Wall clock time and date at job start Mon Mar 8 2021 11:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32570 * 1 3 3 C 1.47811 * 120.00133 * 2 1 4 4 C 1.39510 * 120.14505 * 245.66854 * 3 2 1 5 5 C 1.37989 * 119.85780 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.93120 * 179.97438 * 5 4 3 7 7 F 1.39896 * 109.47098 * 89.99760 * 6 5 4 8 8 F 1.39901 * 109.47037 * 209.99917 * 6 5 4 9 9 F 1.39900 * 109.46727 * 329.99928 * 6 5 4 10 10 C 1.38323 * 120.14478 * 359.97438 * 5 4 3 11 11 C 1.38376 * 120.28312 * 359.74933 * 10 5 4 12 12 C 1.37947 * 120.13818 * 0.50690 * 11 10 5 13 13 C 1.50706 * 120.07120 * 179.76746 * 12 11 10 14 14 O 1.42890 * 109.47446 * 255.31427 * 13 12 11 15 15 Si 1.86304 * 109.46716 * 15.31669 * 13 12 11 16 16 H 1.48493 * 109.47243 * 59.99833 * 15 13 12 17 17 H 1.48499 * 109.46731 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46797 * 299.99372 * 15 13 12 19 19 Si 1.86796 * 119.99815 * 180.02562 * 2 1 3 20 20 C 1.86303 * 109.47191 * 265.02755 * 19 2 1 21 21 C 1.86297 * 109.47446 * 25.02717 * 19 2 1 22 22 C 1.86302 * 109.47048 * 145.02792 * 19 2 1 23 23 H 1.08005 * 120.00152 * 5.05101 * 1 2 3 24 24 H 1.07999 * 120.00300 * 185.04446 * 1 2 3 25 25 H 1.08001 * 120.06654 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.86279 * 180.02562 * 10 5 4 27 27 H 1.07996 * 119.92866 * 180.24998 * 11 10 5 28 28 H 1.09006 * 109.47005 * 135.31300 * 13 12 11 29 29 H 0.96708 * 114.00209 * 59.99810 * 14 13 12 30 30 H 1.08999 * 109.47011 * 59.99685 * 20 19 2 31 31 H 1.08990 * 109.47176 * 180.02562 * 20 19 2 32 32 H 1.09002 * 109.46494 * 300.00285 * 20 19 2 33 33 H 1.08999 * 109.47248 * 59.99897 * 21 19 2 34 34 H 1.09004 * 109.47464 * 180.02562 * 21 19 2 35 35 H 1.09005 * 109.47445 * 300.00229 * 21 19 2 36 36 H 1.09003 * 109.47087 * 64.98047 * 22 19 2 37 37 H 1.09003 * 109.47133 * 184.98070 * 22 19 2 38 38 H 1.09000 * 109.46998 * 304.97667 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 2.8456 1.6383 -1.0993 5 6 3.5335 2.8344 -1.0927 6 6 4.3779 3.2227 -2.2791 7 9 3.5987 3.9442 -3.1899 8 9 5.4480 4.0154 -1.8504 9 9 4.8707 2.0691 -2.8982 10 6 3.4498 3.6779 0.0003 11 6 2.6726 3.3312 1.0914 12 6 1.9842 2.1358 1.0995 13 6 1.1423 1.7572 2.2909 14 8 1.8190 0.7562 3.0536 15 14 0.8580 3.2610 3.3532 16 1 0.1547 4.3013 2.5605 17 1 0.0290 2.8879 4.5274 18 1 2.1642 3.7922 3.8189 19 14 2.2596 -1.6177 -0.0007 20 6 2.7020 -2.0802 1.7489 21 6 1.1919 -2.9510 -0.7444 22 6 3.8166 -1.4355 -1.0074 23 1 -0.5401 0.9317 -0.0823 24 1 -0.5400 -0.9316 0.0822 25 1 2.9121 0.9803 -1.9531 26 1 3.9898 4.6133 0.0004 27 1 2.6081 3.9959 1.9401 28 1 0.1835 1.3673 1.9490 29 1 2.6816 1.0346 3.3907 30 1 1.7910 -2.1868 2.3379 31 1 3.2473 -3.0239 1.7485 32 1 3.3267 -1.3001 2.1840 33 1 0.9330 -2.6805 -1.7680 34 1 1.7367 -3.8951 -0.7444 35 1 0.2808 -3.0577 -0.1554 36 1 4.4805 -0.7191 -0.5234 37 1 4.3164 -2.4013 -1.0817 38 1 3.5639 -1.0794 -2.0061 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_15562958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:14:35 Heat of formation + Delta-G solvation = -175.255975 kcal Electronic energy + Delta-G solvation = -23799.612593 eV Core-core repulsion = 19930.198945 eV Total energy + Delta-G solvation = -3869.413648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.25030 -48.76717 -48.72521 -40.95356 -37.63870 -35.16600 -33.29411 -30.86436 -29.39125 -28.51899 -28.20633 -28.11638 -25.36865 -24.32620 -22.57235 -20.92355 -19.58299 -19.50504 -18.76934 -18.26470 -17.02316 -16.69918 -16.07612 -15.82274 -15.64759 -15.52456 -15.30684 -15.16207 -15.01533 -14.93701 -14.87767 -14.59679 -14.10780 -13.99325 -13.85047 -13.72987 -13.58656 -13.28239 -13.14288 -13.09015 -12.92379 -12.85913 -12.68342 -12.19439 -12.12899 -11.72923 -11.07173 -10.92556 -10.75572 -10.36623 -10.27024 -10.21261 -9.47760 -0.26444 0.07244 1.09034 1.16820 1.41276 1.51440 1.58041 1.85198 1.90786 2.03028 2.24753 2.39202 2.63971 2.75066 2.93551 3.32669 3.52526 3.65741 3.74516 3.81392 4.11454 4.24725 4.46890 4.63463 4.72678 4.82369 4.84226 4.84982 4.87653 4.94604 4.98362 5.00850 5.01753 5.05248 5.28298 5.39847 5.58930 5.63955 5.70444 5.79296 5.83642 6.74942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.379 4.379 3 C -0.009 4.009 4 C -0.079 4.079 5 C -0.184 4.184 6 C 0.507 3.493 7 F -0.183 7.183 8 F -0.179 7.179 9 F -0.180 7.180 10 C -0.079 4.079 11 C -0.127 4.127 12 C -0.089 4.089 13 C -0.077 4.077 14 O -0.534 6.534 15 Si 0.967 3.033 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.242 1.242 19 Si 1.101 2.899 20 C -0.447 4.447 21 C -0.459 4.459 22 C -0.463 4.463 23 H 0.095 0.905 24 H 0.123 0.877 25 H 0.145 0.855 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.125 0.875 29 H 0.387 0.613 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 -1.159 2.476 3.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.419 4.419 3 C -0.010 4.010 4 C -0.097 4.097 5 C -0.185 4.185 6 C 0.453 3.547 7 F -0.164 7.164 8 F -0.161 7.161 9 F -0.161 7.161 10 C -0.097 4.097 11 C -0.144 4.144 12 C -0.090 4.090 13 C -0.188 4.188 14 O -0.340 6.340 15 Si 0.791 3.209 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.166 1.166 19 Si 1.289 2.711 20 C -0.554 4.554 21 C -0.566 4.566 22 C -0.569 4.569 23 H 0.113 0.887 24 H 0.141 0.859 25 H 0.162 0.838 26 H 0.167 0.833 27 H 0.166 0.834 28 H 0.142 0.858 29 H 0.235 0.765 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.395 -0.680 2.815 3.758 hybrid contribution 0.798 0.379 -0.641 1.091 sum -1.597 -0.301 2.174 2.714 Atomic orbital electron populations 1.24410 0.95177 1.02849 0.93605 1.28013 1.01334 1.07367 1.05192 1.18886 0.95859 0.94248 0.91967 1.21248 0.94567 0.94617 0.99264 1.19951 1.03873 0.99531 0.95143 1.18451 0.78465 0.74495 0.83297 1.93223 1.74768 1.78724 1.69684 1.93191 1.58176 1.75028 1.89673 1.93194 1.88610 1.49744 1.84573 1.21088 0.97569 0.99364 0.91690 1.21242 0.97222 0.96840 0.99106 1.20812 0.97726 0.93729 0.96702 1.25039 0.98263 1.02419 0.93099 1.86551 1.37244 1.39849 1.70391 0.85462 0.81104 0.75659 0.78687 1.18463 1.19720 1.16585 0.77563 0.64655 0.62229 0.66611 1.26121 1.05407 1.04811 1.19025 1.26255 1.10200 1.12854 1.07288 1.26365 1.16612 1.04636 1.09322 0.88707 0.85923 0.83766 0.83327 0.83359 0.85764 0.76450 0.91249 0.91729 0.91185 0.91057 0.90890 0.90651 0.91788 0.90849 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.52 11.82 66.67 0.79 1.31 16 2 C -0.38 1.06 3.54 23.65 0.08 1.14 16 3 C -0.01 0.00 4.90 -20.12 -0.10 -0.09 16 4 C -0.08 -0.08 8.21 22.52 0.18 0.10 16 5 C -0.18 -0.39 5.45 -19.90 -0.11 -0.50 16 6 C 0.51 2.16 3.36 71.24 0.24 2.40 16 7 F -0.18 -1.11 17.30 44.97 0.78 -0.33 16 8 F -0.18 -0.87 16.45 44.97 0.74 -0.13 16 9 F -0.18 -0.96 16.46 44.97 0.74 -0.22 16 10 C -0.08 0.02 9.39 22.32 0.21 0.23 16 11 C -0.13 0.25 8.65 22.23 0.19 0.44 16 12 C -0.09 0.14 5.27 -19.61 -0.10 0.04 16 13 C -0.08 0.27 2.12 71.24 0.15 0.42 16 14 O -0.53 1.93 12.74 -148.98 -1.90 0.03 16 15 Si 0.97 -3.15 25.51 68.60 1.75 -1.40 16 16 H -0.26 0.32 7.11 99.48 0.71 1.03 16 17 H -0.27 -0.14 7.11 99.48 0.71 0.57 16 18 H -0.24 1.09 6.72 99.48 0.67 1.75 16 19 Si 1.10 -5.18 12.28 68.60 0.84 -4.33 16 20 C -0.45 1.08 8.65 113.37 0.98 2.06 16 21 C -0.46 1.90 8.42 113.37 0.96 2.85 16 22 C -0.46 0.92 7.73 113.37 0.88 1.80 16 23 H 0.09 -0.42 7.87 -2.91 -0.02 -0.44 16 24 H 0.12 -0.89 7.19 -2.91 -0.02 -0.91 16 25 H 0.14 -0.07 6.52 -2.91 -0.02 -0.09 16 26 H 0.15 -0.46 7.59 -2.91 -0.02 -0.48 16 27 H 0.15 -0.81 4.89 -2.91 -0.01 -0.82 16 28 H 0.12 -0.53 5.85 -2.38 -0.01 -0.55 16 29 H 0.39 -3.64 8.70 -74.05 -0.64 -4.28 16 30 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 31 H 0.06 -0.16 7.96 -2.39 -0.02 -0.18 16 32 H 0.07 -0.13 7.85 -2.39 -0.02 -0.15 16 33 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 34 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 35 H 0.07 -0.37 7.62 -2.38 -0.02 -0.39 16 36 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 37 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 38 H 0.07 -0.13 7.20 -2.39 -0.02 -0.15 16 Total: 0.00 -8.71 328.29 8.46 -0.25 By element: Atomic # 1 Polarization: -7.22 SS G_CDS: 1.16 Total: -6.06 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 4.35 Total: 12.21 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: -1.90 Total: 0.03 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 2.26 Total: -0.69 kcal Atomic # 14 Polarization: -8.33 SS G_CDS: 2.59 Total: -5.73 kcal Total: -8.71 8.46 -0.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15562958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.009 kcal (2) G-P(sol) polarization free energy of solvation -8.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds