Wall clock time and date at job start Mon Mar 8 2021 11:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32579 * 1 3 3 C 1.47792 * 120.00044 * 2 1 4 4 C 1.39591 * 120.12920 * 294.58407 * 3 2 1 5 5 F 1.35101 * 120.12107 * 0.03082 * 4 3 2 6 6 C 1.38724 * 119.75491 * 179.74431 * 4 3 2 7 7 O 1.35963 * 119.99014 * 180.27762 * 6 4 3 8 8 C 1.42899 * 117.00296 * 270.25858 * 7 6 4 9 9 C 1.38692 * 120.01621 * 0.53579 * 6 4 3 10 10 C 1.50700 * 119.87266 * 179.76456 * 9 6 4 11 11 O 1.42893 * 109.47219 * 74.72554 * 10 9 6 12 12 Si 1.86308 * 109.47168 * 194.72595 * 10 9 6 13 13 H 1.48498 * 109.46922 * 299.99934 * 12 10 9 14 14 H 1.48495 * 109.46819 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46816 * 59.99758 * 12 10 9 16 16 C 1.38343 * 120.25781 * 359.48871 * 9 6 4 17 17 C 1.37947 * 120.23906 * 0.22989 * 16 9 6 18 18 Si 1.86800 * 119.99883 * 180.02562 * 2 1 3 19 19 C 1.86306 * 109.46680 * 275.08638 * 18 2 1 20 20 C 1.86305 * 109.47252 * 35.08413 * 18 2 1 21 21 C 1.86299 * 109.47437 * 155.08925 * 18 2 1 22 22 H 1.07994 * 119.99953 * 185.04985 * 1 2 3 23 23 H 1.07997 * 119.99680 * 5.05065 * 1 2 3 24 24 H 1.09007 * 109.47498 * 59.99857 * 8 7 6 25 25 H 1.08998 * 109.47511 * 180.02562 * 8 7 6 26 26 H 1.08999 * 109.47250 * 300.00306 * 8 7 6 27 27 H 1.09003 * 109.46768 * 314.72276 * 10 9 6 28 28 H 0.96699 * 114.00308 * 59.99884 * 11 10 9 29 29 H 1.08000 * 119.88107 * 180.25260 * 16 9 6 30 30 H 1.08001 * 120.00304 * 180.02562 * 17 16 9 31 31 H 1.09004 * 109.47240 * 60.00357 * 19 18 2 32 32 H 1.09000 * 109.46846 * 179.97438 * 19 18 2 33 33 H 1.08997 * 109.47370 * 299.99832 * 19 18 2 34 34 H 1.08996 * 109.46869 * 60.00763 * 20 18 2 35 35 H 1.09001 * 109.46480 * 180.02562 * 20 18 2 36 36 H 1.09001 * 109.47006 * 300.00330 * 20 18 2 37 37 H 1.08995 * 109.47146 * 55.10766 * 21 18 2 38 38 H 1.08993 * 109.47186 * 175.11114 * 21 18 2 39 39 H 1.09003 * 109.46972 * 295.10892 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3258 0.0000 0.0000 3 6 2.0648 1.2799 0.0000 4 6 1.9801 2.1379 -1.0979 5 9 1.2218 1.8016 -2.1642 6 6 2.6728 3.3398 -1.0874 7 8 2.5892 4.1816 -2.1518 8 6 3.5498 4.0057 -3.1951 9 6 3.4547 3.6804 0.0063 10 6 4.2100 4.9845 0.0120 11 8 3.2988 6.0617 0.2384 12 14 5.4876 4.9563 1.3677 13 1 4.8147 4.7683 2.6780 14 1 6.2322 6.2410 1.3728 15 1 6.4344 3.8368 1.1323 16 6 3.5395 2.8304 1.0944 17 6 2.8505 1.6352 1.0977 18 14 2.2598 -1.6178 -0.0007 19 6 2.4353 -2.2341 1.7486 20 6 1.3255 -2.8738 -1.0109 21 6 3.9499 -1.3588 -0.7404 22 1 -0.5400 -0.9316 0.0823 23 1 -0.5399 0.9317 -0.0823 24 1 3.4577 3.0012 -3.6082 25 1 3.3715 4.7398 -3.9808 26 1 4.5532 4.1421 -2.7919 27 1 4.7039 5.1224 -0.9499 28 1 2.8226 6.0041 1.0781 29 1 4.1469 3.1036 1.9446 30 1 2.9191 0.9747 1.9494 31 1 1.4464 -2.3857 2.1815 32 1 2.9799 -3.1783 1.7482 33 1 2.9819 -1.4993 2.3397 34 1 1.2228 -2.5132 -2.0343 35 1 1.8703 -3.8179 -1.0108 36 1 0.3366 -3.0253 -0.5780 37 1 4.4638 -0.5623 -0.2024 38 1 4.5260 -2.2807 -0.6619 39 1 3.8487 -1.0819 -1.7898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_15738144.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:20:42 Heat of formation + Delta-G solvation = -105.881330 kcal Electronic energy + Delta-G solvation = -21126.874392 eV Core-core repulsion = 17880.694813 eV Total energy + Delta-G solvation = -3246.179579 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.98545 -41.18413 -38.71068 -37.72830 -34.83202 -31.35682 -31.26725 -29.43037 -28.40030 -28.28881 -28.10424 -26.58535 -23.74415 -23.19896 -20.94792 -18.84663 -18.58571 -18.25243 -17.41000 -16.95747 -16.45281 -16.16643 -15.86915 -15.72665 -15.59792 -15.33515 -14.65341 -14.36411 -14.10072 -13.91777 -13.81150 -13.58469 -13.46241 -13.27793 -13.18949 -13.10438 -13.02104 -12.92982 -12.64055 -12.16102 -12.09221 -11.65982 -11.36974 -11.28421 -10.92798 -10.80711 -10.41028 -10.24076 -9.77948 -9.52945 -0.20063 -0.09178 0.98564 1.11138 1.43753 1.53124 1.73644 1.90532 1.95348 2.17307 2.25556 2.64217 2.67802 3.07318 3.47773 3.62518 3.74396 3.93880 4.03674 4.23190 4.27651 4.30774 4.51783 4.67042 4.70239 4.78350 4.79560 4.81313 4.83269 4.85863 4.88285 4.93364 4.94837 5.09682 5.12348 5.29694 5.49901 5.55031 5.63588 5.70320 5.73584 6.31977 6.68446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.396 4.396 3 C -0.048 4.048 4 C 0.049 3.951 5 F -0.144 7.144 6 C 0.075 3.925 7 O -0.345 6.345 8 C 0.027 3.973 9 C -0.129 4.129 10 C -0.085 4.085 11 O -0.549 6.549 12 Si 0.988 3.012 13 H -0.232 1.232 14 H -0.274 1.274 15 H -0.246 1.246 16 C -0.115 4.115 17 C -0.091 4.091 18 Si 1.109 2.891 19 C -0.449 4.449 20 C -0.463 4.463 21 C -0.462 4.462 22 H 0.130 0.870 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.111 0.889 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.388 0.612 29 H 0.160 0.840 30 H 0.172 0.828 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -3.664 3.963 6.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.434 4.434 3 C -0.049 4.049 4 C 0.029 3.971 5 F -0.122 7.122 6 C 0.030 3.970 7 O -0.262 6.262 8 C -0.067 4.067 9 C -0.130 4.130 10 C -0.194 4.194 11 O -0.356 6.356 12 Si 0.808 3.192 13 H -0.155 1.155 14 H -0.199 1.199 15 H -0.170 1.170 16 C -0.133 4.133 17 C -0.109 4.109 18 Si 1.296 2.704 19 C -0.558 4.558 20 C -0.570 4.570 21 C -0.569 4.569 22 H 0.148 0.852 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.129 0.871 26 H 0.081 0.919 27 H 0.126 0.874 28 H 0.236 0.764 29 H 0.177 0.823 30 H 0.190 0.810 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.342 -3.271 3.929 6.108 hybrid contribution -0.936 0.098 -0.824 1.251 sum 2.407 -3.173 3.105 5.050 Atomic orbital electron populations 1.24434 0.95536 1.02460 0.93011 1.28425 1.01301 1.07844 1.05818 1.19278 0.98716 0.94368 0.92498 1.18582 0.97272 0.94632 0.86591 1.91441 1.73848 1.92392 1.54561 1.18658 0.98877 0.89088 0.90352 1.86085 1.55838 1.54865 1.29440 1.23248 0.91720 1.02627 0.89090 1.20720 0.98995 0.98707 0.94541 1.25222 0.98499 0.83924 1.11709 1.86540 1.59276 1.44761 1.45024 0.85191 0.76700 0.80288 0.76981 1.15496 1.19891 1.16958 1.21346 1.00020 0.94079 0.97816 1.21479 0.94637 0.97049 0.97697 0.77503 0.64259 0.61047 0.67588 1.26113 1.05235 1.06659 1.17759 1.26306 1.09216 1.12322 1.09176 1.26282 1.18906 1.05181 1.06540 0.85179 0.90392 0.93585 0.87075 0.91898 0.87365 0.76363 0.82297 0.81013 0.90716 0.90526 0.90284 0.91983 0.90387 0.90579 0.91030 0.90313 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.00 13.38 66.67 0.89 0.89 16 2 C -0.40 0.09 3.90 23.65 0.09 0.19 16 3 C -0.05 -0.14 4.91 -20.10 -0.10 -0.23 16 4 C 0.05 0.41 7.24 22.71 0.16 0.57 16 5 F -0.14 -1.72 16.48 44.97 0.74 -0.98 16 6 C 0.07 0.60 5.69 22.49 0.13 0.73 16 7 O -0.35 -3.52 9.64 -93.13 -0.90 -4.42 16 8 C 0.03 0.09 10.90 113.37 1.24 1.32 16 9 C -0.13 -0.37 5.28 -19.73 -0.10 -0.47 16 10 C -0.08 -0.09 2.36 71.24 0.17 0.08 16 11 O -0.55 -2.00 12.88 -148.98 -1.92 -3.92 16 12 Si 0.99 -2.78 25.48 68.60 1.75 -1.04 16 13 H -0.23 1.26 6.73 99.48 0.67 1.93 16 14 H -0.27 -0.31 7.11 99.48 0.71 0.40 16 15 H -0.25 0.70 7.11 99.48 0.71 1.41 16 16 C -0.11 0.18 8.64 22.23 0.19 0.37 16 17 C -0.09 0.16 9.41 22.53 0.21 0.37 16 18 Si 1.11 -5.85 12.09 68.60 0.83 -5.02 16 19 C -0.45 2.92 8.65 113.37 0.98 3.90 16 20 C -0.46 1.55 8.65 113.37 0.98 2.53 16 21 C -0.46 1.16 8.65 113.37 0.98 2.14 16 22 H 0.13 -0.63 7.59 -2.91 -0.02 -0.66 16 23 H 0.08 0.24 8.05 -2.91 -0.02 0.21 16 24 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 25 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 26 H 0.06 -0.01 7.09 -2.39 -0.02 -0.03 16 27 H 0.11 0.12 6.54 -2.39 -0.02 0.11 16 28 H 0.39 -1.42 8.70 -74.06 -0.64 -2.06 16 29 H 0.16 -1.08 4.86 -2.91 -0.01 -1.10 16 30 H 0.17 -1.42 8.06 -2.91 -0.02 -1.45 16 31 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 32 H 0.08 -0.51 7.96 -2.39 -0.02 -0.53 16 33 H 0.08 -0.61 7.96 -2.39 -0.02 -0.63 16 34 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 35 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 36 H 0.08 -0.34 7.83 -2.39 -0.02 -0.35 16 37 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 38 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 39 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 Total: 0.00 -14.56 333.87 7.44 -7.12 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: 1.11 Total: -4.12 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.82 Total: 12.38 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -2.82 Total: -8.34 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.74 Total: -0.98 kcal Atomic # 14 Polarization: -8.64 SS G_CDS: 2.58 Total: -6.06 kcal Total: -14.56 7.44 -7.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15738144.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.765 kcal (2) G-P(sol) polarization free energy of solvation -14.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds