Wall clock time and date at job start Mon Mar 8 2021 11:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32570 * 1 3 3 C 1.47811 * 120.00133 * 2 1 4 4 C 1.39510 * 120.14505 * 245.66854 * 3 2 1 5 5 C 1.37989 * 119.85780 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.93120 * 179.97438 * 5 4 3 7 7 F 1.39896 * 109.47098 * 89.99760 * 6 5 4 8 8 F 1.39901 * 109.47037 * 209.99917 * 6 5 4 9 9 F 1.39900 * 109.46727 * 329.99928 * 6 5 4 10 10 C 1.38323 * 120.14478 * 359.97438 * 5 4 3 11 11 C 1.38376 * 120.28312 * 359.74933 * 10 5 4 12 12 C 1.37947 * 120.13818 * 0.50690 * 11 10 5 13 13 C 1.50706 * 120.07120 * 179.76746 * 12 11 10 14 14 O 1.42890 * 109.47446 * 255.31427 * 13 12 11 15 15 Si 1.86304 * 109.46716 * 15.31669 * 13 12 11 16 16 H 1.48493 * 109.47243 * 59.99833 * 15 13 12 17 17 H 1.48499 * 109.46731 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46797 * 299.99372 * 15 13 12 19 19 Si 1.86796 * 119.99815 * 180.02562 * 2 1 3 20 20 C 1.86303 * 109.47191 * 265.02755 * 19 2 1 21 21 C 1.86297 * 109.47446 * 25.02717 * 19 2 1 22 22 C 1.86302 * 109.47048 * 145.02792 * 19 2 1 23 23 H 1.08005 * 120.00152 * 5.05101 * 1 2 3 24 24 H 1.07999 * 120.00300 * 185.04446 * 1 2 3 25 25 H 1.08001 * 120.06654 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.86279 * 180.02562 * 10 5 4 27 27 H 1.07996 * 119.92866 * 180.24998 * 11 10 5 28 28 H 1.09006 * 109.47005 * 135.31300 * 13 12 11 29 29 H 0.96708 * 114.00209 * 59.99810 * 14 13 12 30 30 H 1.08999 * 109.47011 * 59.99685 * 20 19 2 31 31 H 1.08990 * 109.47176 * 180.02562 * 20 19 2 32 32 H 1.09002 * 109.46494 * 300.00285 * 20 19 2 33 33 H 1.08999 * 109.47248 * 59.99897 * 21 19 2 34 34 H 1.09004 * 109.47464 * 180.02562 * 21 19 2 35 35 H 1.09005 * 109.47445 * 300.00229 * 21 19 2 36 36 H 1.09003 * 109.47087 * 64.98047 * 22 19 2 37 37 H 1.09003 * 109.47133 * 184.98070 * 22 19 2 38 38 H 1.09000 * 109.46998 * 304.97667 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 2.8456 1.6383 -1.0993 5 6 3.5335 2.8344 -1.0927 6 6 4.3779 3.2227 -2.2791 7 9 3.5987 3.9442 -3.1899 8 9 5.4480 4.0154 -1.8504 9 9 4.8707 2.0691 -2.8982 10 6 3.4498 3.6779 0.0003 11 6 2.6726 3.3312 1.0914 12 6 1.9842 2.1358 1.0995 13 6 1.1423 1.7572 2.2909 14 8 1.8190 0.7562 3.0536 15 14 0.8580 3.2610 3.3532 16 1 0.1547 4.3013 2.5605 17 1 0.0290 2.8879 4.5274 18 1 2.1642 3.7922 3.8189 19 14 2.2596 -1.6177 -0.0007 20 6 2.7020 -2.0802 1.7489 21 6 1.1919 -2.9510 -0.7444 22 6 3.8166 -1.4355 -1.0074 23 1 -0.5401 0.9317 -0.0823 24 1 -0.5400 -0.9316 0.0822 25 1 2.9121 0.9803 -1.9531 26 1 3.9898 4.6133 0.0004 27 1 2.6081 3.9959 1.9401 28 1 0.1835 1.3673 1.9490 29 1 2.6816 1.0346 3.3907 30 1 1.7910 -2.1868 2.3379 31 1 3.2473 -3.0239 1.7485 32 1 3.3267 -1.3001 2.1840 33 1 0.9330 -2.6805 -1.7680 34 1 1.7367 -3.8951 -0.7444 35 1 0.2808 -3.0577 -0.1554 36 1 4.4805 -0.7191 -0.5234 37 1 4.3164 -2.4013 -1.0817 38 1 3.5639 -1.0794 -2.0061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_15562958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:14:36 Heat of formation + Delta-G solvation = -185.613653 kcal Electronic energy + Delta-G solvation = -23800.061736 eV Core-core repulsion = 19930.198945 eV Total energy + Delta-G solvation = -3869.862791 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.09393 -48.60967 -48.55450 -41.02322 -37.75825 -35.27454 -33.34793 -30.96029 -29.51694 -28.56555 -28.33490 -28.21573 -25.36447 -24.39972 -22.63208 -20.96173 -19.42521 -19.37549 -18.77601 -18.37174 -17.09165 -16.78571 -16.16695 -15.88752 -15.56266 -15.48033 -15.26693 -15.10989 -15.00385 -14.82858 -14.70607 -14.60583 -14.16240 -14.12769 -13.98162 -13.84469 -13.65051 -13.37998 -13.26264 -13.19670 -13.02012 -12.91651 -12.77671 -12.25066 -12.21884 -11.83028 -11.19729 -11.04907 -10.89109 -10.49356 -10.35091 -10.29042 -9.56486 -0.29687 0.01249 0.95686 1.04180 1.29974 1.42007 1.67549 1.69854 1.81348 1.86044 2.10782 2.32003 2.62079 2.72999 3.03269 3.36590 3.45690 3.53787 3.65520 3.72495 4.03117 4.17174 4.38550 4.51368 4.63015 4.66758 4.70467 4.73161 4.76606 4.78862 4.90131 4.91847 4.92632 5.00702 5.19298 5.28751 5.45185 5.52839 5.58389 5.68958 5.70749 6.46131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.365 4.365 3 C -0.005 4.005 4 C -0.070 4.070 5 C -0.173 4.173 6 C 0.507 3.493 7 F -0.176 7.176 8 F -0.176 7.176 9 F -0.175 7.175 10 C -0.073 4.073 11 C -0.125 4.125 12 C -0.087 4.087 13 C -0.081 4.081 14 O -0.525 6.525 15 Si 0.940 3.060 16 H -0.248 1.248 17 H -0.250 1.250 18 H -0.249 1.249 19 Si 1.051 2.949 20 C -0.436 4.436 21 C -0.450 4.450 22 C -0.450 4.450 23 H 0.094 0.906 24 H 0.109 0.891 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.374 0.626 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -0.961 2.067 2.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.406 4.406 3 C -0.005 4.005 4 C -0.088 4.088 5 C -0.174 4.174 6 C 0.453 3.547 7 F -0.157 7.157 8 F -0.157 7.157 9 F -0.156 7.156 10 C -0.091 4.091 11 C -0.143 4.143 12 C -0.088 4.088 13 C -0.192 4.192 14 O -0.330 6.330 15 Si 0.762 3.238 16 H -0.171 1.171 17 H -0.173 1.173 18 H -0.173 1.173 19 Si 1.242 2.758 20 C -0.544 4.544 21 C -0.558 4.558 22 C -0.557 4.557 23 H 0.112 0.888 24 H 0.127 0.873 25 H 0.159 0.841 26 H 0.156 0.844 27 H 0.152 0.848 28 H 0.139 0.861 29 H 0.221 0.779 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.090 -0.486 2.405 3.223 hybrid contribution 0.699 0.318 -0.528 0.932 sum -1.390 -0.168 1.877 2.342 Atomic orbital electron populations 1.24222 0.95267 1.02092 0.94556 1.27835 1.00982 1.07406 1.04374 1.18737 0.95939 0.93763 0.92088 1.21132 0.94302 0.94600 0.98784 1.19937 1.03406 0.98899 0.95195 1.18308 0.78492 0.74793 0.83093 1.93242 1.74609 1.78534 1.69300 1.93204 1.57948 1.74912 1.89669 1.93209 1.88517 1.49514 1.84399 1.20900 0.97345 0.99032 0.91798 1.21057 0.97652 0.96664 0.98894 1.20649 0.97816 0.93751 0.96544 1.25056 0.98241 1.02428 0.93495 1.86576 1.36322 1.39640 1.70430 0.85836 0.81591 0.76280 0.80078 1.17149 1.17314 1.17316 0.78367 0.66050 0.63205 0.68198 1.25983 1.05601 1.04836 1.18004 1.26165 1.09823 1.12683 1.07085 1.26190 1.15710 1.04813 1.08996 0.88761 0.87302 0.84099 0.84371 0.84787 0.86061 0.77865 0.90898 0.91708 0.90915 0.91127 0.90867 0.91124 0.91119 0.90918 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.22 11.82 28.83 0.34 0.56 16 2 C -0.37 0.46 3.54 -37.57 -0.13 0.32 16 3 C -0.01 0.00 4.90 -105.01 -0.51 -0.51 16 4 C -0.07 -0.02 8.21 -39.20 -0.32 -0.34 16 5 C -0.17 -0.14 5.45 -104.68 -0.57 -0.71 16 6 C 0.51 0.88 3.36 36.01 0.12 1.01 16 7 F -0.18 -0.46 17.30 2.25 0.04 -0.42 16 8 F -0.18 -0.37 16.45 2.25 0.04 -0.34 16 9 F -0.18 -0.39 16.46 2.25 0.04 -0.35 16 10 C -0.07 0.01 9.39 -39.50 -0.37 -0.36 16 11 C -0.13 0.10 8.65 -39.64 -0.34 -0.24 16 12 C -0.09 0.06 5.27 -104.23 -0.55 -0.49 16 13 C -0.08 0.13 2.12 36.01 0.08 0.20 16 14 O -0.53 0.81 12.74 -35.23 -0.45 0.36 16 15 Si 0.94 -1.39 25.51 -169.99 -4.34 -5.73 16 16 H -0.25 0.14 7.11 56.52 0.40 0.54 16 17 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 18 H -0.25 0.42 6.72 56.52 0.38 0.80 16 19 Si 1.05 -2.38 12.28 -169.99 -2.09 -4.47 16 20 C -0.44 0.51 8.65 101.05 0.87 1.38 16 21 C -0.45 0.81 8.42 101.05 0.85 1.66 16 22 C -0.45 0.54 7.73 101.05 0.78 1.32 16 23 H 0.09 -0.18 7.87 -52.48 -0.41 -0.60 16 24 H 0.11 -0.33 7.19 -52.49 -0.38 -0.71 16 25 H 0.14 -0.09 6.52 -52.49 -0.34 -0.43 16 26 H 0.14 -0.21 7.59 -52.49 -0.40 -0.61 16 27 H 0.13 -0.31 4.89 -52.49 -0.26 -0.57 16 28 H 0.12 -0.23 5.85 -51.93 -0.30 -0.54 16 29 H 0.37 -1.65 8.70 45.56 0.40 -1.25 16 30 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 31 H 0.06 -0.08 7.96 -51.93 -0.41 -0.49 16 32 H 0.07 -0.07 7.85 -51.93 -0.41 -0.48 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.07 -0.14 7.62 -51.93 -0.40 -0.54 16 36 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 38 H 0.07 -0.08 7.20 -51.93 -0.37 -0.46 16 LS Contribution 328.29 15.07 4.95 4.95 Total: 0.00 -3.89 328.29 -5.74 -9.64 By element: Atomic # 1 Polarization: -3.26 SS G_CDS: -4.17 Total: -7.43 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 0.24 Total: 3.80 kcal Atomic # 8 Polarization: 0.81 SS G_CDS: -0.45 Total: 0.36 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.11 Total: -1.11 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: -6.42 Total: -10.20 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -3.89 -5.74 -9.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15562958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.976 kcal (2) G-P(sol) polarization free energy of solvation -3.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds