H 1.08996 * 109.47330 * 59.99947 * 20 18 2 37 37 H 1.09004 * 109.46922 * 294.62320 * 21 18 2 38 38 H 1.08991 * 109.46995 * 54.63305 * 21 18 2 39 39 H 1.09003 * 109.46591 * 174.63286 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3264 0.0000 0.0000 3 6 2.0650 1.2793 0.0000 4 6 1.6880 2.3014 0.8805 5 6 2.3620 3.4865 0.8906 6 6 3.4356 3.6863 0.0181 7 6 3.8229 2.6662 -0.8723 8 6 3.1345 1.4610 -0.8715 9 7 4.8934 3.1439 -1.5964 10 6 5.1921 4.4182 -1.1981 11 6 4.3492 4.8042 -0.2263 12 6 4.3442 6.1361 0.4786 13 8 3.2543 6.9254 -0.0024 14 14 5.9482 7.0223 0.1432 15 1 6.0993 7.2364 -1.3185 16 1 5.9429 8.3351 0.8372 17 1 7.0807 6.2021 0.6430 18 14 2.2604 -1.6177 -0.0007 19 6 2.5513 -2.1661 -1.7573 20 6 1.2634 -2.9108 0.8964 21 6 3.8979 -1.3898 0.8581 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9354 -0.0004 24 1 0.8585 2.1498 1.5554 25 1 2.0660 4.2707 1.5716 26 1 3.4252 0.6696 -1.5464 27 1 5.3649 2.6503 -2.2856 28 1 5.9886 5.0239 -1.6045 29 1 4.2332 5.9791 1.5514 30 1 3.2878 7.1052 -0.9520 31 1 1.5933 -2.2995 -2.2597 32 1 3.0960 -3.1103 -1.7577 33 1 3.1347 -1.4095 -2.2821 34 1 1.8086 -3.8546 0.8964 35 1 1.0931 -2.5900 1.9241 36 1 0.3054 -3.0442 0.3940 37 1 4.5187 -0.7047 0.2806 38 1 3.7318 -0.9784 1.8536 39 1 4.4011 -2.3530 0.9422 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_15137872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:12:56 Heat of formation + Delta-G solvation = 1.063872 kcal Electronic energy + Delta-G solvation = -18870.445361 eV Core-core repulsion = 16095.161250 eV Total energy + Delta-G solvation = -2775.284111 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 275.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.24894 -38.50375 -37.57908 -34.21098 -32.84981 -30.65071 -29.56115 -29.35381 -28.29494 -28.09213 -26.36622 -23.84357 -23.45496 -20.78345 -20.21250 -18.93441 -17.66403 -16.99724 -16.65821 -16.06977 -15.86969 -15.18552 -15.04556 -14.95116 -14.72646 -14.44976 -14.08945 -13.98054 -13.81024 -13.66630 -13.23160 -13.18380 -13.04668 -12.97133 -12.84022 -12.46158 -12.37349 -12.21608 -12.00701 -11.69616 -11.25369 -10.84404 -10.77593 -10.49494 -10.26648 -10.12592 -9.04236 -8.54437 0.02471 0.55639 1.22931 1.24666 1.48663 1.55317 1.65439 1.88253 1.97603 2.01397 2.17994 2.28406 2.66581 3.01728 3.68506 3.77536 3.93310 3.94499 4.09732 4.33782 4.45047 4.59596 4.67472 4.75100 4.81598 4.82122 4.84177 4.86247 4.87737 4.88649 4.89467 4.97030 5.10302 5.37017 5.45980 5.56597 5.63836 5.65000 5.69256 5.73153 5.75427 5.90671 6.21182 6.64384 6.81557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.384 4.384 3 C -0.020 4.020 4 C -0.151 4.151 5 C -0.081 4.081 6 C -0.120 4.120 7 C 0.085 3.915 8 C -0.137 4.137 9 N -0.583 5.583 10 C 0.062 3.938 11 C -0.224 4.224 12 C -0.052 4.052 13 O -0.560 6.560 14 Si 0.995 3.005 15 H -0.238 1.238 16 H -0.277 1.277 17 H -0.259 1.259 18 Si 1.106 2.894 19 C -0.456 4.456 20 C -0.459 4.459 21 C -0.460 4.460 22 H 0.086 0.914 23 H 0.123 0.877 24 H 0.127 0.873 25 H 0.121 0.879 26 H 0.140 0.860 27 H 0.432 0.568 28 H 0.198 0.802 29 H 0.104 0.896 30 H 0.386 0.614 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -2.380 -2.847 4.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.424 4.424 3 C -0.022 4.022 4 C -0.170 4.170 5 C -0.100 4.100 6 C -0.124 4.124 7 C -0.022 4.022 8 C -0.157 4.157 9 N -0.187 5.187 10 C -0.065 4.065 11 C -0.232 4.232 12 C -0.162 4.162 13 O -0.367 6.367 14 Si 0.817 3.183 15 H -0.161 1.161 16 H -0.202 1.202 17 H -0.183 1.183 18 Si 1.294 2.706 19 C -0.563 4.563 20 C -0.566 4.566 21 C -0.567 4.567 22 H 0.105 0.895 23 H 0.141 0.859 24 H 0.145 0.855 25 H 0.139 0.861 26 H 0.158 0.842 27 H 0.272 0.728 28 H 0.215 0.785 29 H 0.122 0.878 30 H 0.234 0.766 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.800 -1.953 -2.499 4.231 hybrid contribution -0.283 -0.094 -0.488 0.572 sum 2.517 -2.047 -2.987 4.410 Atomic orbital electron populations 1.24480 0.95562 1.02443 0.94426 1.28358 1.01324 1.08283 1.04420 1.18805 0.94557 0.93946 0.94846 1.20982 1.01394 0.93305 1.01302 1.20351 0.94352 0.97370 0.97914 1.19342 0.98912 0.94562 0.99582 1.18331 0.92119 0.95821 0.95926 1.20252 0.97301 0.95461 1.02698 1.41759 1.28139 1.13764 1.35081 1.22101 1.00733 0.86271 0.97425 1.20862 1.00746 0.97500 1.04099 1.24474 1.01442 0.89486 1.00766 1.86472 1.48453 1.71972 1.29805 0.85119 0.73894 0.78074 0.81242 1.16074 1.20228 1.18293 0.77498 0.64583 0.61819 0.66735 1.26227 1.05164 1.06061 1.18894 1.26240 1.09568 1.12403 1.08415 1.26303 1.18012 1.04497 1.07857 0.89548 0.85891 0.85545 0.86147 0.84199 0.72802 0.78502 0.87790 0.76562 0.90919 0.90576 0.91242 0.90603 0.91278 0.90564 0.91694 0.92064 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.04 13.29 66.66 0.89 0.93 16 2 C -0.38 -0.25 4.40 23.61 0.10 -0.14 16 3 C -0.02 -0.10 5.27 -20.11 -0.11 -0.20 16 4 C -0.15 -1.03 9.24 22.27 0.21 -0.82 16 5 C -0.08 -0.68 10.03 22.20 0.22 -0.46 16 6 C -0.12 -0.96 6.35 -20.14 -0.13 -1.09 16 7 C 0.09 0.45 7.26 38.98 0.28 0.73 16 8 C -0.14 -0.53 8.80 22.62 0.20 -0.33 16 9 N -0.58 0.30 6.07 -187.62 -1.14 -0.84 16 10 C 0.06 -0.05 10.43 83.02 0.87 0.82 16 11 C -0.22 -0.87 5.57 -18.63 -0.10 -0.97 16 12 C -0.05 -0.10 3.06 71.23 0.22 0.11 16 13 O -0.56 -2.17 12.88 -148.98 -1.92 -4.09 16 14 Si 0.99 -1.65 26.08 68.60 1.79 0.14 16 15 H -0.24 1.04 7.03 99.48 0.70 1.74 16 16 H -0.28 -0.69 7.11 99.48 0.71 0.02 16 17 H -0.26 0.12 7.11 99.48 0.71 0.83 16 18 Si 1.11 -4.33 11.13 68.60 0.76 -3.57 16 19 C -0.46 1.67 8.65 113.37 0.98 2.65 16 20 C -0.46 1.57 8.51 113.37 0.96 2.54 16 21 C -0.46 0.32 8.65 113.37 0.98 1.31 16 22 H 0.09 0.10 7.83 -2.91 -0.02 0.07 16 23 H 0.12 -0.57 7.28 -2.91 -0.02 -0.59 16 24 H 0.13 0.56 7.92 -2.91 -0.02 0.53 16 25 H 0.12 0.88 8.06 -2.91 -0.02 0.86 16 26 H 0.14 -0.13 6.63 -2.91 -0.02 -0.15 16 27 H 0.43 -3.01 8.96 -92.71 -0.83 -3.85 16 28 H 0.20 -1.50 6.29 -2.91 -0.02 -1.52 16 29 H 0.10 0.27 7.96 -2.39 -0.02 0.26 16 30 H 0.39 -1.20 8.70 -74.06 -0.64 -1.85 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.28 16 32 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 33 H 0.07 -0.26 7.31 -2.39 -0.02 -0.28 16 34 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 35 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 36 H 0.08 -0.34 7.64 -2.39 -0.02 -0.36 16 37 H 0.06 0.01 7.59 -2.38 -0.02 -0.01 16 38 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 39 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 Total: 0.00 -14.21 326.88 5.39 -8.82 By element: Atomic # 1 Polarization: -5.85 SS G_CDS: 0.32 Total: -5.53 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.57 Total: 5.06 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -1.14 Total: -0.84 kcal Atomic # 8 Polarization: -2.17 SS G_CDS: -1.92 Total: -4.09 kcal Atomic # 14 Polarization: -5.98 SS G_CDS: 2.55 Total: -3.43 kcal Total: -14.21 5.39 -8.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15137872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.887 kcal (2) G-P(sol) polarization free energy of solvation -14.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds