Wall clock time and date at job start Mon Mar 8 2021 11:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32572 * 1 3 3 C 1.47819 * 119.99796 * 2 1 4 4 C 1.39522 * 120.13631 * 359.97438 * 3 2 1 5 5 C 1.37997 * 119.86446 * 180.02562 * 4 3 2 6 6 C 1.38310 * 120.15124 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.86126 * 180.02562 * 6 5 4 8 8 O 1.42897 * 109.47170 * 104.65967 * 7 6 5 9 9 Si 1.86301 * 109.46967 * 344.65773 * 7 6 5 10 10 H 1.48502 * 109.47076 * 65.73190 * 9 7 6 11 11 H 1.48503 * 109.46962 * 185.72844 * 9 7 6 12 12 H 1.48491 * 109.47642 * 305.73071 * 9 7 6 13 13 C 1.38425 * 120.28215 * 359.97438 * 6 5 4 14 14 I 2.09492 * 119.93876 * 180.02562 * 13 6 5 15 15 C 1.38022 * 120.12598 * 359.76055 * 13 6 5 16 16 Si 1.86799 * 120.00094 * 180.02562 * 2 1 3 17 17 C 1.86297 * 109.47022 * 0.02562 * 16 2 1 18 18 C 1.86300 * 109.47228 * 119.99968 * 16 2 1 19 19 C 1.86303 * 109.46975 * 239.99938 * 16 2 1 20 20 H 1.07997 * 119.99653 * 179.97438 * 1 2 3 21 21 H 1.07995 * 120.00083 * 359.72303 * 1 2 3 22 22 H 1.08000 * 120.06440 * 0.02653 * 4 3 2 23 23 H 1.08001 * 119.92303 * 179.97438 * 5 4 3 24 24 H 1.09007 * 109.46874 * 224.66321 * 7 6 5 25 25 H 0.96701 * 114.00329 * 299.99782 * 8 7 6 26 26 H 1.07997 * 120.07673 * 180.25791 * 15 13 6 27 27 H 1.08994 * 109.47600 * 60.00178 * 17 16 2 28 28 H 1.09006 * 109.47197 * 180.02562 * 17 16 2 29 29 H 1.09003 * 109.46935 * 299.99854 * 17 16 2 30 30 H 1.08998 * 109.47003 * 59.99468 * 18 16 2 31 31 H 1.08993 * 109.47011 * 179.97438 * 18 16 2 32 32 H 1.09005 * 109.47045 * 300.00340 * 18 16 2 33 33 H 1.08995 * 109.47012 * 59.99907 * 19 16 2 34 34 H 1.08993 * 109.47204 * 179.97438 * 19 16 2 35 35 H 1.09000 * 109.47066 * 299.99785 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2802 0.0000 4 6 1.3700 2.4901 -0.0005 5 6 2.0656 3.6819 -0.0011 6 6 3.4487 3.6791 -0.0005 7 6 4.2017 4.9844 -0.0005 8 8 4.7346 5.2269 1.3030 9 14 3.0450 6.3686 -0.4660 10 1 2.0133 6.5279 0.5902 11 1 3.8139 7.6319 -0.6014 12 1 2.3857 6.0496 -1.7578 13 6 4.1442 2.4823 0.0011 14 53 6.2391 2.4905 0.0027 15 6 3.4602 1.2835 0.0071 16 14 2.2597 -1.6177 -0.0007 17 6 1.0491 -3.0337 -0.0021 18 6 3.3308 -1.7157 -1.5219 19 6 3.3308 -1.7170 1.5204 20 1 -0.5399 -0.9353 -0.0004 21 1 -0.5400 0.9352 0.0045 22 1 0.2900 2.4939 -0.0005 23 1 1.5287 4.6191 -0.0019 24 1 5.0167 4.9337 -0.7227 25 1 4.0642 5.2843 1.9976 26 1 4.0036 0.3502 0.0126 27 1 0.4228 -2.9755 -0.8923 28 1 1.5941 -3.9777 -0.0021 29 1 0.4221 -2.9766 0.8877 30 1 4.0390 -0.8872 -1.5216 31 1 3.8761 -2.6594 -1.5221 32 1 2.7041 -1.6576 -2.4119 33 1 2.7042 -1.6597 2.4103 34 1 3.8755 -2.6611 1.5202 35 1 4.0391 -0.8885 1.5207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_16922504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:57:11 Heat of formation + Delta-G solvation = -16.911507 kcal Electronic energy + Delta-G solvation = -16424.888442 eV Core-core repulsion = 13791.925624 eV Total energy + Delta-G solvation = -2632.962818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 362.007 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.92494 -37.86595 -35.26788 -33.26001 -31.58160 -29.70282 -28.97604 -28.45441 -28.44921 -26.50219 -23.69493 -23.04737 -20.10467 -18.62786 -17.27821 -17.06331 -16.37438 -15.95571 -15.35172 -14.97654 -14.55171 -14.45385 -14.20263 -14.18423 -14.00281 -13.67769 -13.43864 -13.32981 -13.28889 -13.15385 -12.92159 -12.38784 -12.22149 -12.12431 -11.84360 -11.62222 -11.16427 -10.99147 -10.85346 -10.70820 -10.60244 -10.43990 -9.85398 -9.25135 -0.28249 0.11191 0.23109 1.06735 1.14739 1.35873 1.46847 1.60336 1.75668 1.85796 1.99357 2.46815 2.70509 3.39423 3.54800 3.71413 3.77556 4.04572 4.18048 4.43828 4.52711 4.59750 4.63258 4.66747 4.67185 4.68799 4.71925 4.72256 4.76027 4.99606 5.15198 5.18309 5.29047 5.39535 5.50435 5.51470 5.65651 5.77410 6.51890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.373 4.373 3 C -0.021 4.021 4 C -0.099 4.099 5 C -0.116 4.116 6 C -0.095 4.095 7 C -0.091 4.091 8 O -0.524 6.524 9 Si 0.949 3.051 10 H -0.250 1.250 11 H -0.249 1.249 12 H -0.249 1.249 13 C -0.071 4.071 14 I -0.027 7.027 15 C -0.092 4.092 16 Si 1.039 2.961 17 C -0.448 4.448 18 C -0.450 4.450 19 C -0.451 4.451 20 H 0.110 0.890 21 H 0.097 0.903 22 H 0.133 0.867 23 H 0.129 0.871 24 H 0.120 0.880 25 H 0.374 0.626 26 H 0.137 0.863 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 -1.459 -0.109 3.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.415 4.415 3 C -0.023 4.023 4 C -0.117 4.117 5 C -0.136 4.136 6 C -0.098 4.098 7 C -0.201 4.201 8 O -0.328 6.328 9 Si 0.771 3.229 10 H -0.173 1.173 11 H -0.173 1.173 12 H -0.172 1.172 13 C -0.212 4.212 14 I 0.123 6.877 15 C -0.112 4.112 16 Si 1.232 2.768 17 C -0.556 4.556 18 C -0.558 4.558 19 C -0.558 4.558 20 H 0.128 0.872 21 H 0.115 0.885 22 H 0.151 0.849 23 H 0.146 0.854 24 H 0.138 0.862 25 H 0.221 0.779 26 H 0.155 0.845 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.771 -0.720 -0.667 2.025 hybrid contribution -1.614 -0.242 0.387 1.677 sum -3.385 -0.961 -0.280 3.530 Atomic orbital electron populations 1.24459 0.95703 1.02316 0.93871 1.28018 1.01202 1.07967 1.04318 1.18987 0.92304 0.93325 0.97660 1.21427 1.00420 0.91481 0.98372 1.21013 0.92949 0.98773 1.00827 1.20238 0.93753 0.95119 1.00725 1.25140 1.05333 0.99469 0.90206 1.86604 1.36436 1.94206 1.15566 0.85701 0.77909 0.78035 0.81290 1.17331 1.17285 1.17210 1.24177 0.96364 0.94785 1.05832 1.96893 0.92782 1.99486 1.98520 1.21377 0.93685 0.97163 0.98989 0.78499 0.66643 0.63692 0.67979 1.26120 1.11268 1.13647 1.04611 1.26199 1.09699 1.04766 1.15136 1.26203 1.09699 1.04767 1.15132 0.87223 0.88476 0.84934 0.85367 0.86210 0.77898 0.84539 0.90989 0.90690 0.90998 0.91109 0.90781 0.90917 0.90925 0.90780 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.22 13.39 28.83 0.39 0.61 16 2 C -0.37 0.33 4.70 -37.57 -0.18 0.15 16 3 C -0.02 -0.01 5.84 -105.01 -0.61 -0.62 16 4 C -0.10 -0.01 9.40 -39.19 -0.37 -0.38 16 5 C -0.12 -0.02 8.64 -39.64 -0.34 -0.36 16 6 C -0.10 -0.09 5.26 -104.53 -0.55 -0.64 16 7 C -0.09 -0.03 1.95 36.01 0.07 0.04 16 8 O -0.52 -0.23 12.53 -35.23 -0.44 -0.67 16 9 Si 0.95 -0.37 25.30 -169.99 -4.30 -4.67 16 10 H -0.25 0.20 6.96 56.52 0.39 0.60 16 11 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 12 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 13 C -0.07 -0.11 6.19 -39.59 -0.25 -0.36 16 14 I -0.03 -0.05 38.09 -73.02 -2.78 -2.83 16 15 C -0.09 -0.09 8.41 -39.17 -0.33 -0.42 16 16 Si 1.04 -2.33 10.80 -169.99 -1.84 -4.17 16 17 C -0.45 0.95 7.86 101.05 0.79 1.75 16 18 C -0.45 0.56 8.65 101.05 0.87 1.44 16 19 C -0.45 0.55 8.65 101.05 0.87 1.42 16 20 H 0.11 -0.34 7.05 -52.49 -0.37 -0.71 16 21 H 0.10 -0.23 6.04 -52.49 -0.32 -0.55 16 22 H 0.13 -0.24 6.17 -52.49 -0.32 -0.56 16 23 H 0.13 -0.18 5.02 -52.49 -0.26 -0.45 16 24 H 0.12 0.07 6.97 -51.93 -0.36 -0.29 16 25 H 0.37 -1.01 8.70 45.56 0.40 -0.61 16 26 H 0.14 -0.02 3.71 -52.49 -0.19 -0.21 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 30 H 0.07 -0.06 6.60 -51.93 -0.34 -0.40 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.05 6.55 -51.93 -0.34 -0.39 16 LS Contribution 309.39 15.07 4.66 4.66 Total: 0.00 -3.77 309.39 -8.14 -11.91 By element: Atomic # 1 Polarization: -3.05 SS G_CDS: -3.81 Total: -6.86 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 0.37 Total: 2.64 kcal Atomic # 8 Polarization: -0.23 SS G_CDS: -0.44 Total: -0.67 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: -6.14 Total: -8.84 kcal Atomic # 53 Polarization: -0.05 SS G_CDS: -2.78 Total: -2.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -3.77 -8.14 -11.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_16922504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.004 kcal (2) G-P(sol) polarization free energy of solvation -3.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds