Wall clock time and date at job start Mon Mar 8 2021 11:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32579 * 1 3 3 C 1.47792 * 120.00044 * 2 1 4 4 C 1.39591 * 120.12920 * 294.58407 * 3 2 1 5 5 F 1.35101 * 120.12107 * 0.03082 * 4 3 2 6 6 C 1.38724 * 119.75491 * 179.74431 * 4 3 2 7 7 O 1.35963 * 119.99014 * 180.27762 * 6 4 3 8 8 C 1.42899 * 117.00296 * 270.25858 * 7 6 4 9 9 C 1.38692 * 120.01621 * 0.53579 * 6 4 3 10 10 C 1.50700 * 119.87266 * 179.76456 * 9 6 4 11 11 O 1.42893 * 109.47219 * 74.72554 * 10 9 6 12 12 Si 1.86308 * 109.47168 * 194.72595 * 10 9 6 13 13 H 1.48498 * 109.46922 * 299.99934 * 12 10 9 14 14 H 1.48495 * 109.46819 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46816 * 59.99758 * 12 10 9 16 16 C 1.38343 * 120.25781 * 359.48871 * 9 6 4 17 17 C 1.37947 * 120.23906 * 0.22989 * 16 9 6 18 18 Si 1.86800 * 119.99883 * 180.02562 * 2 1 3 19 19 C 1.86306 * 109.46680 * 275.08638 * 18 2 1 20 20 C 1.86305 * 109.47252 * 35.08413 * 18 2 1 21 21 C 1.86299 * 109.47437 * 155.08925 * 18 2 1 22 22 H 1.07994 * 119.99953 * 185.04985 * 1 2 3 23 23 H 1.07997 * 119.99680 * 5.05065 * 1 2 3 24 24 H 1.09007 * 109.47498 * 59.99857 * 8 7 6 25 25 H 1.08998 * 109.47511 * 180.02562 * 8 7 6 26 26 H 1.08999 * 109.47250 * 300.00306 * 8 7 6 27 27 H 1.09003 * 109.46768 * 314.72276 * 10 9 6 28 28 H 0.96699 * 114.00308 * 59.99884 * 11 10 9 29 29 H 1.08000 * 119.88107 * 180.25260 * 16 9 6 30 30 H 1.08001 * 120.00304 * 180.02562 * 17 16 9 31 31 H 1.09004 * 109.47240 * 60.00357 * 19 18 2 32 32 H 1.09000 * 109.46846 * 179.97438 * 19 18 2 33 33 H 1.08997 * 109.47370 * 299.99832 * 19 18 2 34 34 H 1.08996 * 109.46869 * 60.00763 * 20 18 2 35 35 H 1.09001 * 109.46480 * 180.02562 * 20 18 2 36 36 H 1.09001 * 109.47006 * 300.00330 * 20 18 2 37 37 H 1.08995 * 109.47146 * 55.10766 * 21 18 2 38 38 H 1.08993 * 109.47186 * 175.11114 * 21 18 2 39 39 H 1.09003 * 109.46972 * 295.10892 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3258 0.0000 0.0000 3 6 2.0648 1.2799 0.0000 4 6 1.9801 2.1379 -1.0979 5 9 1.2218 1.8016 -2.1642 6 6 2.6728 3.3398 -1.0874 7 8 2.5892 4.1816 -2.1518 8 6 3.5498 4.0057 -3.1951 9 6 3.4547 3.6804 0.0063 10 6 4.2100 4.9845 0.0120 11 8 3.2988 6.0617 0.2384 12 14 5.4876 4.9563 1.3677 13 1 4.8147 4.7683 2.6780 14 1 6.2322 6.2410 1.3728 15 1 6.4344 3.8368 1.1323 16 6 3.5395 2.8304 1.0944 17 6 2.8505 1.6352 1.0977 18 14 2.2598 -1.6178 -0.0007 19 6 2.4353 -2.2341 1.7486 20 6 1.3255 -2.8738 -1.0109 21 6 3.9499 -1.3588 -0.7404 22 1 -0.5400 -0.9316 0.0823 23 1 -0.5399 0.9317 -0.0823 24 1 3.4577 3.0012 -3.6082 25 1 3.3715 4.7398 -3.9808 26 1 4.5532 4.1421 -2.7919 27 1 4.7039 5.1224 -0.9499 28 1 2.8226 6.0041 1.0781 29 1 4.1469 3.1036 1.9446 30 1 2.9191 0.9747 1.9494 31 1 1.4464 -2.3857 2.1815 32 1 2.9799 -3.1783 1.7482 33 1 2.9819 -1.4993 2.3397 34 1 1.2228 -2.5132 -2.0343 35 1 1.8703 -3.8179 -1.0108 36 1 0.3366 -3.0253 -0.5780 37 1 4.4638 -0.5623 -0.2024 38 1 4.5260 -2.2807 -0.6619 39 1 3.8487 -1.0819 -1.7898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_15738144.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:20:43 Heat of formation + Delta-G solvation = -112.803383 kcal Electronic energy + Delta-G solvation = -21127.174554 eV Core-core repulsion = 17880.694813 eV Total energy + Delta-G solvation = -3246.479741 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.75376 -41.10939 -38.60859 -37.68965 -34.83949 -31.34382 -31.20990 -29.59275 -28.50969 -28.48514 -28.06081 -26.56821 -23.66594 -23.17611 -20.93202 -18.76448 -18.50016 -18.14591 -17.30692 -16.83437 -16.42237 -16.12614 -15.77932 -15.67502 -15.59024 -15.26438 -14.69209 -14.32991 -14.25440 -14.04334 -13.95809 -13.62354 -13.43987 -13.39405 -13.33903 -13.17330 -13.13463 -13.01330 -12.59623 -12.25832 -12.09999 -11.69412 -11.42025 -11.26968 -10.95611 -10.94815 -10.42092 -10.30227 -9.68507 -9.49504 -0.16293 -0.01282 0.92295 1.05643 1.33812 1.44927 1.61292 1.79027 1.83913 2.01197 2.23768 2.53558 2.73629 3.14381 3.49179 3.58646 3.70089 3.94469 4.02325 4.24599 4.32266 4.32845 4.52997 4.60740 4.64994 4.67057 4.69105 4.70364 4.72100 4.72614 4.74808 4.86382 4.88745 5.09726 5.15460 5.28133 5.39256 5.46912 5.47966 5.53586 5.69080 6.43797 6.55825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.383 4.383 3 C -0.044 4.044 4 C 0.079 3.921 5 F -0.126 7.126 6 C 0.095 3.905 7 O -0.320 6.320 8 C 0.032 3.968 9 C -0.123 4.123 10 C -0.074 4.074 11 O -0.528 6.528 12 Si 0.947 3.053 13 H -0.248 1.248 14 H -0.250 1.250 15 H -0.246 1.246 16 C -0.121 4.121 17 C -0.092 4.092 18 Si 1.052 2.948 19 C -0.446 4.446 20 C -0.449 4.449 21 C -0.447 4.447 22 H 0.110 0.890 23 H 0.094 0.906 24 H 0.048 0.952 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.113 0.887 28 H 0.375 0.625 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.007 -2.732 2.170 4.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.424 4.424 3 C -0.045 4.045 4 C 0.060 3.940 5 F -0.105 7.105 6 C 0.050 3.950 7 O -0.236 6.236 8 C -0.062 4.062 9 C -0.124 4.124 10 C -0.185 4.185 11 O -0.333 6.333 12 Si 0.769 3.231 13 H -0.172 1.172 14 H -0.173 1.173 15 H -0.170 1.170 16 C -0.138 4.138 17 C -0.110 4.110 18 Si 1.243 2.757 19 C -0.554 4.554 20 C -0.557 4.557 21 C -0.555 4.555 22 H 0.128 0.872 23 H 0.113 0.887 24 H 0.067 0.933 25 H 0.119 0.881 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.222 0.778 29 H 0.153 0.847 30 H 0.160 0.840 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.659 -2.345 2.153 4.148 hybrid contribution -0.710 -0.231 -0.213 0.776 sum 1.949 -2.576 1.940 3.768 Atomic orbital electron populations 1.24299 0.95335 1.02202 0.92703 1.27898 1.01036 1.07306 1.06113 1.18993 0.98578 0.94225 0.92737 1.18234 0.96218 0.93587 0.86005 1.91500 1.73200 1.92175 1.53597 1.18368 0.97894 0.88918 0.89840 1.86145 1.54649 1.54241 1.28589 1.23090 0.91443 1.02373 0.89271 1.20556 0.99131 0.98066 0.94662 1.24942 0.98258 0.84631 1.10637 1.86583 1.58698 1.44200 1.43782 0.85751 0.78125 0.81746 0.77458 1.17182 1.17349 1.16967 1.21037 1.00438 0.94538 0.97836 1.21079 0.95737 0.96709 0.97499 0.78335 0.66280 0.63188 0.67909 1.26099 1.04794 1.06247 1.18212 1.26138 1.08499 1.11626 1.09412 1.26086 1.17436 1.04881 1.07109 0.87235 0.88724 0.93342 0.88148 0.93235 0.86877 0.77840 0.84719 0.84040 0.91050 0.90906 0.91088 0.91006 0.90798 0.91115 0.91075 0.90925 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.03 13.38 28.83 0.39 0.42 16 2 C -0.38 0.08 3.90 -37.58 -0.15 -0.07 16 3 C -0.04 -0.05 4.91 -104.98 -0.51 -0.57 16 4 C 0.08 0.25 7.24 -38.90 -0.28 -0.03 16 5 F -0.13 -0.58 16.48 2.25 0.04 -0.54 16 6 C 0.09 0.30 5.69 -39.23 -0.22 0.08 16 7 O -0.32 -1.27 9.64 -19.62 -0.19 -1.46 16 8 C 0.03 0.02 10.90 101.05 1.10 1.12 16 9 C -0.12 -0.15 5.28 -104.42 -0.55 -0.70 16 10 C -0.07 -0.02 2.36 36.01 0.09 0.06 16 11 O -0.53 -0.76 12.88 -35.23 -0.45 -1.21 16 12 Si 0.95 -0.88 25.48 -169.99 -4.33 -5.21 16 13 H -0.25 0.35 6.73 56.52 0.38 0.73 16 14 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 15 H -0.25 0.16 7.11 56.52 0.40 0.56 16 16 C -0.12 0.03 8.64 -39.65 -0.34 -0.31 16 17 C -0.09 0.03 9.41 -39.18 -0.37 -0.34 16 18 Si 1.05 -2.42 12.09 -169.99 -2.06 -4.48 16 19 C -0.45 1.01 8.65 101.05 0.87 1.88 16 20 C -0.45 0.70 8.65 101.05 0.87 1.57 16 21 C -0.45 0.54 8.65 101.05 0.87 1.41 16 22 H 0.11 -0.25 7.59 -52.49 -0.40 -0.65 16 23 H 0.09 0.06 8.05 -52.49 -0.42 -0.36 16 24 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 25 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.05 -0.04 7.09 -51.93 -0.37 -0.41 16 27 H 0.11 0.00 6.54 -51.93 -0.34 -0.34 16 28 H 0.37 -0.76 8.70 45.56 0.40 -0.36 16 29 H 0.14 -0.29 4.86 -52.49 -0.26 -0.55 16 30 H 0.14 -0.40 8.06 -52.49 -0.42 -0.82 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 33 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 34 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 36 H 0.07 -0.13 7.83 -51.93 -0.41 -0.54 16 37 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 38 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 39 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 LS Contribution 333.87 15.07 5.03 5.03 Total: 0.00 -5.59 333.87 -5.38 -10.97 By element: Atomic # 1 Polarization: -2.45 SS G_CDS: -5.19 Total: -7.63 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 1.77 Total: 4.53 kcal Atomic # 8 Polarization: -2.03 SS G_CDS: -0.64 Total: -2.67 kcal Atomic # 9 Polarization: -0.58 SS G_CDS: 0.04 Total: -0.54 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: -6.39 Total: -9.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -5.59 -5.38 -10.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15738144.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.835 kcal (2) G-P(sol) polarization free energy of solvation -5.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds