Wall clock time and date at job start Mon Mar 8 2021 11:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32552 * 1 3 3 C 1.47823 * 120.00465 * 2 1 4 4 C 1.39258 * 120.07114 * 245.67458 * 3 2 1 5 5 C 1.39422 * 119.70433 * 179.97438 * 4 3 2 6 6 C 1.43196 * 120.08602 * 180.02562 * 5 4 3 7 7 N 5.94647 * 127.88450 * 318.53449 * 2 1 3 8 8 C 1.39686 * 119.83222 * 359.97438 * 5 4 3 9 9 C 1.38073 * 120.13594 * 359.73534 * 8 5 4 10 10 C 1.38068 * 120.30341 * 0.54308 * 9 8 5 11 11 C 1.50706 * 119.92259 * 179.72532 * 10 9 8 12 12 O 1.42903 * 109.47104 * 255.31098 * 11 10 9 13 13 Si 1.86301 * 109.46776 * 15.30930 * 11 10 9 14 14 H 1.48506 * 109.47034 * 60.00255 * 13 11 10 15 15 H 1.48495 * 109.46895 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47140 * 299.99989 * 13 11 10 17 17 Si 1.86808 * 119.99511 * 180.02562 * 2 1 3 18 18 C 1.86295 * 109.47073 * 265.02879 * 17 2 1 19 19 C 1.86295 * 109.47081 * 25.02702 * 17 2 1 20 20 C 1.86298 * 109.46862 * 145.02850 * 17 2 1 21 21 H 1.08005 * 119.99492 * 5.04793 * 1 2 3 22 22 H 1.08002 * 120.00703 * 185.05432 * 1 2 3 23 23 H 1.07997 * 120.14865 * 359.95201 * 4 3 2 24 24 H 1.07998 * 119.93319 * 180.02562 * 8 5 4 25 25 H 1.08005 * 119.85145 * 180.28967 * 9 8 5 26 26 H 1.08997 * 109.47214 * 135.30842 * 11 10 9 27 27 H 0.96700 * 114.00013 * 60.00135 * 12 11 10 28 28 H 1.09003 * 109.47454 * 59.99681 * 18 17 2 29 29 H 1.08997 * 109.47236 * 180.02562 * 18 17 2 30 30 H 1.09004 * 109.47190 * 299.99956 * 18 17 2 31 31 H 1.08998 * 109.47400 * 60.00273 * 19 17 2 32 32 H 1.09004 * 109.47181 * 179.97438 * 19 17 2 33 33 H 1.09000 * 109.47352 * 299.99863 * 19 17 2 34 34 H 1.08994 * 109.47284 * 64.98358 * 20 17 2 35 35 H 1.09005 * 109.46760 * 184.98281 * 20 17 2 36 36 H 1.08997 * 109.47179 * 304.97624 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3255 0.0000 0.0000 3 6 2.0647 1.2801 0.0000 4 6 2.8436 1.6362 -1.0982 5 6 3.5372 2.8456 -1.0902 6 6 4.3400 3.2201 -2.2153 7 7 4.9771 3.5169 -3.1077 8 6 3.4461 3.6916 0.0175 9 6 2.6671 3.3347 1.1002 10 6 1.9824 2.1357 1.1007 11 6 1.1396 1.7518 2.2897 12 8 1.8177 0.7503 3.0508 13 14 0.8499 3.2520 3.3557 14 1 0.1452 4.2927 2.5647 15 1 0.0189 2.8739 4.5268 16 1 2.1541 3.7852 3.8249 17 14 2.2594 -1.6179 -0.0007 18 6 2.7017 -2.0804 1.7489 19 6 1.1915 -2.9510 -0.7444 20 6 3.8164 -1.4356 -1.0074 21 1 -0.5399 0.9318 -0.0823 22 1 -0.5401 -0.9316 0.0824 23 1 2.9103 0.9782 -1.9520 24 1 3.9823 4.6290 0.0252 25 1 2.5963 3.9945 1.9524 26 1 0.1824 1.3605 1.9453 27 1 2.6790 1.0301 3.3900 28 1 1.7907 -2.1869 2.3379 29 1 3.2470 -3.0241 1.7484 30 1 3.3265 -1.3004 2.1840 31 1 0.9327 -2.6805 -1.7680 32 1 1.7366 -3.8949 -0.7452 33 1 0.2806 -3.0576 -0.1554 34 1 4.4802 -0.7194 -0.5234 35 1 4.3161 -2.4015 -1.0817 36 1 3.5637 -1.0796 -2.0061 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_16735462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:56:42 Heat of formation + Delta-G solvation = -5.186847 kcal Electronic energy + Delta-G solvation = -17507.027695 eV Core-core repulsion = 14887.010152 eV Total energy + Delta-G solvation = -2620.017544 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 261.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.02067 -38.11276 -37.09298 -35.08932 -32.94367 -30.88616 -29.50421 -28.36711 -28.30831 -27.55012 -24.26703 -23.30262 -21.61728 -18.87011 -18.42156 -17.16251 -16.83232 -16.08224 -15.94445 -15.47923 -15.16660 -14.95590 -14.63440 -14.33165 -14.12918 -13.97709 -13.88797 -13.79581 -13.48929 -13.29448 -13.24340 -13.18489 -13.09314 -12.99501 -12.63545 -12.23168 -12.19116 -11.78998 -11.17935 -11.00706 -10.88916 -10.45805 -10.31562 -10.06596 -9.50670 -0.40783 0.07142 0.97788 1.07316 1.32475 1.44204 1.66021 1.69335 1.83755 1.86396 1.94916 2.15169 2.59329 2.78018 2.84109 3.40809 3.56766 3.68364 3.74692 4.06332 4.22269 4.44220 4.56085 4.67305 4.67975 4.71604 4.73385 4.76833 4.80277 4.91408 4.93689 4.96650 5.10659 5.25031 5.33375 5.45517 5.52708 5.61461 5.70440 5.74198 6.49670 6.49924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.365 4.365 3 C -0.005 4.005 4 C -0.071 4.071 5 C -0.018 4.018 6 C 0.250 3.750 7 N -0.409 5.409 8 C -0.072 4.072 9 C -0.125 4.125 10 C -0.089 4.089 11 C -0.081 4.081 12 O -0.526 6.526 13 Si 0.939 3.061 14 H -0.248 1.248 15 H -0.251 1.251 16 H -0.249 1.249 17 Si 1.052 2.948 18 C -0.437 4.437 19 C -0.451 4.451 20 C -0.451 4.451 21 H 0.095 0.905 22 H 0.108 0.892 23 H 0.138 0.862 24 H 0.136 0.864 25 H 0.133 0.867 26 H 0.121 0.879 27 H 0.374 0.626 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 -1.382 3.553 4.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.405 4.405 3 C -0.006 4.006 4 C -0.091 4.091 5 C -0.021 4.021 6 C -0.066 4.066 7 N -0.084 5.084 8 C -0.092 4.092 9 C -0.143 4.143 10 C -0.090 4.090 11 C -0.192 4.192 12 O -0.330 6.330 13 Si 0.762 3.238 14 H -0.172 1.172 15 H -0.175 1.175 16 H -0.173 1.173 17 Si 1.244 2.756 18 C -0.545 4.545 19 C -0.559 4.559 20 C -0.558 4.558 21 H 0.113 0.887 22 H 0.126 0.874 23 H 0.156 0.844 24 H 0.154 0.846 25 H 0.151 0.849 26 H 0.139 0.861 27 H 0.221 0.779 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.163 -0.460 2.534 3.363 hybrid contribution 0.279 0.100 0.056 0.302 sum -1.884 -0.360 2.590 3.222 Atomic orbital electron populations 1.24216 0.95307 1.02075 0.94610 1.27807 1.00955 1.07440 1.04331 1.18674 0.96035 0.93692 0.92157 1.21393 0.94620 0.94589 0.98490 1.15931 0.99069 0.96657 0.90453 1.25701 0.93639 0.94023 0.93222 1.81310 1.09340 1.07528 1.10240 1.21126 0.97579 0.98952 0.91585 1.21001 0.97724 0.96542 0.98983 1.20636 0.98083 0.93812 0.96507 1.25046 0.98269 1.02254 0.93630 1.86578 1.36437 1.39528 1.70495 0.85847 0.81534 0.76391 0.80061 1.17162 1.17489 1.17326 0.78327 0.65940 0.63257 0.68114 1.25990 1.05613 1.04822 1.18041 1.26180 1.09870 1.12735 1.07080 1.26202 1.15839 1.04812 1.08952 0.88703 0.87411 0.84391 0.84644 0.84904 0.86096 0.77873 0.90895 0.91787 0.90844 0.91168 0.90934 0.91117 0.91031 0.90995 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.31 11.80 28.82 0.34 0.65 16 2 C -0.36 0.75 3.53 -37.57 -0.13 0.62 16 3 C -0.01 0.01 4.90 -105.07 -0.51 -0.51 16 4 C -0.07 0.07 8.56 -38.76 -0.33 -0.26 16 5 C -0.02 0.01 5.73 -106.99 -0.61 -0.61 16 6 C 0.25 0.53 15.32 -22.48 -0.34 0.18 16 7 N -0.41 -2.01 18.54 41.84 0.78 -1.23 16 8 C -0.07 0.11 9.74 -39.10 -0.38 -0.27 16 9 C -0.12 0.26 8.63 -39.70 -0.34 -0.09 16 10 C -0.09 0.16 5.28 -104.15 -0.55 -0.39 16 11 C -0.08 0.19 2.11 36.01 0.08 0.26 16 12 O -0.53 1.16 12.72 -35.23 -0.45 0.71 16 13 Si 0.94 -1.94 25.50 -169.99 -4.33 -6.27 16 14 H -0.25 0.29 7.11 56.52 0.40 0.70 16 15 H -0.25 0.08 7.11 56.52 0.40 0.48 16 16 H -0.25 0.58 6.72 56.52 0.38 0.96 16 17 Si 1.05 -3.00 12.28 -169.99 -2.09 -5.09 16 18 C -0.44 0.72 8.65 101.05 0.87 1.59 16 19 C -0.45 0.97 8.42 101.05 0.85 1.82 16 20 C -0.45 0.82 7.72 101.05 0.78 1.60 16 21 H 0.09 -0.25 7.87 -52.48 -0.41 -0.67 16 22 H 0.11 -0.38 7.19 -52.49 -0.38 -0.76 16 23 H 0.14 -0.27 6.98 -52.49 -0.37 -0.63 16 24 H 0.14 -0.41 8.06 -52.49 -0.42 -0.83 16 25 H 0.13 -0.45 4.86 -52.48 -0.26 -0.70 16 26 H 0.12 -0.32 5.83 -51.93 -0.30 -0.62 16 27 H 0.37 -1.91 8.70 45.56 0.40 -1.51 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 29 H 0.06 -0.10 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.11 7.83 -51.93 -0.41 -0.52 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.16 7.62 -51.93 -0.40 -0.56 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.13 7.20 -51.93 -0.37 -0.50 16 LS Contribution 310.29 15.07 4.68 4.68 Total: 0.00 -5.04 310.29 -5.92 -10.96 By element: Atomic # 1 Polarization: -4.13 SS G_CDS: -4.22 Total: -8.35 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.29 Total: 4.59 kcal Atomic # 7 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: -0.45 Total: 0.71 kcal Atomic # 14 Polarization: -4.94 SS G_CDS: -6.42 Total: -11.36 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -5.04 -5.92 -10.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_16735462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.776 kcal (2) G-P(sol) polarization free energy of solvation -5.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds