Wall clock time and date at job start Mon Mar 8 2021 11:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32583 * 1 3 3 C 1.47790 * 120.00185 * 2 1 4 4 C 1.39443 * 120.12826 * 114.60445 * 3 2 1 5 5 C 1.38469 * 119.82420 * 179.97438 * 4 3 2 6 6 O 1.35949 * 119.95847 * 180.02562 * 5 4 3 7 7 C 1.38790 * 120.08068 * 0.02562 * 5 4 3 8 8 C 1.50702 * 119.86951 * 179.97438 * 7 5 4 9 9 O 1.42908 * 109.46890 * 285.00032 * 8 7 5 10 10 Si 1.86298 * 109.47402 * 165.00253 * 8 7 5 11 11 H 1.48506 * 109.46886 * 299.99701 * 10 8 7 12 12 H 1.48493 * 109.47064 * 59.99414 * 10 8 7 13 13 H 1.48502 * 109.47257 * 180.02562 * 10 8 7 14 14 C 1.38261 * 120.26187 * 359.97438 * 7 5 4 15 15 C 1.38195 * 120.17004 * 359.97438 * 14 7 5 16 16 F 1.35102 * 120.03941 * 179.97438 * 15 14 7 17 17 Si 1.86805 * 120.00042 * 179.97438 * 2 1 3 18 18 C 1.86295 * 109.47091 * 275.09094 * 17 2 1 19 19 C 1.86301 * 109.46932 * 35.09354 * 17 2 1 20 20 C 1.86305 * 109.46866 * 155.09233 * 17 2 1 21 21 H 1.07996 * 119.99579 * 185.05000 * 1 2 3 22 22 H 1.08000 * 120.00174 * 5.05312 * 1 2 3 23 23 H 1.07996 * 120.09010 * 0.25009 * 4 3 2 24 24 H 0.96708 * 114.00581 * 89.99412 * 6 5 4 25 25 H 1.09001 * 109.47140 * 44.99901 * 8 7 5 26 26 H 0.96705 * 114.00029 * 179.97438 * 9 8 7 27 27 H 1.07999 * 119.91556 * 180.02562 * 14 7 5 28 28 H 1.09003 * 109.46894 * 60.00173 * 18 17 2 29 29 H 1.09002 * 109.47188 * 179.97438 * 18 17 2 30 30 H 1.08996 * 109.47723 * 300.00137 * 18 17 2 31 31 H 1.08996 * 109.46798 * 59.99830 * 19 17 2 32 32 H 1.08997 * 109.46828 * 180.02562 * 19 17 2 33 33 H 1.08998 * 109.46897 * 300.00202 * 19 17 2 34 34 H 1.08999 * 109.46858 * 55.11348 * 20 17 2 35 35 H 1.09004 * 109.46825 * 175.11373 * 20 17 2 36 36 H 1.08999 * 109.47055 * 295.11266 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3258 0.0000 0.0000 3 6 2.0648 1.2799 0.0000 4 6 2.8497 1.6349 1.0965 5 6 3.5398 2.8353 1.0896 6 8 4.3062 3.1840 2.1570 7 6 3.4501 3.6830 -0.0056 8 6 4.2028 4.9886 -0.0079 9 8 3.5419 5.9209 0.8504 10 14 4.2577 5.6709 -1.7405 11 1 4.9445 4.7022 -2.6324 12 1 2.8733 5.8968 -2.2277 13 1 5.0000 6.9571 -1.7428 14 6 2.6729 3.3344 -1.0947 15 6 1.9805 2.1385 -1.0995 16 9 1.2215 1.8007 -2.1649 17 14 2.2599 -1.6178 0.0007 18 6 2.4354 -2.2327 1.7505 19 6 1.3257 -2.8746 -1.0085 20 6 3.9500 -1.3593 -0.7392 21 1 -0.5399 -0.9317 0.0823 22 1 -0.5400 0.9317 -0.0824 23 1 2.9226 0.9734 1.9471 24 1 5.2233 2.8829 2.0980 25 1 5.2190 4.8228 0.3498 26 1 3.9727 6.7854 0.8980 27 1 2.6075 3.9981 -1.9442 28 1 1.4465 -2.3839 2.1833 29 1 2.9800 -3.1769 1.7509 30 1 2.9819 -1.4974 2.3410 31 1 1.2231 -2.5147 -2.0322 32 1 1.8705 -3.8186 -1.0077 33 1 0.3369 -3.0257 -0.5757 34 1 4.4639 -0.5623 -0.2017 35 1 4.5262 -2.2812 -0.6599 36 1 3.8488 -1.0832 -1.7887 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_16463738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:37:01 Heat of formation + Delta-G solvation = -115.972730 kcal Electronic energy + Delta-G solvation = -19001.765562 eV Core-core repulsion = 15910.686007 eV Total energy + Delta-G solvation = -3091.079556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.97405 -41.02299 -37.76956 -37.69070 -34.96041 -31.75936 -30.43382 -29.42314 -28.36178 -28.28218 -26.72075 -24.02701 -23.03569 -21.03748 -19.00824 -18.55155 -18.34718 -17.83613 -16.80179 -16.58649 -16.07876 -15.81968 -15.28430 -15.08184 -14.83966 -14.46506 -14.10825 -13.99183 -13.86418 -13.69527 -13.50338 -13.19970 -13.18193 -13.05791 -12.98677 -12.87506 -12.57823 -12.18272 -11.92518 -11.72551 -11.24378 -10.92674 -10.79730 -10.33464 -10.26282 -9.89665 -9.40225 -0.19039 -0.03758 0.97711 1.08112 1.38713 1.42632 1.75188 1.84007 1.96774 2.16660 2.32380 2.66570 3.04252 3.14192 3.45685 3.62821 3.76876 3.89779 4.09906 4.37747 4.60494 4.67716 4.76016 4.81184 4.82504 4.83081 4.84902 4.88388 4.89797 4.92462 5.03116 5.15997 5.30710 5.55958 5.56616 5.65372 5.68550 5.74813 6.77985 6.83607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.398 4.398 3 C -0.041 4.041 4 C -0.123 4.123 5 C 0.134 3.866 6 O -0.494 6.494 7 C -0.100 4.100 8 C -0.070 4.070 9 O -0.559 6.559 10 Si 0.966 3.034 11 H -0.255 1.255 12 H -0.275 1.275 13 H -0.245 1.245 14 C -0.150 4.150 15 C 0.068 3.932 16 F -0.143 7.143 17 Si 1.108 2.892 18 C -0.453 4.453 19 C -0.461 4.461 20 C -0.460 4.460 21 H 0.131 0.869 22 H 0.079 0.921 23 H 0.163 0.837 24 H 0.412 0.588 25 H 0.102 0.898 26 H 0.398 0.602 27 H 0.139 0.861 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -1.985 1.271 4.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.436 4.436 3 C -0.042 4.042 4 C -0.141 4.141 5 C 0.088 3.912 6 O -0.307 6.307 7 C -0.101 4.101 8 C -0.180 4.180 9 O -0.368 6.368 10 Si 0.790 3.210 11 H -0.179 1.179 12 H -0.201 1.201 13 H -0.169 1.169 14 C -0.168 4.168 15 C 0.048 3.952 16 F -0.122 7.122 17 Si 1.295 2.705 18 C -0.560 4.560 19 C -0.568 4.568 20 C -0.567 4.567 21 H 0.149 0.851 22 H 0.098 0.902 23 H 0.181 0.819 24 H 0.272 0.728 25 H 0.120 0.880 26 H 0.248 0.752 27 H 0.156 0.844 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.993 -1.810 0.667 3.561 hybrid contribution 0.245 0.485 -0.330 0.635 sum 3.238 -1.326 0.337 3.515 Atomic orbital electron populations 1.24453 0.95490 1.02575 0.92947 1.28447 1.01378 1.07902 1.05869 1.19111 0.98109 0.94662 0.92320 1.21610 0.97473 0.96603 0.98405 1.18165 0.95117 0.91763 0.86112 1.84855 1.26929 1.79872 1.39055 1.19671 1.00023 0.97025 0.93371 1.24562 0.98108 0.89183 1.06145 1.86511 1.55307 1.26825 1.68191 0.85498 0.79619 0.80746 0.75143 1.17906 1.20090 1.16858 1.21039 0.98694 0.96593 1.00500 1.17859 0.96099 0.95335 0.85865 1.91469 1.73834 1.92481 1.54391 0.77510 0.64602 0.61067 0.67275 1.26159 1.05082 1.06588 1.18214 1.26271 1.09119 1.12196 1.09231 1.26245 1.18576 1.05158 1.06723 0.85096 0.90227 0.81915 0.72798 0.87976 0.75212 0.84358 0.90896 0.90431 0.90768 0.91690 0.90342 0.90625 0.91107 0.90284 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.08 13.38 66.66 0.89 0.81 16 2 C -0.40 -0.30 3.90 23.64 0.09 -0.21 16 3 C -0.04 -0.17 4.91 -20.09 -0.10 -0.27 16 4 C -0.12 -0.22 9.35 22.62 0.21 -0.01 16 5 C 0.13 0.38 6.67 22.46 0.15 0.53 16 6 O -0.49 0.05 12.81 -92.97 -1.19 -1.14 16 7 C -0.10 -0.42 5.31 -19.73 -0.10 -0.53 16 8 C -0.07 0.01 2.36 71.24 0.17 0.18 16 9 O -0.56 -1.17 12.86 -148.98 -1.92 -3.09 16 10 Si 0.97 -0.17 25.48 68.60 1.75 1.58 16 11 H -0.26 -0.26 7.11 99.48 0.71 0.45 16 12 H -0.28 -1.19 6.73 99.48 0.67 -0.52 16 13 H -0.25 0.35 7.11 99.48 0.71 1.06 16 14 C -0.15 -0.95 8.62 22.26 0.19 -0.76 16 15 C 0.07 0.51 7.23 22.63 0.16 0.67 16 16 F -0.14 -1.39 16.64 44.97 0.75 -0.64 16 17 Si 1.11 -5.10 12.09 68.60 0.83 -4.27 16 18 C -0.45 2.23 8.65 113.37 0.98 3.21 16 19 C -0.46 1.50 8.65 113.37 0.98 2.49 16 20 C -0.46 1.16 8.65 113.37 0.98 2.14 16 21 H 0.13 -0.57 7.59 -2.91 -0.02 -0.59 16 22 H 0.08 0.27 8.05 -2.91 -0.02 0.24 16 23 H 0.16 -0.44 8.06 -2.91 -0.02 -0.47 16 24 H 0.41 -4.34 9.07 -74.05 -0.67 -5.01 16 25 H 0.10 -0.59 7.82 -2.39 -0.02 -0.61 16 26 H 0.40 -2.92 8.74 -74.05 -0.65 -3.57 16 27 H 0.14 0.71 4.86 -2.91 -0.01 0.69 16 28 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 29 H 0.08 -0.43 7.96 -2.39 -0.02 -0.45 16 30 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H 0.06 -0.10 7.96 -2.39 -0.02 -0.12 16 32 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 33 H 0.07 -0.32 7.83 -2.39 -0.02 -0.34 16 34 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 35 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 36 H 0.06 -0.03 7.96 -2.39 -0.02 -0.05 16 Total: 0.00 -15.56 314.20 5.32 -10.24 By element: Atomic # 1 Polarization: -11.42 SS G_CDS: 0.49 Total: -10.93 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 4.61 Total: 8.25 kcal Atomic # 8 Polarization: -1.12 SS G_CDS: -3.11 Total: -4.23 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.75 Total: -0.64 kcal Atomic # 14 Polarization: -5.27 SS G_CDS: 2.58 Total: -2.69 kcal Total: -15.56 5.32 -10.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_16463738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.730 kcal (2) G-P(sol) polarization free energy of solvation -15.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds