Wall clock time and date at job start Mon Mar 8 2021 11:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32511 * 1 3 3 C 1.47907 * 119.99921 * 2 1 4 4 C 1.36651 * 126.26075 * 354.23081 * 3 2 1 5 5 N 1.34791 * 107.58538 * 180.02562 * 4 3 2 6 6 C 1.46505 * 125.86599 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46989 * 125.00218 * 6 5 4 8 8 C 1.38234 * 119.99819 * 269.72200 * 7 6 5 9 9 C 1.38234 * 120.00066 * 179.76969 * 8 7 6 10 10 C 1.38239 * 119.99807 * 0.50743 * 9 8 7 11 11 C 1.50696 * 119.99908 * 179.72823 * 10 9 8 12 12 O 1.42908 * 109.46873 * 245.01984 * 11 10 9 13 13 Si 1.86298 * 109.47315 * 5.02050 * 11 10 9 14 14 H 1.48498 * 109.47111 * 60.00186 * 13 11 10 15 15 H 1.48500 * 109.47004 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47196 * 299.99974 * 13 11 10 17 17 C 1.38230 * 119.99960 * 359.74677 * 10 9 8 18 18 C 1.38234 * 120.00283 * 359.97438 * 17 10 9 19 19 N 1.40000 * 108.26662 * 0.23033 * 5 4 3 20 20 C 1.30645 * 108.58297 * 359.60919 * 19 5 4 21 21 Si 1.86801 * 120.00011 * 180.02562 * 2 1 3 22 22 C 1.86297 * 109.46925 * 244.57689 * 21 2 1 23 23 C 1.86304 * 109.46994 * 4.57303 * 21 2 1 24 24 C 1.86298 * 109.47084 * 124.57501 * 21 2 1 25 25 H 1.07999 * 119.99966 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99917 * 359.97438 * 1 2 3 27 27 H 1.08000 * 126.19816 * 0.06157 * 4 3 2 28 28 H 1.09000 * 109.46770 * 244.99968 * 6 5 4 29 29 H 1.09000 * 109.47033 * 4.99695 * 6 5 4 30 30 H 1.07995 * 119.99875 * 0.02562 * 8 7 6 31 31 H 1.07995 * 120.00667 * 180.23249 * 9 8 7 32 32 H 1.09002 * 109.47192 * 125.02231 * 11 10 9 33 33 H 0.96700 * 113.99732 * 60.00405 * 12 11 10 34 34 H 1.08005 * 120.00267 * 179.97438 * 17 10 9 35 35 H 1.08001 * 120.00804 * 179.97438 * 18 17 10 36 36 H 1.07998 * 125.96149 * 180.10285 * 20 19 5 37 37 H 1.09001 * 109.47723 * 60.00165 * 22 21 2 38 38 H 1.09004 * 109.47047 * 179.97438 * 22 21 2 39 39 H 1.09003 * 109.47216 * 299.99703 * 22 21 2 40 40 H 1.08999 * 109.46844 * 60.00493 * 23 21 2 41 41 H 1.09004 * 109.46962 * 180.02562 * 23 21 2 42 42 H 1.08996 * 109.47345 * 300.00355 * 23 21 2 43 43 H 1.08999 * 109.47446 * 65.16561 * 24 21 2 44 44 H 1.09008 * 109.46603 * 185.16017 * 24 21 2 45 45 H 1.08992 * 109.47181 * 305.15372 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3251 0.0000 0.0000 3 6 2.0646 1.2809 0.0000 4 6 1.5193 2.5290 -0.1108 5 7 2.5297 3.4202 -0.0679 6 6 2.3941 4.8764 -0.1541 7 6 3.0548 5.5139 1.0409 8 6 2.3240 5.7512 2.1900 9 6 2.9312 6.3316 3.2878 10 6 4.2667 6.6845 3.2328 11 6 4.9271 7.3229 4.4275 12 8 5.3174 8.6579 4.0992 13 14 3.7291 7.3592 5.8538 14 1 3.3235 5.9721 6.1949 15 1 4.3797 7.9889 7.0308 16 1 2.5290 8.1462 5.4723 17 6 4.9962 6.4521 2.0819 18 6 4.3904 5.8664 0.9861 19 7 3.7315 2.7148 0.0671 20 6 3.4615 1.4374 0.1137 21 14 2.2591 -1.6177 -0.0007 22 6 3.2226 -1.7792 1.5856 23 6 1.0533 -3.0309 -0.1414 24 6 3.4328 -1.6565 -1.4470 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 0.4692 2.7594 -0.2133 28 1 2.8723 5.2324 -1.0667 29 1 1.3372 5.1425 -0.1701 30 1 1.2797 5.4792 2.2315 31 1 2.3613 6.5136 4.1869 32 1 5.8080 6.7453 4.7076 33 1 4.5823 9.2301 3.8399 34 1 6.0394 6.7282 2.0388 35 1 4.9602 5.6851 0.0867 36 1 4.1827 0.6401 0.2163 37 1 2.5359 -1.7565 2.4318 38 1 3.7673 -2.7234 1.5854 39 1 3.9281 -0.9524 1.6679 40 1 0.4896 -2.9365 -1.0695 41 1 1.5983 -3.9749 -0.1414 42 1 0.3665 -3.0082 0.7047 43 1 4.1940 -0.8871 -1.3179 44 1 3.9106 -2.6348 -1.5009 45 1 2.8806 -1.4706 -2.3681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_15738430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:24:46 Heat of formation + Delta-G solvation = 52.328803 kcal Electronic energy + Delta-G solvation = -23357.841535 eV Core-core repulsion = 20080.053149 eV Total energy + Delta-G solvation = -3277.788386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11728 -40.62659 -37.81768 -35.51156 -34.19542 -32.30945 -32.00169 -29.93409 -29.34898 -28.67267 -28.24592 -27.73445 -25.48687 -23.97706 -23.05332 -22.42175 -21.41897 -19.72472 -18.60855 -17.98679 -17.14817 -17.01000 -16.36539 -16.10530 -15.62741 -15.50167 -15.25196 -15.11298 -14.72871 -14.42892 -14.27374 -14.08664 -13.84009 -13.77684 -13.48026 -13.46611 -13.33103 -13.22343 -13.14222 -13.00378 -12.94711 -12.82420 -12.34498 -12.23901 -12.10172 -11.63144 -11.54263 -11.43711 -10.73887 -10.62761 -10.51803 -10.47778 -10.39689 -9.98167 -9.84551 -8.74419 0.02592 0.34014 0.69407 1.11962 1.20132 1.39342 1.47358 1.64693 1.85897 1.93578 2.02366 2.08311 2.66519 2.68319 2.73653 3.39236 3.51808 3.60318 3.79935 3.87929 3.95457 3.96464 4.17763 4.29479 4.39811 4.43767 4.53076 4.58196 4.69274 4.84618 4.86170 4.86920 4.89284 4.89735 4.91591 4.92231 4.96278 4.98194 5.09881 5.24595 5.43827 5.44199 5.49088 5.60218 5.69061 5.70115 5.77286 5.88558 6.07297 6.12381 6.65259 6.75960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.333 4.333 3 C -0.202 4.202 4 C 0.053 3.947 5 N -0.368 5.368 6 C 0.169 3.831 7 C -0.110 4.110 8 C -0.099 4.099 9 C -0.139 4.139 10 C -0.114 4.114 11 C -0.082 4.082 12 O -0.551 6.551 13 Si 0.985 3.015 14 H -0.263 1.263 15 H -0.274 1.274 16 H -0.246 1.246 17 C -0.105 4.105 18 C -0.092 4.092 19 N -0.321 5.321 20 C 0.039 3.961 21 Si 1.103 2.897 22 C -0.461 4.461 23 C -0.458 4.458 24 C -0.460 4.460 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.198 0.802 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.389 0.611 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.193 0.807 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 -0.249 -0.900 4.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.375 4.375 3 C -0.213 4.213 4 C -0.093 4.093 5 N -0.149 5.149 6 C 0.050 3.950 7 C -0.111 4.111 8 C -0.118 4.118 9 C -0.157 4.157 10 C -0.115 4.115 11 C -0.192 4.192 12 O -0.358 6.358 13 Si 0.809 3.191 14 H -0.187 1.187 15 H -0.200 1.200 16 H -0.170 1.170 17 C -0.123 4.123 18 C -0.110 4.110 19 N -0.142 5.142 20 C -0.147 4.147 21 Si 1.291 2.709 22 C -0.567 4.567 23 C -0.566 4.566 24 C -0.566 4.566 25 H 0.132 0.868 26 H 0.109 0.891 27 H 0.215 0.785 28 H 0.119 0.881 29 H 0.153 0.847 30 H 0.161 0.839 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.238 0.762 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.210 0.790 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.436 0.677 -0.068 3.503 hybrid contribution -0.659 -0.231 -0.504 0.861 sum -4.095 0.446 -0.571 4.158 Atomic orbital electron populations 1.24273 0.95572 1.02251 0.98404 1.27606 1.00770 1.07089 1.02026 1.19312 0.92729 0.93757 1.15524 1.23178 0.95708 0.89302 1.01101 1.48683 1.03864 1.06604 1.55733 1.20860 1.03944 0.73364 0.96874 1.19950 0.94713 1.00392 0.96005 1.21216 1.00809 0.97639 0.92098 1.21212 0.94555 1.00570 0.99368 1.20483 0.94260 0.99941 0.96796 1.25055 1.07642 0.85218 1.01323 1.86496 1.38741 1.20297 1.90305 0.85182 0.77288 0.80503 0.76129 1.18722 1.19980 1.16991 1.21138 1.00521 0.98104 0.92570 1.21227 0.94302 0.96530 0.98954 1.77171 1.06424 1.06055 1.24514 1.24380 0.96412 0.94222 0.99701 0.77512 0.65067 0.62404 0.65916 1.26300 1.08941 1.04535 1.16949 1.26233 1.11598 1.13905 1.04841 1.26292 1.11110 1.04410 1.14805 0.86773 0.89098 0.78515 0.88132 0.84658 0.83925 0.85092 0.86250 0.76165 0.85197 0.85448 0.79008 0.91482 0.90764 0.91609 0.90888 0.90741 0.90851 0.91559 0.90815 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.29 13.51 66.68 0.90 1.19 16 2 C -0.33 0.04 4.70 23.69 0.11 0.15 16 3 C -0.20 -0.64 5.92 -20.41 -0.12 -0.76 16 4 C 0.05 0.06 10.78 83.87 0.90 0.97 16 5 N -0.37 -1.09 3.66 -350.79 -1.28 -2.37 16 6 C 0.17 -0.42 6.63 85.63 0.57 0.15 16 7 C -0.11 -0.08 5.31 -19.87 -0.11 -0.19 16 8 C -0.10 0.00 9.70 22.27 0.22 0.21 16 9 C -0.14 -0.14 8.67 22.27 0.19 0.05 16 10 C -0.11 -0.23 5.35 -19.87 -0.11 -0.33 16 11 C -0.08 -0.02 2.80 71.23 0.20 0.18 16 12 O -0.55 -0.65 12.83 -148.98 -1.91 -2.57 16 13 Si 0.98 -0.50 25.14 68.60 1.72 1.23 16 14 H -0.26 -0.36 7.11 99.48 0.71 0.35 16 15 H -0.27 -0.80 7.11 99.48 0.71 -0.10 16 16 H -0.25 0.38 7.04 99.48 0.70 1.08 16 17 C -0.11 -0.33 9.69 22.27 0.22 -0.11 16 18 C -0.09 -0.25 9.70 22.27 0.22 -0.03 16 19 N -0.32 -2.57 12.36 -56.35 -0.70 -3.27 16 20 C 0.04 0.21 10.91 85.55 0.93 1.14 16 21 Si 1.10 -4.04 11.20 68.60 0.77 -3.27 16 22 C -0.46 0.68 8.65 113.37 0.98 1.66 16 23 C -0.46 1.60 7.89 113.37 0.89 2.49 16 24 C -0.46 0.67 8.65 113.37 0.98 1.65 16 25 H 0.11 -0.50 7.04 -2.91 -0.02 -0.52 16 26 H 0.09 -0.28 6.87 -2.91 -0.02 -0.30 16 27 H 0.20 -1.07 7.26 -2.91 -0.02 -1.09 16 28 H 0.10 -0.37 8.09 -2.39 -0.02 -0.39 16 29 H 0.14 -1.22 8.01 -2.39 -0.02 -1.24 16 30 H 0.14 -0.63 8.06 -2.91 -0.02 -0.65 16 31 H 0.13 -0.21 4.87 -2.91 -0.01 -0.23 16 32 H 0.12 -0.06 7.96 -2.39 -0.02 -0.08 16 33 H 0.39 -2.15 8.70 -74.06 -0.64 -2.80 16 34 H 0.13 0.28 8.06 -2.91 -0.02 0.26 16 35 H 0.13 0.24 8.06 -2.91 -0.02 0.22 16 36 H 0.19 0.22 5.63 -2.91 -0.02 0.20 16 37 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 38 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 39 H 0.06 -0.04 7.13 -2.39 -0.02 -0.06 16 40 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 41 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 42 H 0.07 -0.28 7.94 -2.39 -0.02 -0.30 16 43 H 0.07 -0.05 7.00 -2.39 -0.02 -0.06 16 44 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 45 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 Total: 0.00 -15.29 373.74 6.67 -8.63 By element: Atomic # 1 Polarization: -7.88 SS G_CDS: 1.08 Total: -6.80 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.98 Total: 8.42 kcal Atomic # 7 Polarization: -3.66 SS G_CDS: -1.98 Total: -5.64 kcal Atomic # 8 Polarization: -0.65 SS G_CDS: -1.91 Total: -2.57 kcal Atomic # 14 Polarization: -4.53 SS G_CDS: 2.49 Total: -2.04 kcal Total: -15.29 6.67 -8.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_15738430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.954 kcal (2) G-P(sol) polarization free energy of solvation -15.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds