Wall clock time and date at job start Mon Mar 8 2021 11:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32565 * 1 3 3 C 1.47809 * 120.00331 * 2 1 4 4 C 1.39538 * 120.14628 * 133.73752 * 3 2 1 5 5 C 1.37970 * 119.85346 * 180.24891 * 4 3 2 6 6 C 1.38345 * 120.14784 * 359.47595 * 5 4 3 7 7 C 1.50693 * 119.85787 * 180.29479 * 6 5 4 8 8 O 1.42902 * 109.47098 * 65.00206 * 7 6 5 9 9 Si 1.86304 * 109.46797 * 184.99921 * 7 6 5 10 10 H 1.48499 * 109.47324 * 60.00424 * 9 7 6 11 11 H 1.48506 * 109.47228 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47543 * 299.99979 * 9 7 6 13 13 C 1.38350 * 120.28076 * 0.27651 * 6 5 4 14 14 C 1.37968 * 120.14474 * 359.97435 * 13 6 5 15 15 Si 1.86800 * 119.99803 * 179.97438 * 2 1 3 16 16 C 1.86309 * 109.47199 * 273.09475 * 15 2 1 17 17 C 1.86299 * 109.47083 * 33.09180 * 15 2 1 18 18 C 1.86301 * 109.47157 * 153.09510 * 15 2 1 19 19 H 1.07991 * 120.00537 * 180.02562 * 1 2 3 20 20 H 1.08006 * 119.99855 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.06823 * 0.02562 * 4 3 2 22 22 H 1.08007 * 119.92344 * 179.74979 * 5 4 3 23 23 H 1.08993 * 109.47289 * 304.99846 * 7 6 5 24 24 H 0.96700 * 113.99922 * 60.00250 * 8 7 6 25 25 H 1.07998 * 119.92211 * 180.02562 * 13 6 5 26 26 H 1.07999 * 120.07738 * 180.02562 * 14 13 6 27 27 H 1.09005 * 109.46861 * 59.99724 * 16 15 2 28 28 H 1.08996 * 109.47200 * 179.97438 * 16 15 2 29 29 H 1.08993 * 109.47095 * 300.00325 * 16 15 2 30 30 H 1.09002 * 109.46998 * 60.00239 * 17 15 2 31 31 H 1.09002 * 109.47407 * 179.97438 * 17 15 2 32 32 H 1.08997 * 109.47605 * 300.00431 * 17 15 2 33 33 H 1.08998 * 109.46979 * 65.86144 * 18 15 2 34 34 H 1.08997 * 109.46750 * 185.86016 * 18 15 2 35 35 H 1.08993 * 109.46782 * 305.85890 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 3.1376 1.4697 0.8718 5 6 3.8201 2.6688 0.8703 6 6 3.4497 3.6780 -0.0005 7 6 4.2038 4.9826 -0.0012 8 8 5.5484 4.7554 -0.4287 9 14 3.3756 6.1779 -1.1658 10 1 1.9784 6.4142 -0.7216 11 1 4.1184 7.4639 -1.1661 12 1 3.3695 5.6090 -2.5374 13 6 2.3902 3.4943 -0.8710 14 6 1.6962 2.3019 -0.8759 15 14 2.2596 -1.6178 0.0007 16 6 2.4880 -2.2023 1.7550 17 6 1.2956 -2.8917 -0.9577 18 6 3.9266 -1.3728 -0.7942 19 1 -0.5400 -0.9352 0.0004 20 1 -0.5400 0.9354 -0.0004 21 1 3.4308 0.6810 1.5487 22 1 4.6481 2.8184 1.5475 23 1 4.2083 5.4003 1.0055 24 1 5.6207 4.3836 -1.3184 25 1 2.1062 4.2859 -1.5486 26 1 0.8695 2.1595 -1.5562 27 1 1.5126 -2.3455 2.2201 28 1 3.0325 -3.1464 1.7553 29 1 3.0518 -1.4569 2.3157 30 1 1.1620 -2.5498 -1.9840 31 1 1.8408 -3.8356 -0.9577 32 1 0.3203 -3.0350 -0.4927 33 1 4.5293 -0.7069 -0.1766 34 1 4.4292 -2.3354 -0.8881 35 1 3.7965 -0.9329 -1.7829 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_9007478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:59:30 Heat of formation + Delta-G solvation = -31.231018 kcal Electronic energy + Delta-G solvation = -14587.080110 eV Core-core repulsion = 12287.811398 eV Total energy + Delta-G solvation = -2299.268712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 236.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51712 -37.74295 -34.87178 -32.08941 -31.08060 -29.41992 -28.32193 -28.29207 -26.52120 -23.79308 -22.82200 -20.39765 -18.49953 -17.04247 -16.86706 -16.22189 -15.87953 -15.19076 -15.09007 -14.72139 -14.32145 -14.06512 -13.90977 -13.73181 -13.57941 -13.39831 -13.16383 -13.12669 -12.99697 -12.71245 -12.36072 -12.22275 -12.10080 -11.59130 -11.29375 -10.85438 -10.77885 -10.38457 -10.33055 -9.91352 -9.21584 0.07497 0.43429 1.15302 1.22816 1.41214 1.48681 1.84363 1.87272 2.00326 2.22788 2.63755 2.87495 3.54114 3.73541 3.92059 4.02038 4.06021 4.43308 4.58429 4.64577 4.78789 4.81818 4.84104 4.86047 4.87189 4.88424 4.89411 4.96469 5.07947 5.21391 5.48786 5.51101 5.57381 5.59408 5.66022 5.68147 5.83069 6.06578 6.67725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.389 4.389 3 C -0.035 4.035 4 C -0.127 4.127 5 C -0.096 4.096 6 C -0.135 4.135 7 C -0.077 4.077 8 O -0.552 6.552 9 Si 0.981 3.019 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.254 1.254 13 C -0.132 4.132 14 C -0.128 4.128 15 Si 1.105 2.895 16 C -0.459 4.459 17 C -0.459 4.459 18 C -0.461 4.461 19 H 0.122 0.878 20 H 0.089 0.911 21 H 0.140 0.860 22 H 0.134 0.866 23 H 0.122 0.878 24 H 0.388 0.612 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 -2.348 -0.323 2.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.429 4.429 3 C -0.035 4.035 4 C -0.144 4.144 5 C -0.114 4.114 6 C -0.136 4.136 7 C -0.188 4.188 8 O -0.359 6.359 9 Si 0.806 3.194 10 H -0.185 1.185 11 H -0.200 1.200 12 H -0.178 1.178 13 C -0.150 4.150 14 C -0.145 4.145 15 Si 1.293 2.707 16 C -0.566 4.566 17 C -0.566 4.566 18 C -0.567 4.567 19 H 0.140 0.860 20 H 0.107 0.893 21 H 0.158 0.842 22 H 0.151 0.849 23 H 0.140 0.860 24 H 0.237 0.763 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.639 -1.454 -0.304 2.212 hybrid contribution -0.069 -0.176 -0.281 0.339 sum -1.708 -1.629 -0.585 2.432 Atomic orbital electron populations 1.24475 0.95522 1.02557 0.94117 1.28373 1.01426 1.08446 1.04619 1.19256 0.95260 0.93831 0.95129 1.21510 0.95476 0.98101 0.99358 1.21113 0.99313 0.92807 0.98125 1.20419 0.97625 0.97487 0.98046 1.24977 0.86853 0.98844 1.08120 1.86480 1.24283 1.86654 1.38506 0.85243 0.78342 0.77359 0.78472 1.18535 1.19976 1.17762 1.21147 0.96478 0.98176 0.99208 1.21453 1.00264 0.92899 0.99933 0.77494 0.64673 0.61886 0.66615 1.26257 1.04969 1.06286 1.19090 1.26246 1.09243 1.12219 1.08930 1.26300 1.18367 1.04700 1.07371 0.85993 0.89317 0.84193 0.84859 0.85985 0.76337 0.85648 0.85070 0.91013 0.90679 0.91202 0.91258 0.90661 0.90651 0.91397 0.90840 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.26 13.31 66.67 0.89 1.15 16 2 C -0.39 0.39 4.42 23.65 0.10 0.49 16 3 C -0.03 -0.08 5.26 -20.12 -0.11 -0.19 16 4 C -0.13 -0.23 8.64 22.52 0.19 -0.03 16 5 C -0.10 -0.24 9.66 22.23 0.21 -0.03 16 6 C -0.14 -0.35 5.36 -19.81 -0.11 -0.46 16 7 C -0.08 -0.05 2.80 71.23 0.20 0.15 16 8 O -0.55 -0.98 12.83 -148.98 -1.91 -2.89 16 9 Si 0.98 0.40 25.13 68.60 1.72 2.12 16 10 H -0.26 -0.48 7.11 99.48 0.71 0.23 16 11 H -0.27 -0.97 7.11 99.48 0.71 -0.27 16 12 H -0.25 -0.09 7.04 99.48 0.70 0.61 16 13 C -0.13 -0.37 8.65 22.23 0.19 -0.18 16 14 C -0.13 -0.37 9.33 22.52 0.21 -0.16 16 15 Si 1.11 -5.20 11.15 68.60 0.76 -4.43 16 16 C -0.46 1.67 8.65 113.37 0.98 2.65 16 17 C -0.46 1.85 8.56 113.37 0.97 2.82 16 18 C -0.46 0.81 8.62 113.37 0.98 1.79 16 19 H 0.12 -0.71 7.36 -2.92 -0.02 -0.74 16 20 H 0.09 -0.11 7.84 -2.91 -0.02 -0.13 16 21 H 0.14 -0.27 6.95 -2.91 -0.02 -0.29 16 22 H 0.13 0.09 8.06 -2.91 -0.02 0.06 16 23 H 0.12 -0.12 7.96 -2.39 -0.02 -0.14 16 24 H 0.39 -1.67 8.70 -74.06 -0.64 -2.32 16 25 H 0.13 0.05 4.84 -2.91 -0.01 0.03 16 26 H 0.13 0.05 7.94 -2.91 -0.02 0.02 16 27 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 28 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 29 H 0.07 -0.24 7.60 -2.39 -0.02 -0.26 16 30 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 32 H 0.07 -0.37 7.68 -2.39 -0.02 -0.39 16 33 H 0.07 -0.07 7.47 -2.39 -0.02 -0.09 16 34 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 35 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 Total: 0.00 -8.73 293.80 6.45 -2.28 By element: Atomic # 1 Polarization: -6.24 SS G_CDS: 1.16 Total: -5.09 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 4.72 Total: 8.01 kcal Atomic # 8 Polarization: -0.98 SS G_CDS: -1.91 Total: -2.89 kcal Atomic # 14 Polarization: -4.80 SS G_CDS: 2.49 Total: -2.31 kcal Total: -8.73 6.45 -2.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_9007478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.952 kcal (2) G-P(sol) polarization free energy of solvation -8.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds