Wall clock time and date at job start Mon Mar 8 2021 11:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32783 * 1 3 3 C 1.47498 * 120.00043 * 2 1 4 4 C 1.41683 * 120.37016 * 65.92430 * 3 2 1 5 5 C 1.40182 * 121.25685 * 0.02562 * 4 3 2 6 6 C 1.36237 * 119.68094 * 179.97438 * 5 4 3 7 7 C 1.39307 * 120.94140 * 0.02562 * 6 5 4 8 8 C 1.36122 * 120.95352 * 359.97438 * 7 6 5 9 9 C 1.40585 * 119.65720 * 359.97438 * 8 7 6 10 10 C 1.40546 * 121.17282 * 180.08263 * 9 8 7 11 11 C 1.36254 * 120.10795 * 179.90594 * 10 9 8 12 12 C 1.50700 * 119.41042 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.47214 * 244.99729 * 12 11 10 14 14 Si 1.86298 * 109.47407 * 5.00108 * 12 11 10 15 15 H 1.48495 * 109.47334 * 299.99899 * 14 12 11 16 16 H 1.48505 * 109.47025 * 60.00025 * 14 12 11 17 17 H 1.48501 * 109.47359 * 179.97438 * 14 12 11 18 18 C 1.38611 * 120.37075 * 245.64533 * 3 2 1 19 19 Si 1.86805 * 119.99665 * 180.02562 * 2 1 3 20 20 C 1.86299 * 109.46916 * 359.97438 * 19 2 1 21 21 C 1.86300 * 109.46847 * 119.99758 * 19 2 1 22 22 C 1.86296 * 109.46865 * 239.99630 * 19 2 1 23 23 H 1.08002 * 119.99790 * 5.18973 * 1 2 3 24 24 H 1.07995 * 120.00293 * 184.91614 * 1 2 3 25 25 H 1.07994 * 120.16035 * 359.96268 * 5 4 3 26 26 H 1.08002 * 119.52690 * 180.02562 * 6 5 4 27 27 H 1.08001 * 119.52371 * 180.02562 * 7 6 5 28 28 H 1.08005 * 120.17133 * 180.02562 * 8 7 6 29 29 H 1.08000 * 119.94080 * 359.91974 * 10 9 8 30 30 H 1.08997 * 109.46973 * 124.99963 * 12 11 10 31 31 H 0.96700 * 113.99382 * 180.02562 * 13 12 11 32 32 H 1.07997 * 119.66866 * 359.97438 * 18 3 2 33 33 H 1.09001 * 109.47136 * 60.00207 * 20 19 2 34 34 H 1.09007 * 109.46539 * 179.97438 * 20 19 2 35 35 H 1.09001 * 109.47448 * 299.99916 * 20 19 2 36 36 H 1.08996 * 109.47090 * 60.00356 * 21 19 2 37 37 H 1.09004 * 109.46581 * 179.97438 * 21 19 2 38 38 H 1.09001 * 109.47422 * 299.99926 * 21 19 2 39 39 H 1.09001 * 109.47051 * 60.00358 * 22 19 2 40 40 H 1.09004 * 109.47149 * 179.97438 * 22 19 2 41 41 H 1.08996 * 109.47662 * 300.00005 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3278 0.0000 0.0000 3 6 2.0653 1.2774 0.0000 4 6 1.9916 2.1471 1.1161 5 6 1.2232 1.8215 2.2424 6 6 1.1757 2.6813 3.2981 7 6 1.8803 3.8828 3.2756 8 6 2.6364 4.2310 2.1985 9 6 2.7095 3.3674 1.0916 10 6 3.4817 3.6943 -0.0363 11 6 3.5387 2.8403 -1.0965 12 6 4.3721 3.2063 -2.2976 13 8 3.5203 3.3907 -3.4301 14 14 5.2980 4.7858 -1.9532 15 1 4.3297 5.8759 -1.6719 16 1 6.1832 4.5941 -0.7764 17 1 6.1196 5.1461 -3.1366 18 6 2.8428 1.6377 -1.0895 19 14 2.2618 -1.6178 -0.0007 20 6 1.0510 -3.0337 -0.0006 21 6 3.3327 -1.7159 -1.5220 22 6 3.3329 -1.7171 1.5203 23 1 -0.5400 0.9315 -0.0846 24 1 -0.5400 -0.9318 0.0801 25 1 0.6715 0.8936 2.2731 26 1 0.5832 2.4278 4.1648 27 1 1.8266 4.5473 4.1253 28 1 3.1779 5.1655 2.1947 29 1 4.0310 4.6239 -0.0626 30 1 5.0829 2.4062 -2.5041 31 1 3.9903 3.6283 -4.2411 32 1 2.9076 0.9775 -1.9417 33 1 0.4240 -2.9758 -0.8903 34 1 1.5960 -3.9778 -0.0015 35 1 0.4247 -2.9762 0.8897 36 1 4.0411 -0.8875 -1.5216 37 1 3.8780 -2.6597 -1.5221 38 1 2.7061 -1.6577 -2.4119 39 1 2.7062 -1.6598 2.4103 40 1 3.8775 -2.6614 1.5202 41 1 4.0412 -0.8887 1.5207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_15738306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:23:04 Heat of formation + Delta-G solvation = -9.248504 kcal Electronic energy + Delta-G solvation = -20495.700548 eV Core-core repulsion = 17657.169030 eV Total energy + Delta-G solvation = -2838.531519 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48635 -38.53395 -37.00944 -35.54540 -32.08441 -31.69281 -30.27633 -29.41329 -28.30834 -28.16826 -26.76826 -24.46925 -23.42927 -22.87713 -20.08449 -18.56418 -18.35121 -17.89980 -17.14378 -16.38414 -15.84824 -15.57637 -15.19970 -14.96040 -14.63116 -14.25954 -14.21828 -14.11031 -14.00811 -13.84407 -13.73717 -13.46250 -13.27245 -13.11782 -12.97255 -12.95764 -12.64206 -12.29418 -12.22208 -12.10124 -11.76677 -11.70931 -11.20317 -11.04694 -10.77092 -10.55891 -10.35051 -10.06937 -9.55328 -8.66151 -0.53935 0.00196 0.82912 1.10743 1.18291 1.40149 1.44282 1.77098 1.85527 2.01726 2.03827 2.22504 2.67311 3.07107 3.40971 3.62503 3.83667 3.89090 3.98266 4.11364 4.16181 4.32694 4.38538 4.48456 4.52604 4.72967 4.80300 4.82024 4.82666 4.87424 4.88077 4.89525 4.94112 4.95393 5.06432 5.19343 5.25270 5.32406 5.50392 5.56169 5.57285 5.60988 5.65343 5.68593 5.73722 5.91451 6.04845 6.79439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.386 4.386 3 C -0.021 4.021 4 C -0.063 4.063 5 C -0.110 4.110 6 C -0.127 4.127 7 C -0.116 4.116 8 C -0.126 4.126 9 C -0.063 4.063 10 C -0.139 4.139 11 C -0.071 4.071 12 C -0.083 4.083 13 O -0.561 6.561 14 Si 0.970 3.030 15 H -0.272 1.272 16 H -0.258 1.258 17 H -0.249 1.249 18 C -0.113 4.113 19 Si 1.105 2.895 20 C -0.454 4.454 21 C -0.461 4.461 22 C -0.461 4.461 23 H 0.081 0.919 24 H 0.130 0.870 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.398 0.602 32 H 0.140 0.860 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -2.383 -0.105 2.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.425 4.425 3 C -0.021 4.021 4 C -0.063 4.063 5 C -0.128 4.128 6 C -0.144 4.144 7 C -0.134 4.134 8 C -0.144 4.144 9 C -0.063 4.063 10 C -0.157 4.157 11 C -0.071 4.071 12 C -0.193 4.193 13 O -0.370 6.370 14 Si 0.795 3.205 15 H -0.198 1.198 16 H -0.182 1.182 17 H -0.173 1.173 18 C -0.130 4.130 19 Si 1.293 2.707 20 C -0.563 4.563 21 C -0.568 4.568 22 C -0.567 4.567 23 H 0.099 0.901 24 H 0.148 0.852 25 H 0.159 0.841 26 H 0.162 0.838 27 H 0.162 0.838 28 H 0.157 0.843 29 H 0.145 0.855 30 H 0.117 0.883 31 H 0.249 0.751 32 H 0.158 0.842 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.640 -1.674 0.495 1.860 hybrid contribution 0.158 0.323 -0.446 0.572 sum 0.798 -1.352 0.050 1.570 Atomic orbital electron populations 1.24517 0.95236 1.02515 0.93807 1.28304 1.01309 1.07872 1.04983 1.19266 0.96397 0.93915 0.92570 1.18312 0.98501 0.93928 0.95595 1.21281 0.98267 1.00600 0.92637 1.21243 0.99639 0.94333 0.99219 1.21189 0.96242 0.97253 0.98695 1.21300 1.00276 0.99709 0.93124 1.18177 0.97896 0.94975 0.95217 1.20990 1.00879 0.99592 0.94243 1.19162 0.98501 0.95019 0.94395 1.24828 0.96922 1.10505 0.87087 1.86469 1.36981 1.93113 1.20409 0.85405 0.77796 0.76436 0.80878 1.19753 1.18236 1.17254 1.21205 0.97003 0.96600 0.98227 0.77551 0.65133 0.61730 0.66326 1.26180 1.11457 1.13564 1.05054 1.26273 1.10064 1.04733 1.15696 1.26273 1.10059 1.04145 1.16264 0.90065 0.85196 0.84128 0.83822 0.83792 0.84332 0.85508 0.88319 0.75143 0.84245 0.90580 0.90478 0.90566 0.91422 0.90496 0.90865 0.91271 0.90675 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.08 12.32 66.64 0.82 0.90 16 2 C -0.39 -0.27 3.38 23.54 0.08 -0.19 16 3 C -0.02 -0.12 4.92 -19.90 -0.10 -0.22 16 4 C -0.06 -0.49 5.75 -21.12 -0.12 -0.62 16 5 C -0.11 -0.52 9.14 22.28 0.20 -0.32 16 6 C -0.13 -0.36 9.95 22.06 0.22 -0.14 16 7 C -0.12 -0.35 9.95 22.03 0.22 -0.13 16 8 C -0.13 -0.68 9.77 22.35 0.22 -0.47 16 9 C -0.06 -0.54 5.74 -21.31 -0.12 -0.66 16 10 C -0.14 -1.07 8.36 22.37 0.19 -0.89 16 11 C -0.07 -0.46 5.36 -20.16 -0.11 -0.57 16 12 C -0.08 -0.11 2.77 71.24 0.20 0.09 16 13 O -0.56 -1.03 12.80 -148.98 -1.91 -2.94 16 14 Si 0.97 0.88 25.09 68.60 1.72 2.60 16 15 H -0.27 -1.32 7.03 99.48 0.70 -0.62 16 16 H -0.26 -0.59 7.11 99.48 0.71 0.12 16 17 H -0.25 0.12 7.11 99.48 0.71 0.82 16 18 C -0.11 -0.68 8.79 22.53 0.20 -0.48 16 19 Si 1.10 -4.24 12.34 68.60 0.85 -3.40 16 20 C -0.45 2.15 7.88 113.37 0.89 3.04 16 21 C -0.46 1.11 8.19 113.37 0.93 2.04 16 22 C -0.46 0.37 8.65 113.37 0.98 1.35 16 23 H 0.08 0.16 8.05 -2.91 -0.02 0.13 16 24 H 0.13 -0.70 7.07 -2.91 -0.02 -0.72 16 25 H 0.14 0.18 6.44 -2.91 -0.02 0.16 16 26 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 27 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 28 H 0.14 0.22 8.06 -2.91 -0.02 0.19 16 29 H 0.13 0.64 4.72 -2.91 -0.01 0.63 16 30 H 0.10 -0.33 7.96 -2.39 -0.02 -0.35 16 31 H 0.40 -3.05 8.74 -74.06 -0.65 -3.70 16 32 H 0.14 0.46 7.06 -2.91 -0.02 0.44 16 33 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 34 H 0.08 -0.38 7.96 -2.38 -0.02 -0.40 16 35 H 0.08 -0.41 7.96 -2.39 -0.02 -0.43 16 36 H 0.07 -0.09 7.25 -2.39 -0.02 -0.11 16 37 H 0.08 -0.26 7.96 -2.38 -0.02 -0.28 16 38 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 39 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 40 H 0.07 -0.15 7.96 -2.38 -0.02 -0.17 16 41 H 0.06 0.10 7.96 -2.39 -0.02 0.08 16 Total: 0.00 -12.96 337.58 6.47 -6.49 By element: Atomic # 1 Polarization: -6.61 SS G_CDS: 1.11 Total: -5.50 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.70 Total: 2.74 kcal Atomic # 8 Polarization: -1.03 SS G_CDS: -1.91 Total: -2.94 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: 2.57 Total: -0.80 kcal Total: -12.96 6.47 -6.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15738306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.756 kcal (2) G-P(sol) polarization free energy of solvation -12.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds