Wall clock time and date at job start Mon Mar 8 2021 11:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32706 * 1 3 3 C 1.47640 * 119.99989 * 2 1 4 4 C 1.39739 * 119.97936 * 313.27925 * 3 2 1 5 5 C 1.36609 * 120.01664 * 180.27930 * 4 3 2 6 6 C 1.39885 * 119.98009 * 359.42520 * 5 4 3 7 7 C 1.47349 * 120.01809 * 180.25463 * 6 5 4 8 8 O 1.22326 * 119.99967 * 355.60140 * 7 6 5 9 9 O 1.22320 * 120.00229 * 175.59555 * 7 6 5 10 10 C 1.39917 * 119.96718 * 0.28439 * 6 5 4 11 11 C 1.50698 * 120.01159 * 179.97438 * 10 6 5 12 12 O 1.42903 * 109.47115 * 196.46288 * 11 10 6 13 13 Si 1.86296 * 109.47415 * 76.45952 * 11 10 6 14 14 H 1.48503 * 109.47027 * 67.04300 * 13 11 10 15 15 H 1.48496 * 109.47202 * 187.04426 * 13 11 10 16 16 H 1.48499 * 109.47231 * 307.04305 * 13 11 10 17 17 C 1.36582 * 119.98035 * 359.97438 * 10 6 5 18 18 Si 1.86802 * 120.00075 * 179.97438 * 2 1 3 19 19 C 1.86296 * 109.46970 * 265.52653 * 18 2 1 20 20 C 1.86296 * 109.47134 * 25.52912 * 18 2 1 21 21 C 1.86298 * 109.46892 * 145.52621 * 18 2 1 22 22 H 1.08000 * 119.99931 * 179.97438 * 1 2 3 23 23 H 1.07995 * 120.00483 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.99088 * 0.02562 * 4 3 2 25 25 H 1.07999 * 120.01167 * 179.70334 * 5 4 3 26 26 H 1.08994 * 109.47116 * 316.45589 * 11 10 6 27 27 H 0.96698 * 114.00210 * 59.99212 * 12 11 10 28 28 H 1.07997 * 119.99343 * 180.02562 * 17 10 6 29 29 H 1.08998 * 109.47363 * 59.99998 * 19 18 2 30 30 H 1.09001 * 109.46869 * 179.97438 * 19 18 2 31 31 H 1.09001 * 109.47553 * 299.99697 * 19 18 2 32 32 H 1.09000 * 109.47389 * 59.99785 * 20 18 2 33 33 H 1.09001 * 109.47328 * 179.97438 * 20 18 2 34 34 H 1.09004 * 109.47212 * 299.99780 * 20 18 2 35 35 H 1.09004 * 109.47359 * 65.42216 * 21 18 2 36 36 H 1.09006 * 109.47157 * 185.41581 * 21 18 2 37 37 H 1.09003 * 109.47572 * 305.42041 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3271 0.0000 0.0000 3 6 2.0653 1.2786 0.0000 4 6 1.6957 2.2982 -0.8812 5 6 2.3819 3.4795 -0.8858 6 6 3.4469 3.6727 0.0002 7 6 4.1840 4.9486 -0.0002 8 8 3.9179 5.8084 -0.8286 9 8 5.0619 5.1480 0.8279 10 6 3.8124 2.6535 0.8865 11 6 4.9600 2.8603 1.8410 12 8 5.3860 1.5967 2.3547 13 14 4.4086 3.9490 3.2486 14 1 3.3994 3.2283 4.0657 15 1 5.5783 4.2923 4.0965 16 1 3.8083 5.1940 2.7057 17 6 3.1288 1.4711 0.8862 18 14 2.2611 -1.6177 0.0007 19 6 2.6902 -2.0862 1.7520 20 6 1.1990 -2.9484 -0.7556 21 6 3.8256 -1.4319 -0.9936 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5401 0.9352 -0.0004 24 1 0.8701 2.1508 -1.5616 25 1 2.0993 4.2657 -1.5702 26 1 5.7879 3.3367 1.3161 27 1 5.6875 0.9775 1.6759 28 1 3.4105 0.6845 1.5704 29 1 1.7749 -2.1949 2.3338 30 1 3.2348 -3.0304 1.7524 31 1 3.3117 -1.3077 2.1946 32 1 0.9479 -2.6742 -1.7803 33 1 1.7442 -3.8922 -0.7557 34 1 0.2836 -3.0571 -0.1739 35 1 4.4890 -0.7231 -0.4980 36 1 4.3220 -2.3990 -1.0740 37 1 3.5812 -1.0649 -1.9904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_18352972.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:58:06 Heat of formation + Delta-G solvation = -199.112971 kcal Electronic energy + Delta-G solvation = -19964.638568 eV Core-core repulsion = 16906.155163 eV Total energy + Delta-G solvation = -3058.483405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.01593 -38.98693 -37.61903 -35.08332 -34.66127 -32.15580 -30.64336 -29.34010 -28.19754 -28.11527 -26.75855 -24.64252 -22.57759 -20.97248 -20.01534 -18.40099 -17.28409 -16.87518 -16.52864 -16.19294 -15.51330 -15.29002 -15.10765 -15.02647 -14.66181 -14.06590 -13.94358 -13.81934 -13.72319 -13.47367 -13.35801 -13.06890 -13.01393 -12.90485 -12.60704 -12.34692 -12.25927 -12.11349 -11.61314 -11.22049 -11.08210 -10.76922 -10.68772 -10.28439 -10.22821 -10.09180 -9.70081 -9.59756 -9.10159 -0.04309 0.43521 1.24126 1.29119 1.48929 1.65001 1.89113 2.12975 2.16962 2.31170 2.67360 2.83987 3.54453 3.78911 3.80292 3.99492 4.09675 4.13665 4.46132 4.63197 4.80445 4.85332 4.89305 4.92373 4.94517 4.97368 4.99418 5.00574 5.05603 5.17018 5.35070 5.44759 5.59655 5.66145 5.67868 5.74849 5.80287 5.89225 6.13552 6.78318 7.86294 8.22841 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.006813 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.436535 B = 4108.989960 C = 4790.738512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.394 4.394 3 C -0.018 4.018 4 C -0.135 4.135 5 C -0.089 4.089 6 C -0.194 4.194 7 C 0.501 3.499 8 O -0.732 6.732 9 O -0.692 6.692 10 C -0.082 4.082 11 C -0.083 4.083 12 O -0.545 6.545 13 Si 1.081 2.919 14 H -0.264 1.264 15 H -0.257 1.257 16 H -0.314 1.314 17 C -0.127 4.127 18 Si 1.101 2.899 19 C -0.457 4.457 20 C -0.442 4.442 21 C -0.467 4.467 22 H 0.138 0.862 23 H 0.082 0.918 24 H 0.145 0.855 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.376 0.624 28 H 0.160 0.840 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.858 -23.117 1.637 24.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.432 4.432 3 C -0.018 4.018 4 C -0.153 4.153 5 C -0.107 4.107 6 C -0.196 4.196 7 C 0.342 3.658 8 O -0.651 6.651 9 O -0.611 6.611 10 C -0.083 4.083 11 C -0.189 4.189 12 O -0.352 6.352 13 Si 0.906 3.094 14 H -0.190 1.190 15 H -0.181 1.181 16 H -0.243 1.243 17 C -0.145 4.145 18 Si 1.289 2.711 19 C -0.564 4.564 20 C -0.551 4.551 21 C -0.573 4.573 22 H 0.156 0.844 23 H 0.100 0.900 24 H 0.163 0.837 25 H 0.125 0.875 26 H 0.095 0.905 27 H 0.224 0.776 28 H 0.177 0.823 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.070 -21.891 2.860 23.506 hybrid contribution 0.476 0.889 -1.568 1.865 sum -7.594 -21.002 1.292 22.370 Atomic orbital electron populations 1.24574 0.95083 1.02802 0.93635 1.28673 1.01812 1.07810 1.04915 1.19441 0.94436 0.94216 0.93739 1.21215 1.00642 0.92238 1.01181 1.21053 0.94553 0.97995 0.97132 1.21825 1.00120 0.98472 0.99171 1.17343 0.81605 0.85191 0.81699 1.90654 1.75473 1.50704 1.48268 1.90357 1.40494 1.84005 1.46251 1.20313 0.98075 0.94304 0.95618 1.25593 0.97111 0.90949 1.05259 1.86582 1.85965 1.24975 1.37661 0.83571 0.78683 0.74782 0.72367 1.18989 1.18057 1.24252 1.20971 0.95987 0.97033 1.00468 0.77666 0.64744 0.61615 0.67104 1.26224 1.05754 1.05820 1.18600 1.26027 1.09844 1.12004 1.07251 1.26367 1.17301 1.04545 1.09072 0.84393 0.89957 0.83697 0.87468 0.90525 0.77553 0.82301 0.90588 0.89902 0.91775 0.90970 0.89898 0.89934 0.92395 0.90017 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 13.31 66.65 0.89 -1.45 16 2 C -0.39 -8.83 4.40 23.58 0.10 -8.73 16 3 C -0.02 -0.60 5.26 -20.06 -0.11 -0.70 16 4 C -0.14 -5.01 9.27 22.25 0.21 -4.80 16 5 C -0.09 -4.29 9.54 22.29 0.21 -4.08 16 6 C -0.19 -10.72 5.67 -20.07 -0.11 -10.84 16 7 C 0.50 34.35 7.56 70.22 0.53 34.88 16 8 O -0.73 -55.08 17.24 17.69 0.30 -54.77 16 9 O -0.69 -48.04 11.34 17.71 0.20 -47.84 16 10 C -0.08 -3.81 4.45 -19.85 -0.09 -3.89 16 11 C -0.08 -3.73 2.38 71.24 0.17 -3.56 16 12 O -0.55 -18.90 11.40 -148.98 -1.70 -20.60 16 13 Si 1.08 49.69 25.70 68.60 1.76 51.46 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 15 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 16 H -0.31 -18.05 6.32 99.48 0.63 -17.43 16 17 C -0.13 -4.59 8.30 22.25 0.18 -4.41 16 18 Si 1.10 16.21 11.29 68.60 0.77 16.98 16 19 C -0.46 -6.81 8.65 113.37 0.98 -5.83 16 20 C -0.44 -4.71 8.38 113.37 0.95 -3.76 16 21 C -0.47 -8.95 8.65 113.37 0.98 -7.97 16 22 H 0.14 1.56 7.14 -2.91 -0.02 1.54 16 23 H 0.08 1.72 7.84 -2.91 -0.02 1.70 16 24 H 0.15 4.35 7.93 -2.91 -0.02 4.33 16 25 H 0.11 5.41 7.64 -2.91 -0.02 5.38 16 26 H 0.08 3.94 6.20 -2.39 -0.01 3.92 16 27 H 0.38 9.92 8.86 -74.06 -0.66 9.26 16 28 H 0.16 4.65 5.28 -2.91 -0.02 4.63 16 29 H 0.07 1.03 7.96 -2.39 -0.02 1.01 16 30 H 0.08 1.00 7.96 -2.39 -0.02 0.98 16 31 H 0.06 1.13 6.85 -2.39 -0.02 1.11 16 32 H 0.07 0.79 7.96 -2.39 -0.02 0.77 16 33 H 0.08 0.73 7.96 -2.39 -0.02 0.71 16 34 H 0.08 0.69 7.61 -2.39 -0.02 0.68 16 35 H 0.06 1.28 7.96 -2.38 -0.02 1.26 16 36 H 0.08 1.25 7.96 -2.38 -0.02 1.23 16 37 H 0.06 1.22 7.96 -2.39 -0.02 1.20 16 Total: -1.00 -85.04 314.41 7.34 -77.70 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 1.10 Total: 2.20 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.90 Total: -25.13 kcal Atomic # 8 Polarization: -122.01 SS G_CDS: -1.19 Total: -123.21 kcal Atomic # 14 Polarization: 65.90 SS G_CDS: 2.54 Total: 68.44 kcal Total: -85.04 7.34 -77.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_18352972.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.415 kcal (2) G-P(sol) polarization free energy of solvation -85.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds