Wall clock time and date at job start Mon Mar 8 2021 11:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32570 * 1 3 3 C 1.47799 * 120.00152 * 2 1 4 4 C 1.39518 * 120.10517 * 0.27551 * 3 2 1 5 5 C 1.37989 * 119.92744 * 180.27502 * 4 3 2 6 6 C 1.50698 * 119.92677 * 179.73158 * 5 4 3 7 7 O 1.42895 * 109.47614 * 14.72263 * 6 5 4 8 8 Si 1.86300 * 109.47338 * 134.72263 * 6 5 4 9 9 H 1.48503 * 109.46942 * 299.99993 * 8 6 5 10 10 H 1.48503 * 109.47276 * 59.99467 * 8 6 5 11 11 H 1.48494 * 109.47372 * 179.97438 * 8 6 5 12 12 C 1.38482 * 120.13969 * 359.44953 * 5 4 3 13 13 F 1.35102 * 119.88690 * 180.30156 * 12 5 4 14 14 C 1.38805 * 120.21732 * 0.27700 * 12 5 4 15 15 F 1.35094 * 119.96287 * 179.97438 * 14 12 5 16 16 C 1.38101 * 120.06818 * 0.02562 * 14 12 5 17 17 Si 1.86801 * 119.99983 * 180.02562 * 2 1 3 18 18 C 1.86301 * 109.47059 * 239.99425 * 17 2 1 19 19 C 1.86295 * 109.47263 * 359.97438 * 17 2 1 20 20 C 1.86304 * 109.47054 * 119.99862 * 17 2 1 21 21 H 1.08001 * 120.00028 * 180.02562 * 1 2 3 22 22 H 1.08000 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.03736 * 359.97438 * 4 3 2 24 24 H 1.09001 * 109.47122 * 254.72338 * 6 5 4 25 25 H 0.96698 * 114.00355 * 180.02562 * 7 6 5 26 26 H 1.08004 * 120.06892 * 179.97438 * 16 14 12 27 27 H 1.09004 * 109.46712 * 60.00205 * 18 17 2 28 28 H 1.09002 * 109.46940 * 179.97438 * 18 17 2 29 29 H 1.08997 * 109.47363 * 300.00148 * 18 17 2 30 30 H 1.09001 * 109.47356 * 59.99751 * 19 17 2 31 31 H 1.08999 * 109.47131 * 180.02562 * 19 17 2 32 32 H 1.09004 * 109.47117 * 300.00167 * 19 17 2 33 33 H 1.08997 * 109.47271 * 59.99912 * 20 17 2 34 34 H 1.09002 * 109.46955 * 180.02562 * 20 17 2 35 35 H 1.09001 * 109.46787 * 299.99773 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2800 0.0000 4 6 1.3694 2.4895 0.0058 5 6 2.0630 3.6824 0.0000 6 6 1.3119 4.9888 0.0002 7 8 -0.0536 4.7533 0.3490 8 14 2.0792 6.1462 1.2422 9 1 2.0119 5.5363 2.5945 10 1 3.4984 6.3911 0.8798 11 1 1.3395 7.4338 1.2419 12 6 3.4479 3.6814 0.0000 13 9 4.1218 4.8523 0.0005 14 6 4.1456 2.4815 0.0000 15 9 5.4966 2.4866 -0.0006 16 6 3.4603 1.2826 -0.0006 17 14 2.2597 -1.6177 -0.0007 18 6 3.3309 -1.7170 1.5203 19 6 1.0491 -3.0338 -0.0006 20 6 3.3307 -1.7158 -1.5220 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5400 0.9353 0.0004 23 1 0.2894 2.4922 0.0099 24 1 1.3613 5.4364 -0.9924 25 1 -0.5981 5.5522 0.3684 26 1 4.0033 0.3489 -0.0010 27 1 2.7042 -1.6597 2.4103 28 1 3.8755 -2.6612 1.5201 29 1 4.0392 -0.8886 1.5206 30 1 0.4221 -2.9758 -0.8903 31 1 1.5941 -3.9777 -0.0005 32 1 0.4228 -2.9762 0.8897 33 1 4.0390 -0.8873 -1.5216 34 1 3.8754 -2.6600 -1.5226 35 1 2.7040 -1.6577 -2.4119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_15737978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:15:21 Heat of formation + Delta-G solvation = -103.978341 kcal Electronic energy + Delta-G solvation = -19154.155560 eV Core-core repulsion = 15912.824336 eV Total energy + Delta-G solvation = -3241.331223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.091 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.79204 -49.83465 -40.50832 -37.81386 -34.91116 -32.74681 -30.20957 -29.49936 -28.30072 -28.24446 -27.18007 -24.60539 -22.98058 -20.50214 -19.29524 -19.08522 -17.90408 -17.58906 -17.45654 -16.60920 -16.52932 -16.00945 -15.89222 -15.55558 -14.84127 -14.59925 -14.43842 -14.02902 -13.91519 -13.68802 -13.55776 -13.34099 -13.22966 -13.12104 -12.97586 -12.85023 -12.75715 -12.61080 -12.04370 -11.57017 -11.47677 -10.86050 -10.79106 -10.71909 -10.49362 -9.79153 -9.22420 -0.50740 -0.17753 0.98923 1.22305 1.35658 1.43627 1.78791 1.86804 1.98375 2.08748 2.52653 2.59789 2.63604 3.04917 3.24561 3.40730 3.69715 3.78784 4.02192 4.26133 4.45433 4.62781 4.70165 4.76400 4.80008 4.82847 4.86393 4.88188 4.90933 4.92468 5.06293 5.13942 5.34741 5.57600 5.61963 5.65188 5.70880 5.81670 6.71571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.398 4.398 3 C -0.005 4.005 4 C -0.086 4.086 5 C -0.084 4.084 6 C -0.069 4.069 7 O -0.552 6.552 8 Si 0.956 3.044 9 H -0.278 1.278 10 H -0.252 1.252 11 H -0.241 1.241 12 C 0.023 3.977 13 F -0.128 7.128 14 C 0.067 3.933 15 F -0.136 7.136 16 C -0.142 4.142 17 Si 1.099 2.901 18 C -0.469 4.469 19 C -0.455 4.455 20 C -0.467 4.467 21 H 0.131 0.869 22 H 0.102 0.898 23 H 0.164 0.836 24 H 0.110 0.890 25 H 0.406 0.594 26 H 0.166 0.834 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.928 -2.212 -1.018 5.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.438 4.438 3 C -0.005 4.005 4 C -0.104 4.104 5 C -0.085 4.085 6 C -0.179 4.179 7 O -0.361 6.361 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.176 1.176 11 H -0.165 1.165 12 C 0.003 3.997 13 F -0.107 7.107 14 C 0.047 3.953 15 F -0.115 7.115 16 C -0.160 4.160 17 Si 1.288 2.712 18 C -0.575 4.575 19 C -0.564 4.564 20 C -0.573 4.573 21 H 0.149 0.851 22 H 0.120 0.880 23 H 0.181 0.819 24 H 0.127 0.873 25 H 0.258 0.742 26 H 0.183 0.817 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.292 -2.115 -0.384 4.800 hybrid contribution 0.368 0.855 -0.256 0.966 sum -3.924 -1.260 -0.641 4.170 Atomic orbital electron populations 1.24813 0.95487 1.03697 0.90605 1.28275 1.01813 1.07308 1.06445 1.19113 0.91551 0.94540 0.95319 1.21355 1.02151 0.89260 0.97610 1.19374 0.89827 0.97591 1.01716 1.24355 0.87452 0.98435 1.07687 1.86317 1.18266 1.38951 1.92604 0.85820 0.80433 0.78486 0.77348 1.20265 1.17595 1.16483 1.17644 0.90287 0.80786 1.11018 1.91557 1.80621 1.44266 1.94237 1.17638 0.77235 0.93741 1.06730 1.91519 1.28487 1.97315 1.94144 1.21531 0.94770 0.96893 1.02818 0.77579 0.65287 0.62439 0.65913 1.26423 1.10128 1.04653 1.16275 1.26178 1.11476 1.13559 1.05138 1.26402 1.10089 1.04665 1.16184 0.85099 0.87968 0.81907 0.87260 0.74209 0.81674 0.90995 0.90508 0.91746 0.90439 0.90603 0.90514 0.91698 0.90526 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.55 13.39 66.67 0.89 1.44 16 2 C -0.40 1.09 4.70 23.65 0.11 1.20 16 3 C 0.00 -0.01 5.84 -20.12 -0.12 -0.13 16 4 C -0.09 -0.21 8.71 22.52 0.20 -0.01 16 5 C -0.08 -0.35 5.15 -19.87 -0.10 -0.45 16 6 C -0.07 0.04 2.95 71.24 0.21 0.25 16 7 O -0.55 1.72 11.47 -148.98 -1.71 0.01 16 8 Si 0.96 1.88 26.08 68.60 1.79 3.66 16 9 H -0.28 -1.86 7.11 99.48 0.71 -1.15 16 10 H -0.25 -1.52 5.28 99.48 0.53 -0.99 16 11 H -0.24 0.08 7.11 99.48 0.71 0.78 16 12 C 0.02 0.17 6.67 22.46 0.15 0.32 16 13 F -0.13 -1.23 12.72 44.97 0.57 -0.66 16 14 C 0.07 0.49 7.30 22.37 0.16 0.65 16 15 F -0.14 -1.33 17.17 44.97 0.77 -0.56 16 16 C -0.14 -0.44 8.68 22.56 0.20 -0.24 16 17 Si 1.10 -6.50 10.79 68.60 0.74 -5.76 16 18 C -0.47 1.46 8.65 113.37 0.98 2.44 16 19 C -0.46 2.87 7.86 113.37 0.89 3.76 16 20 C -0.47 1.62 8.65 113.37 0.98 2.60 16 21 H 0.13 -1.17 7.05 -2.91 -0.02 -1.19 16 22 H 0.10 -0.54 6.03 -2.91 -0.02 -0.56 16 23 H 0.16 -0.05 5.23 -2.91 -0.02 -0.07 16 24 H 0.11 -0.50 7.96 -2.39 -0.02 -0.52 16 25 H 0.41 -4.89 8.74 -74.06 -0.65 -5.53 16 26 H 0.17 -0.15 3.70 -2.91 -0.01 -0.16 16 27 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 28 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 29 H 0.06 -0.12 6.57 -2.39 -0.02 -0.14 16 30 H 0.08 -0.54 7.96 -2.39 -0.02 -0.56 16 31 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 32 H 0.08 -0.52 7.96 -2.39 -0.02 -0.54 16 33 H 0.06 -0.15 6.57 -2.39 -0.02 -0.16 16 34 H 0.08 -0.32 7.96 -2.39 -0.02 -0.33 16 35 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 Total: 0.00 -11.62 293.91 7.76 -3.86 By element: Atomic # 1 Polarization: -13.45 SS G_CDS: 1.04 Total: -12.40 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 4.55 Total: 11.84 kcal Atomic # 8 Polarization: 1.72 SS G_CDS: -1.71 Total: 0.01 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 1.34 Total: -1.22 kcal Atomic # 14 Polarization: -4.63 SS G_CDS: 2.53 Total: -2.10 kcal Total: -11.62 7.76 -3.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15737978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.117 kcal (2) G-P(sol) polarization free energy of solvation -11.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds