Wall clock time and date at job start Mon Mar 8 2021 11:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32783 * 1 3 3 C 1.47498 * 120.00043 * 2 1 4 4 C 1.41683 * 120.37016 * 65.92430 * 3 2 1 5 5 C 1.40182 * 121.25685 * 0.02562 * 4 3 2 6 6 C 1.36237 * 119.68094 * 179.97438 * 5 4 3 7 7 C 1.39307 * 120.94140 * 0.02562 * 6 5 4 8 8 C 1.36122 * 120.95352 * 359.97438 * 7 6 5 9 9 C 1.40585 * 119.65720 * 359.97438 * 8 7 6 10 10 C 1.40546 * 121.17282 * 180.08263 * 9 8 7 11 11 C 1.36254 * 120.10795 * 179.90594 * 10 9 8 12 12 C 1.50700 * 119.41042 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.47214 * 244.99729 * 12 11 10 14 14 Si 1.86298 * 109.47407 * 5.00108 * 12 11 10 15 15 H 1.48495 * 109.47334 * 299.99899 * 14 12 11 16 16 H 1.48505 * 109.47025 * 60.00025 * 14 12 11 17 17 H 1.48501 * 109.47359 * 179.97438 * 14 12 11 18 18 C 1.38611 * 120.37075 * 245.64533 * 3 2 1 19 19 Si 1.86805 * 119.99665 * 180.02562 * 2 1 3 20 20 C 1.86299 * 109.46916 * 359.97438 * 19 2 1 21 21 C 1.86300 * 109.46847 * 119.99758 * 19 2 1 22 22 C 1.86296 * 109.46865 * 239.99630 * 19 2 1 23 23 H 1.08002 * 119.99790 * 5.18973 * 1 2 3 24 24 H 1.07995 * 120.00293 * 184.91614 * 1 2 3 25 25 H 1.07994 * 120.16035 * 359.96268 * 5 4 3 26 26 H 1.08002 * 119.52690 * 180.02562 * 6 5 4 27 27 H 1.08001 * 119.52371 * 180.02562 * 7 6 5 28 28 H 1.08005 * 120.17133 * 180.02562 * 8 7 6 29 29 H 1.08000 * 119.94080 * 359.91974 * 10 9 8 30 30 H 1.08997 * 109.46973 * 124.99963 * 12 11 10 31 31 H 0.96700 * 113.99382 * 180.02562 * 13 12 11 32 32 H 1.07997 * 119.66866 * 359.97438 * 18 3 2 33 33 H 1.09001 * 109.47136 * 60.00207 * 20 19 2 34 34 H 1.09007 * 109.46539 * 179.97438 * 20 19 2 35 35 H 1.09001 * 109.47448 * 299.99916 * 20 19 2 36 36 H 1.08996 * 109.47090 * 60.00356 * 21 19 2 37 37 H 1.09004 * 109.46581 * 179.97438 * 21 19 2 38 38 H 1.09001 * 109.47422 * 299.99926 * 21 19 2 39 39 H 1.09001 * 109.47051 * 60.00358 * 22 19 2 40 40 H 1.09004 * 109.47149 * 179.97438 * 22 19 2 41 41 H 1.08996 * 109.47662 * 300.00005 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3278 0.0000 0.0000 3 6 2.0653 1.2774 0.0000 4 6 1.9916 2.1471 1.1161 5 6 1.2232 1.8215 2.2424 6 6 1.1757 2.6813 3.2981 7 6 1.8803 3.8828 3.2756 8 6 2.6364 4.2310 2.1985 9 6 2.7095 3.3674 1.0916 10 6 3.4817 3.6943 -0.0363 11 6 3.5387 2.8403 -1.0965 12 6 4.3721 3.2063 -2.2976 13 8 3.5203 3.3907 -3.4301 14 14 5.2980 4.7858 -1.9532 15 1 4.3297 5.8759 -1.6719 16 1 6.1832 4.5941 -0.7764 17 1 6.1196 5.1461 -3.1366 18 6 2.8428 1.6377 -1.0895 19 14 2.2618 -1.6178 -0.0007 20 6 1.0510 -3.0337 -0.0006 21 6 3.3327 -1.7159 -1.5220 22 6 3.3329 -1.7171 1.5203 23 1 -0.5400 0.9315 -0.0846 24 1 -0.5400 -0.9318 0.0801 25 1 0.6715 0.8936 2.2731 26 1 0.5832 2.4278 4.1648 27 1 1.8266 4.5473 4.1253 28 1 3.1779 5.1655 2.1947 29 1 4.0310 4.6239 -0.0626 30 1 5.0829 2.4062 -2.5041 31 1 3.9903 3.6283 -4.2411 32 1 2.9076 0.9775 -1.9417 33 1 0.4240 -2.9758 -0.8903 34 1 1.5960 -3.9778 -0.0015 35 1 0.4247 -2.9762 0.8897 36 1 4.0411 -0.8875 -1.5216 37 1 3.8780 -2.6597 -1.5221 38 1 2.7061 -1.6577 -2.4119 39 1 2.7062 -1.6598 2.4103 40 1 3.8775 -2.6614 1.5202 41 1 4.0412 -0.8887 1.5207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_15738306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:23:05 Heat of formation + Delta-G solvation = -19.222399 kcal Electronic energy + Delta-G solvation = -20496.133049 eV Core-core repulsion = 17657.169030 eV Total energy + Delta-G solvation = -2838.964019 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.38828 -38.48365 -36.96034 -35.49161 -32.02078 -31.61518 -30.20693 -29.52421 -28.39319 -28.29905 -26.70477 -24.37583 -23.35262 -22.78351 -20.05409 -18.53925 -18.27119 -17.82836 -17.05677 -16.35532 -15.82934 -15.50966 -15.14614 -14.90619 -14.56999 -14.27709 -14.16478 -14.07434 -14.04379 -13.95441 -13.79601 -13.42972 -13.35980 -13.19110 -13.07748 -13.04905 -12.58839 -12.23039 -12.14082 -12.04156 -11.69800 -11.65771 -11.21669 -11.04482 -10.89652 -10.52329 -10.35107 -10.07260 -9.42266 -8.55118 -0.42323 0.13862 0.86495 1.12651 1.23622 1.42054 1.47971 1.71952 1.86829 1.89278 2.05297 2.15696 2.58238 3.16233 3.44408 3.69908 3.84569 3.96420 4.06194 4.17412 4.22961 4.32494 4.47679 4.54984 4.57097 4.66918 4.69144 4.75213 4.76184 4.77336 4.79479 4.80601 4.88635 5.06185 5.14795 5.26440 5.33099 5.39780 5.44708 5.52926 5.57338 5.61152 5.67710 5.69001 5.78815 5.98764 6.13706 6.57528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.371 4.371 3 C -0.018 4.018 4 C -0.042 4.042 5 C -0.101 4.101 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.110 4.110 9 C -0.042 4.042 10 C -0.120 4.120 11 C -0.060 4.060 12 C -0.083 4.083 13 O -0.543 6.543 14 Si 0.941 3.059 15 H -0.247 1.247 16 H -0.248 1.248 17 H -0.256 1.256 18 C -0.097 4.097 19 Si 1.050 2.950 20 C -0.449 4.449 21 C -0.449 4.449 22 C -0.447 4.447 23 H 0.094 0.906 24 H 0.108 0.892 25 H 0.129 0.871 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.380 0.620 32 H 0.131 0.869 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -1.493 -0.050 1.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.412 4.412 3 C -0.018 4.018 4 C -0.042 4.042 5 C -0.119 4.119 6 C -0.138 4.138 7 C -0.131 4.131 8 C -0.128 4.128 9 C -0.042 4.042 10 C -0.138 4.138 11 C -0.060 4.060 12 C -0.194 4.194 13 O -0.348 6.348 14 Si 0.764 3.236 15 H -0.171 1.171 16 H -0.172 1.172 17 H -0.180 1.180 18 C -0.115 4.115 19 Si 1.241 2.759 20 C -0.557 4.557 21 C -0.556 4.556 22 C -0.554 4.554 23 H 0.113 0.887 24 H 0.126 0.874 25 H 0.147 0.853 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.096 0.904 31 H 0.227 0.773 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.868 -0.800 0.566 1.309 hybrid contribution 0.100 0.012 -0.487 0.497 sum 0.968 -0.789 0.079 1.251 Atomic orbital electron populations 1.24386 0.95379 1.02077 0.94381 1.27891 1.00923 1.07810 1.04552 1.18978 0.96601 0.93318 0.92919 1.18034 0.97855 0.93566 0.94710 1.21072 0.98218 0.99890 0.92695 1.20927 0.99643 0.94487 0.98728 1.20880 0.96926 0.96928 0.98372 1.21049 0.99583 0.99161 0.93022 1.17876 0.97450 0.94357 0.94539 1.20819 1.00138 0.99000 0.93824 1.18838 0.98424 0.95009 0.93699 1.24799 0.97176 1.09671 0.87725 1.86520 1.35936 1.92950 1.19443 0.85815 0.78915 0.77602 0.81297 1.17052 1.17168 1.17995 1.21014 0.96462 0.96263 0.97754 0.78365 0.66342 0.63183 0.67967 1.26149 1.11341 1.13672 1.04579 1.26138 1.09776 1.04662 1.15040 1.26079 1.09809 1.04437 1.15113 0.88738 0.87394 0.85266 0.85892 0.85852 0.85555 0.86041 0.90436 0.77297 0.85075 0.91012 0.90816 0.91059 0.90943 0.90971 0.91027 0.91201 0.91142 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.04 12.32 28.86 0.36 0.39 16 2 C -0.37 -0.07 3.38 -37.68 -0.13 -0.20 16 3 C -0.02 -0.04 4.92 -104.67 -0.52 -0.56 16 4 C -0.04 -0.13 5.75 -106.57 -0.61 -0.75 16 5 C -0.10 -0.20 9.14 -39.57 -0.36 -0.56 16 6 C -0.12 -0.16 9.95 -39.90 -0.40 -0.56 16 7 C -0.11 -0.15 9.95 -39.94 -0.40 -0.55 16 8 C -0.11 -0.23 9.77 -39.46 -0.39 -0.61 16 9 C -0.04 -0.14 5.74 -106.86 -0.61 -0.76 16 10 C -0.12 -0.35 8.36 -39.43 -0.33 -0.68 16 11 C -0.06 -0.15 5.36 -105.07 -0.56 -0.72 16 12 C -0.08 -0.03 2.77 36.01 0.10 0.07 16 13 O -0.54 -0.43 12.80 -35.23 -0.45 -0.88 16 14 Si 0.94 0.10 25.09 -169.99 -4.27 -4.16 16 15 H -0.25 -0.38 7.03 56.52 0.40 0.02 16 16 H -0.25 -0.16 7.11 56.52 0.40 0.25 16 17 H -0.26 0.01 7.11 56.52 0.40 0.41 16 18 C -0.10 -0.23 8.79 -39.18 -0.34 -0.58 16 19 Si 1.05 -1.87 12.34 -169.99 -2.10 -3.97 16 20 C -0.45 0.78 7.88 101.05 0.80 1.57 16 21 C -0.45 0.51 8.19 101.05 0.83 1.33 16 22 C -0.45 0.25 8.65 101.05 0.87 1.13 16 23 H 0.09 0.05 8.05 -52.49 -0.42 -0.37 16 24 H 0.11 -0.23 7.07 -52.49 -0.37 -0.60 16 25 H 0.13 0.06 6.44 -52.49 -0.34 -0.28 16 26 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 27 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 28 H 0.13 0.02 8.06 -52.48 -0.42 -0.41 16 29 H 0.12 0.18 4.72 -52.49 -0.25 -0.07 16 30 H 0.08 -0.12 7.96 -51.93 -0.41 -0.54 16 31 H 0.38 -1.41 8.74 45.56 0.40 -1.01 16 32 H 0.13 0.16 7.06 -52.49 -0.37 -0.21 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 36 H 0.07 -0.06 7.25 -51.93 -0.38 -0.44 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 39 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 40 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 41 H 0.07 0.02 7.96 -51.93 -0.41 -0.39 16 LS Contribution 337.58 15.07 5.09 5.09 Total: 0.00 -5.25 337.58 -8.94 -14.19 By element: Atomic # 1 Polarization: -2.73 SS G_CDS: -5.52 Total: -8.25 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.69 Total: -2.02 kcal Atomic # 8 Polarization: -0.43 SS G_CDS: -0.45 Total: -0.88 kcal Atomic # 14 Polarization: -1.77 SS G_CDS: -6.36 Total: -8.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -5.25 -8.94 -14.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15738306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.031 kcal (2) G-P(sol) polarization free energy of solvation -5.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds