Wall clock time and date at job start Mon Mar 8 2021 11:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32572 * 1 3 3 C 1.47819 * 119.99796 * 2 1 4 4 C 1.39522 * 120.13631 * 359.97438 * 3 2 1 5 5 C 1.37997 * 119.86446 * 180.02562 * 4 3 2 6 6 C 1.38310 * 120.15124 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.86126 * 180.02562 * 6 5 4 8 8 O 1.42897 * 109.47170 * 104.65967 * 7 6 5 9 9 Si 1.86301 * 109.46967 * 344.65773 * 7 6 5 10 10 H 1.48502 * 109.47076 * 65.73190 * 9 7 6 11 11 H 1.48503 * 109.46962 * 185.72844 * 9 7 6 12 12 H 1.48491 * 109.47642 * 305.73071 * 9 7 6 13 13 C 1.38425 * 120.28215 * 359.97438 * 6 5 4 14 14 I 2.09492 * 119.93876 * 180.02562 * 13 6 5 15 15 C 1.38022 * 120.12598 * 359.76055 * 13 6 5 16 16 Si 1.86799 * 120.00094 * 180.02562 * 2 1 3 17 17 C 1.86297 * 109.47022 * 0.02562 * 16 2 1 18 18 C 1.86300 * 109.47228 * 119.99968 * 16 2 1 19 19 C 1.86303 * 109.46975 * 239.99938 * 16 2 1 20 20 H 1.07997 * 119.99653 * 179.97438 * 1 2 3 21 21 H 1.07995 * 120.00083 * 359.72303 * 1 2 3 22 22 H 1.08000 * 120.06440 * 0.02653 * 4 3 2 23 23 H 1.08001 * 119.92303 * 179.97438 * 5 4 3 24 24 H 1.09007 * 109.46874 * 224.66321 * 7 6 5 25 25 H 0.96701 * 114.00329 * 299.99782 * 8 7 6 26 26 H 1.07997 * 120.07673 * 180.25791 * 15 13 6 27 27 H 1.08994 * 109.47600 * 60.00178 * 17 16 2 28 28 H 1.09006 * 109.47197 * 180.02562 * 17 16 2 29 29 H 1.09003 * 109.46935 * 299.99854 * 17 16 2 30 30 H 1.08998 * 109.47003 * 59.99468 * 18 16 2 31 31 H 1.08993 * 109.47011 * 179.97438 * 18 16 2 32 32 H 1.09005 * 109.47045 * 300.00340 * 18 16 2 33 33 H 1.08995 * 109.47012 * 59.99907 * 19 16 2 34 34 H 1.08993 * 109.47204 * 179.97438 * 19 16 2 35 35 H 1.09000 * 109.47066 * 299.99785 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2802 0.0000 4 6 1.3700 2.4901 -0.0005 5 6 2.0656 3.6819 -0.0011 6 6 3.4487 3.6791 -0.0005 7 6 4.2017 4.9844 -0.0005 8 8 4.7346 5.2269 1.3030 9 14 3.0450 6.3686 -0.4660 10 1 2.0133 6.5279 0.5902 11 1 3.8139 7.6319 -0.6014 12 1 2.3857 6.0496 -1.7578 13 6 4.1442 2.4823 0.0011 14 53 6.2391 2.4905 0.0027 15 6 3.4602 1.2835 0.0071 16 14 2.2597 -1.6177 -0.0007 17 6 1.0491 -3.0337 -0.0021 18 6 3.3308 -1.7157 -1.5219 19 6 3.3308 -1.7170 1.5204 20 1 -0.5399 -0.9353 -0.0004 21 1 -0.5400 0.9352 0.0045 22 1 0.2900 2.4939 -0.0005 23 1 1.5287 4.6191 -0.0019 24 1 5.0167 4.9337 -0.7227 25 1 4.0642 5.2843 1.9976 26 1 4.0036 0.3502 0.0126 27 1 0.4228 -2.9755 -0.8923 28 1 1.5941 -3.9777 -0.0021 29 1 0.4221 -2.9766 0.8877 30 1 4.0390 -0.8872 -1.5216 31 1 3.8761 -2.6594 -1.5221 32 1 2.7041 -1.6576 -2.4119 33 1 2.7042 -1.6597 2.4103 34 1 3.8755 -2.6611 1.5202 35 1 4.0391 -0.8885 1.5207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_16922504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:57:11 Heat of formation + Delta-G solvation = -6.958219 kcal Electronic energy + Delta-G solvation = -16424.456835 eV Core-core repulsion = 13791.925624 eV Total energy + Delta-G solvation = -2632.531211 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 362.007 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.90996 -37.84786 -35.20414 -33.26176 -31.52032 -29.58546 -28.96739 -28.33950 -28.30897 -26.46982 -23.66910 -23.01386 -20.02591 -18.60530 -17.25306 -17.00342 -16.35580 -15.93149 -15.32699 -14.91982 -14.47973 -14.38856 -14.13813 -14.05156 -13.87923 -13.60666 -13.34592 -13.21939 -13.17527 -13.02253 -12.77808 -12.37999 -12.20304 -12.11753 -11.79960 -11.62064 -11.16837 -10.83559 -10.74060 -10.68180 -10.61103 -10.42793 -9.89183 -9.19881 -0.24816 0.10102 0.16865 1.08798 1.25006 1.39279 1.48550 1.77504 1.86585 1.95482 2.11832 2.61447 2.74018 3.43744 3.59499 3.75583 3.86199 4.10703 4.20542 4.45533 4.55156 4.71429 4.76328 4.76580 4.78835 4.82455 4.83913 4.86266 4.88792 5.06008 5.19603 5.21754 5.38950 5.55131 5.60958 5.65900 5.73195 5.86089 6.67774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.393 4.393 3 C -0.027 4.027 4 C -0.106 4.106 5 C -0.119 4.119 6 C -0.104 4.104 7 C -0.093 4.093 8 O -0.537 6.537 9 Si 0.982 3.018 10 H -0.237 1.237 11 H -0.272 1.272 12 H -0.257 1.257 13 C -0.083 4.083 14 I -0.039 7.039 15 C -0.103 4.103 16 Si 1.087 2.913 17 C -0.454 4.454 18 C -0.465 4.465 19 C -0.465 4.465 20 H 0.125 0.875 21 H 0.104 0.896 22 H 0.152 0.848 23 H 0.144 0.856 24 H 0.112 0.888 25 H 0.387 0.613 26 H 0.141 0.859 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 -1.731 0.050 4.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.434 4.434 3 C -0.029 4.029 4 C -0.124 4.124 5 C -0.138 4.138 6 C -0.107 4.107 7 C -0.204 4.204 8 O -0.343 6.343 9 Si 0.804 3.196 10 H -0.160 1.160 11 H -0.197 1.197 12 H -0.181 1.181 13 C -0.223 4.223 14 I 0.111 6.889 15 C -0.123 4.123 16 Si 1.276 2.724 17 C -0.562 4.562 18 C -0.571 4.571 19 C -0.571 4.571 20 H 0.143 0.857 21 H 0.122 0.878 22 H 0.169 0.831 23 H 0.162 0.838 24 H 0.130 0.870 25 H 0.236 0.764 26 H 0.159 0.841 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.207 -0.997 -0.493 3.394 hybrid contribution -1.180 -0.169 0.339 1.240 sum -4.387 -1.166 -0.154 4.542 Atomic orbital electron populations 1.24721 0.95474 1.03448 0.92077 1.28209 1.01767 1.07833 1.05622 1.19219 0.92211 0.94262 0.97205 1.21720 1.01488 0.91268 0.97926 1.21214 0.92654 0.99590 1.00371 1.20359 0.94255 0.95049 1.01063 1.25215 1.05310 0.99758 0.90068 1.86568 1.37511 1.94197 1.16050 0.85236 0.77233 0.76107 0.80993 1.16035 1.19673 1.18062 1.24239 0.95826 0.95444 1.06837 1.96856 0.93986 1.99500 1.98562 1.21518 0.94219 0.97218 0.99391 0.77753 0.65542 0.63002 0.66106 1.26163 1.11424 1.13549 1.05071 1.26380 1.10019 1.04587 1.16132 1.26383 1.10009 1.04567 1.16140 0.85692 0.87820 0.83061 0.83848 0.87038 0.76442 0.84137 0.90523 0.90603 0.90526 0.91895 0.90533 0.90985 0.90992 0.90539 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.59 13.39 66.67 0.89 1.48 16 2 C -0.39 0.91 4.70 23.65 0.11 1.02 16 3 C -0.03 -0.03 5.84 -20.12 -0.12 -0.15 16 4 C -0.11 0.05 9.40 22.52 0.21 0.26 16 5 C -0.12 0.02 8.64 22.23 0.19 0.21 16 6 C -0.10 -0.23 5.26 -19.80 -0.10 -0.34 16 7 C -0.09 -0.11 1.95 71.24 0.14 0.03 16 8 O -0.54 -0.76 12.53 -148.98 -1.87 -2.63 16 9 Si 0.98 -0.83 25.30 68.60 1.74 0.90 16 10 H -0.24 0.70 6.96 99.48 0.69 1.39 16 11 H -0.27 -0.74 7.11 99.48 0.71 -0.03 16 12 H -0.26 -0.09 7.11 99.48 0.71 0.62 16 13 C -0.08 -0.34 6.19 22.26 0.14 -0.20 16 14 I -0.04 -0.19 38.09 -18.82 -0.72 -0.91 16 15 C -0.10 -0.28 8.41 22.53 0.19 -0.09 16 16 Si 1.09 -5.02 10.80 68.60 0.74 -4.28 16 17 C -0.45 2.36 7.86 113.37 0.89 3.25 16 18 C -0.46 0.93 8.65 113.37 0.98 1.91 16 19 C -0.46 0.91 8.65 113.37 0.98 1.89 16 20 H 0.13 -1.01 7.05 -2.91 -0.02 -1.04 16 21 H 0.10 -0.67 6.04 -2.91 -0.02 -0.69 16 22 H 0.15 -0.76 6.17 -2.91 -0.02 -0.78 16 23 H 0.14 -0.56 5.02 -2.91 -0.01 -0.58 16 24 H 0.11 0.27 6.97 -2.38 -0.02 0.25 16 25 H 0.39 -2.01 8.70 -74.06 -0.64 -2.65 16 26 H 0.14 0.13 3.71 -2.91 -0.01 0.12 16 27 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 28 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 29 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 30 H 0.06 -0.02 6.60 -2.39 -0.02 -0.04 16 31 H 0.08 -0.21 7.96 -2.39 -0.02 -0.23 16 32 H 0.07 -0.14 7.96 -2.38 -0.02 -0.16 16 33 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 34 H 0.08 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.06 -0.02 6.55 -2.39 -0.02 -0.03 16 Total: 0.00 -8.80 309.39 5.60 -3.20 By element: Atomic # 1 Polarization: -6.77 SS G_CDS: 1.20 Total: -5.57 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 4.51 Total: 9.28 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: -1.87 Total: -2.63 kcal Atomic # 14 Polarization: -5.85 SS G_CDS: 2.48 Total: -3.38 kcal Atomic # 53 Polarization: -0.19 SS G_CDS: -0.72 Total: -0.91 kcal Total: -8.80 5.60 -3.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_16922504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.759 kcal (2) G-P(sol) polarization free energy of solvation -8.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds