Wall clock time and date at job start Mon Mar 8 2021 11:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32565 * 1 3 3 C 1.47822 * 119.99928 * 2 1 4 4 C 1.39513 * 120.13761 * 46.50902 * 3 2 1 5 5 C 1.37990 * 119.85523 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.92965 * 179.97438 * 5 4 3 7 7 O 1.42893 * 109.47026 * 299.99618 * 6 5 4 8 8 Si 1.86305 * 109.47080 * 179.97438 * 6 5 4 9 9 H 1.48495 * 109.47149 * 180.02562 * 8 6 5 10 10 H 1.48503 * 109.46977 * 299.99975 * 8 6 5 11 11 H 1.48494 * 109.47066 * 59.99974 * 8 6 5 12 12 C 1.38320 * 120.14259 * 0.26716 * 5 4 3 13 13 C 1.38369 * 120.28339 * 359.45702 * 12 5 4 14 14 N 1.48005 * 119.92909 * 180.27112 * 13 12 5 15 15 O 1.21802 * 119.99930 * 180.27335 * 14 13 12 16 16 O 1.21801 * 120.00228 * 0.27052 * 14 13 12 17 17 C 1.37955 * 120.14262 * 0.54736 * 13 12 5 18 18 Si 1.86796 * 119.99942 * 180.02562 * 2 1 3 19 19 C 1.86304 * 109.46875 * 181.51912 * 18 2 1 20 20 C 1.86297 * 109.47240 * 301.51961 * 18 2 1 21 21 C 1.86300 * 109.47157 * 61.52287 * 18 2 1 22 22 H 1.07995 * 120.00165 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.99850 * 359.97438 * 1 2 3 24 24 H 1.08006 * 120.07311 * 0.03746 * 4 3 2 25 25 H 1.09001 * 109.46967 * 59.99789 * 6 5 4 26 26 H 0.96699 * 114.00520 * 300.00421 * 7 6 5 27 27 H 1.08003 * 119.85945 * 179.70127 * 12 5 4 28 28 H 1.07994 * 120.07205 * 179.75114 * 17 13 12 29 29 H 1.08996 * 109.47158 * 53.65520 * 19 18 2 30 30 H 1.09002 * 109.47032 * 173.64821 * 19 18 2 31 31 H 1.08996 * 109.47645 * 293.64718 * 19 18 2 32 32 H 1.09000 * 109.47045 * 59.99874 * 20 18 2 33 33 H 1.09000 * 109.47410 * 180.02562 * 20 18 2 34 34 H 1.09003 * 109.47237 * 300.00008 * 20 18 2 35 35 H 1.08999 * 109.47292 * 59.99906 * 21 18 2 36 36 H 1.09000 * 109.47019 * 180.02562 * 21 18 2 37 37 H 1.09004 * 109.47016 * 299.99457 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 1.6958 2.3020 0.8753 5 6 2.3895 3.4949 0.8700 6 6 1.9920 4.6000 1.8144 7 8 0.6403 4.9845 1.5557 8 14 3.1143 6.0656 1.5626 9 1 2.7230 7.1543 2.4936 10 1 4.5188 5.6656 1.8319 11 1 2.9959 6.5449 0.1622 12 6 3.4449 3.6807 -0.0044 13 6 3.8194 2.6692 -0.8711 14 7 4.9538 2.8743 -1.7994 15 8 5.2814 1.9866 -2.5663 16 8 5.5598 3.9309 -1.7964 17 6 3.1341 1.4719 -0.8759 18 14 2.2596 -1.6177 -0.0007 19 6 4.0907 -1.2775 0.0460 20 6 1.7749 -2.6153 1.4961 21 6 1.8448 -2.5736 -1.5451 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5400 0.9353 0.0004 24 1 0.8692 2.1596 1.5558 25 1 2.0793 4.2483 2.8425 26 1 0.4886 5.3085 0.6573 27 1 3.9816 4.6180 -0.0081 28 1 3.4248 0.6847 -1.5556 29 1 4.3175 -0.6238 0.8882 30 1 4.6320 -2.2169 0.1593 31 1 4.3942 -0.7931 -0.8820 32 1 0.7036 -2.8143 1.4688 33 1 2.3202 -3.5591 1.4960 34 1 2.0176 -2.0561 2.3997 35 1 2.1284 -1.9899 -2.4208 36 1 2.3895 -3.5177 -1.5453 37 1 0.7735 -2.7726 -1.5724 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_15738102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:18:39 Heat of formation + Delta-G solvation = -27.312285 kcal Electronic energy + Delta-G solvation = -20109.132183 eV Core-core repulsion = 16979.016965 eV Total energy + Delta-G solvation = -3130.115218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.40511 -41.03048 -37.97759 -37.77968 -35.39955 -33.39580 -31.24958 -29.50355 -28.36531 -28.28987 -27.79510 -27.08933 -24.50624 -22.97100 -21.05731 -19.87110 -19.55523 -18.74764 -18.06674 -17.81321 -16.75073 -16.66185 -16.26837 -15.58735 -15.09037 -14.75963 -14.12261 -14.01280 -13.94530 -13.79819 -13.47975 -13.40956 -13.19712 -13.16549 -13.07566 -12.95749 -12.84160 -12.60986 -12.44053 -12.40574 -12.22447 -11.93352 -11.59902 -11.04088 -10.83978 -10.80372 -10.50695 -10.42910 -9.70527 -1.39668 -0.42794 0.11924 0.20708 0.99220 1.06808 1.33060 1.39948 1.71389 1.81562 1.91634 2.06498 2.31022 2.62668 3.06134 3.20176 3.37898 3.65466 3.69705 3.74639 3.99166 4.18304 4.43196 4.54842 4.71549 4.75638 4.77058 4.82816 4.85190 4.87749 4.88389 4.89533 4.90507 4.97866 5.23767 5.41662 5.53631 5.64118 5.66892 5.67546 6.31317 6.55383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.400 4.400 3 C -0.020 4.020 4 C -0.032 4.032 5 C -0.106 4.106 6 C -0.061 4.061 7 O -0.540 6.540 8 Si 0.949 3.051 9 H -0.258 1.258 10 H -0.261 1.261 11 H -0.258 1.258 12 C -0.085 4.085 13 C -0.048 4.048 14 N 0.028 4.972 15 O -0.165 6.165 16 O -0.193 6.193 17 C -0.058 4.058 18 Si 1.112 2.888 19 C -0.475 4.475 20 C -0.457 4.457 21 C -0.463 4.463 22 H 0.131 0.869 23 H 0.103 0.897 24 H 0.171 0.829 25 H 0.148 0.852 26 H 0.391 0.609 27 H 0.144 0.856 28 H 0.164 0.836 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.333 -3.229 3.652 7.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.440 4.440 3 C -0.020 4.020 4 C -0.050 4.050 5 C -0.107 4.107 6 C -0.173 4.173 7 O -0.347 6.347 8 Si 0.774 3.226 9 H -0.182 1.182 10 H -0.186 1.186 11 H -0.182 1.182 12 C -0.104 4.104 13 C -0.131 4.131 14 N 0.543 4.457 15 O -0.382 6.382 16 O -0.403 6.403 17 C -0.077 4.077 18 Si 1.300 2.700 19 C -0.581 4.581 20 C -0.564 4.564 21 C -0.570 4.570 22 H 0.149 0.851 23 H 0.121 0.879 24 H 0.188 0.812 25 H 0.166 0.834 26 H 0.241 0.759 27 H 0.162 0.838 28 H 0.182 0.818 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.403 -2.667 4.583 8.313 hybrid contribution 0.712 0.245 -1.070 1.308 sum -5.691 -2.421 3.513 7.113 Atomic orbital electron populations 1.24641 0.94835 1.03796 0.90107 1.28046 1.01630 1.06498 1.07800 1.19159 0.93716 0.95308 0.93855 1.21960 0.97395 0.89686 0.95938 1.20385 0.94999 0.98045 0.97287 1.24805 0.90663 0.99969 1.01853 1.86525 1.24730 1.85827 1.37624 0.85654 0.78049 0.78015 0.80846 1.18207 1.18579 1.18165 1.21057 0.97399 0.98405 0.93519 1.21022 0.93447 0.99947 0.98711 1.43986 1.01555 0.99761 1.00395 1.94527 1.71072 1.36710 1.35898 1.94547 1.54569 1.15378 1.75758 1.21453 0.93176 0.94694 0.98340 0.77380 0.63582 0.62267 0.66808 1.26587 1.22349 1.05200 1.03937 1.26212 1.06256 1.09112 1.14859 1.26289 1.05933 1.08937 1.15797 0.85127 0.87873 0.81182 0.83414 0.75916 0.83838 0.81849 0.91915 0.90660 0.91687 0.90285 0.90960 0.91179 0.91410 0.90893 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.91 13.31 66.67 0.89 1.80 16 2 C -0.40 2.80 4.41 23.66 0.10 2.91 16 3 C -0.02 0.07 5.25 -20.12 -0.11 -0.04 16 4 C -0.03 0.16 8.89 22.52 0.20 0.36 16 5 C -0.11 0.35 5.38 -19.90 -0.11 0.24 16 6 C -0.06 0.35 2.82 71.24 0.20 0.55 16 7 O -0.54 2.93 12.76 -148.98 -1.90 1.03 16 8 Si 0.95 -1.87 25.07 68.60 1.72 -0.15 16 9 H -0.26 -0.11 7.11 99.48 0.71 0.59 16 10 H -0.26 -0.22 7.11 99.48 0.71 0.49 16 11 H -0.26 0.02 7.11 99.48 0.71 0.73 16 12 C -0.08 -0.15 8.18 22.32 0.18 0.03 16 13 C -0.05 -0.24 6.84 36.34 0.25 0.01 16 14 N 0.03 0.32 4.45 -46.56 -0.21 0.11 16 15 O -0.16 -2.05 18.44 18.88 0.35 -1.70 16 16 O -0.19 -2.70 18.44 18.88 0.35 -2.35 16 17 C -0.06 -0.04 7.72 22.52 0.17 0.14 16 18 Si 1.11 -8.81 11.67 68.60 0.80 -8.01 16 19 C -0.48 1.45 7.69 113.37 0.87 2.32 16 20 C -0.46 3.17 8.65 113.37 0.98 4.15 16 21 C -0.46 2.76 8.65 113.37 0.98 3.74 16 22 H 0.13 -1.70 7.72 -2.91 -0.02 -1.72 16 23 H 0.10 -1.02 7.84 -2.91 -0.02 -1.05 16 24 H 0.17 -1.57 7.94 -2.91 -0.02 -1.60 16 25 H 0.15 -1.37 7.96 -2.39 -0.02 -1.39 16 26 H 0.39 -4.27 8.70 -74.06 -0.64 -4.92 16 27 H 0.14 0.32 4.40 -2.91 -0.01 0.31 16 28 H 0.16 -0.15 5.46 -2.91 -0.02 -0.16 16 29 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16 30 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.06 -0.10 6.23 -2.39 -0.01 -0.11 16 32 H 0.08 -0.65 7.96 -2.39 -0.02 -0.67 16 33 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 34 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 35 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 37 H 0.08 -0.57 7.96 -2.39 -0.02 -0.58 16 Total: 0.00 -13.92 319.93 6.92 -7.00 By element: Atomic # 1 Polarization: -13.35 SS G_CDS: 1.19 Total: -12.15 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 4.62 Total: 16.22 kcal Atomic # 7 Polarization: 0.32 SS G_CDS: -0.21 Total: 0.11 kcal Atomic # 8 Polarization: -1.81 SS G_CDS: -1.21 Total: -3.01 kcal Atomic # 14 Polarization: -10.68 SS G_CDS: 2.52 Total: -8.16 kcal Total: -13.92 6.92 -7.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15738102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.307 kcal (2) G-P(sol) polarization free energy of solvation -13.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds