Wall clock time and date at job start Mon Mar 8 2021 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34233 * 116.99422 * 2 1 4 4 O 1.20825 * 120.00284 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99540 * 179.97438 * 3 2 1 6 6 S 1.81402 * 109.46973 * 179.97438 * 5 3 2 7 7 O 1.42095 * 109.47083 * 70.94535 * 6 5 3 8 8 C 1.76199 * 102.99913 * 180.02562 * 6 5 3 9 9 C 1.38328 * 119.87863 * 90.00262 * 8 6 5 10 10 C 1.38014 * 120.11877 * 180.02562 * 9 8 6 11 11 C 1.39333 * 119.88362 * 359.97433 * 10 9 8 12 12 C 1.48396 * 120.12471 * 180.02562 * 11 10 9 13 13 C 1.39722 * 120.53512 * 179.72029 * 12 11 10 14 14 C 1.38467 * 118.30636 * 179.76124 * 13 12 11 15 15 C 1.38256 * 119.28448 * 0.55888 * 14 13 12 16 16 C 1.50707 * 119.48380 * 179.69746 * 15 14 13 17 17 O 1.42895 * 109.47394 * 329.98265 * 16 15 14 18 18 Si 1.86302 * 109.47279 * 209.97972 * 16 15 14 19 19 H 1.48504 * 109.46877 * 60.00171 * 18 16 15 20 20 H 1.48494 * 109.47185 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46921 * 300.00524 * 18 16 15 22 22 N 1.31913 * 121.03407 * 359.68346 * 15 14 13 23 23 C 1.31726 * 121.84982 * 0.02562 * 22 15 14 24 24 C 1.39340 * 119.75441 * 0.28172 * 11 10 9 25 25 C 1.38022 * 119.87629 * 359.48457 * 24 11 10 26 26 H 1.08995 * 109.46987 * 60.00257 * 1 2 3 27 27 H 1.09004 * 109.46607 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47164 * 300.00016 * 1 2 3 29 29 H 1.09004 * 109.47235 * 60.00393 * 5 3 2 30 30 H 1.09002 * 109.47079 * 299.99964 * 5 3 2 31 31 H 1.07991 * 119.93766 * 359.97438 * 9 8 6 32 32 H 1.08006 * 120.06146 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.84804 * 0.02562 * 13 12 11 34 34 H 1.08006 * 120.35251 * 180.28439 * 14 13 12 35 35 H 1.08999 * 109.46687 * 89.98278 * 16 15 14 36 36 H 0.96699 * 113.99986 * 300.00214 * 17 16 15 37 37 H 1.07999 * 119.69718 * 180.02562 * 23 22 15 38 38 H 1.08005 * 120.06244 * 179.72306 * 24 11 10 39 39 H 1.08006 * 119.93586 * 180.23915 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 16 4.0805 3.0146 -0.0003 7 8 3.7948 3.5936 1.2655 8 6 5.8393 2.9080 -0.0003 9 6 6.5271 2.8657 -1.1997 10 6 7.9047 2.7816 -1.2054 11 6 8.6027 2.7399 -0.0003 12 6 10.0839 2.6501 -0.0002 13 6 10.7928 2.6136 1.2033 14 6 12.1736 2.5245 1.1495 15 6 12.8014 2.4867 -0.0817 16 6 14.3044 2.3967 -0.1455 17 8 14.8691 3.0382 0.9998 18 14 14.9121 3.2394 -1.6919 19 1 14.5021 4.6665 -1.6716 20 1 16.3930 3.1501 -1.7550 21 1 14.3252 2.5727 -2.8821 22 7 12.1054 2.5280 -1.2015 23 6 10.7905 2.6069 -1.2003 24 6 7.9044 2.7774 1.2049 25 6 6.5271 2.8663 1.1990 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9564 0.7808 -0.8892 30 1 3.9557 0.7811 0.8908 31 1 5.9851 2.8977 -2.1332 32 1 8.4408 2.7483 -2.1425 33 1 10.2768 2.6495 2.1513 34 1 12.7541 2.4894 2.0596 35 1 14.6053 1.3492 -0.1604 36 1 14.6424 3.9750 1.0775 37 1 10.2555 2.6382 -2.1379 38 1 8.4402 2.7408 2.1420 39 1 5.9851 2.8994 2.1327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15258500_11652898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:44:54 Heat of formation + Delta-G solvation = -93.662786 kcal Electronic energy + Delta-G solvation = -24782.149746 eV Core-core repulsion = 20862.198591 eV Total energy + Delta-G solvation = -3919.951155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.75215 -41.47302 -40.08529 -37.92718 -37.63976 -36.92511 -34.76046 -33.28065 -32.11353 -31.84082 -30.98783 -28.28793 -27.44409 -25.40217 -24.32409 -23.15021 -22.58619 -22.24988 -19.60895 -18.90151 -18.84119 -18.18630 -17.78830 -17.68091 -17.61651 -17.03785 -16.94688 -16.47296 -16.02183 -15.80994 -15.52491 -15.49147 -15.18763 -14.92535 -14.87155 -14.77691 -14.47946 -14.16471 -13.93972 -13.88072 -13.77688 -13.17228 -13.09120 -12.80296 -12.63462 -12.29655 -12.04742 -11.90541 -11.87865 -11.79778 -11.52823 -11.48379 -10.98869 -10.68424 -10.34957 -10.16587 -9.69793 -9.32648 -0.91049 0.06595 0.13979 0.20759 0.63669 1.03025 1.19871 1.48594 1.56606 1.68731 1.73190 2.05683 2.35754 2.69032 2.82891 2.90509 3.20820 3.37032 3.46634 3.59627 3.62586 3.76420 3.80568 3.82033 3.94388 4.09164 4.10868 4.19187 4.20919 4.22600 4.38215 4.48849 4.53811 4.55366 4.60383 4.80341 4.84959 4.85913 5.06262 5.09339 5.24983 5.33085 5.47282 5.68999 6.32564 6.52825 6.74962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.492 3.508 4 O -0.504 6.504 5 C -0.479 4.479 6 S 1.393 4.607 7 O -0.826 6.826 8 C -0.478 4.478 9 C -0.033 4.033 10 C -0.128 4.128 11 C -0.001 4.001 12 C -0.108 4.108 13 C -0.060 4.060 14 C -0.148 4.148 15 C 0.097 3.903 16 C -0.079 4.079 17 O -0.537 6.537 18 Si 0.983 3.017 19 H -0.260 1.260 20 H -0.261 1.261 21 H -0.241 1.241 22 N -0.479 5.479 23 C 0.124 3.876 24 C -0.126 4.126 25 C -0.045 4.045 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.157 0.843 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.378 0.622 37 H 0.164 0.836 38 H 0.129 0.871 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 -2.011 -4.375 4.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.334 3.666 4 O -0.392 6.392 5 C -0.610 4.610 6 S 1.585 4.415 7 O -0.821 6.821 8 C -0.574 4.574 9 C -0.052 4.052 10 C -0.147 4.147 11 C -0.002 4.002 12 C -0.110 4.110 13 C -0.085 4.085 14 C -0.168 4.168 15 C -0.040 4.040 16 C -0.189 4.189 17 O -0.341 6.341 18 Si 0.804 3.196 19 H -0.183 1.183 20 H -0.185 1.185 21 H -0.164 1.164 22 N -0.189 5.189 23 C -0.034 4.034 24 C -0.145 4.145 25 C -0.064 4.064 26 H 0.088 0.912 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.175 0.825 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.226 0.774 37 H 0.181 0.819 38 H 0.147 0.853 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.153 -1.183 -5.767 5.889 hybrid contribution -0.161 -0.966 3.089 3.241 sum -0.009 -2.150 -2.678 3.434 Atomic orbital electron populations 1.23404 0.75368 1.04259 1.03082 1.86506 1.24105 1.32761 1.83624 1.22488 0.90057 0.81895 0.72130 1.90750 1.66976 1.35957 1.45563 1.28236 0.94307 1.27322 1.11150 1.70706 0.80265 0.82232 1.08343 1.93122 1.79496 1.65022 1.44489 1.27992 1.19879 1.12208 0.97333 1.20827 0.93870 0.93794 0.96750 1.21358 0.94577 1.01295 0.97469 1.18812 0.90908 0.96591 0.93933 1.19812 0.92998 1.03369 0.94810 1.21774 0.94046 0.94484 0.98190 1.21863 0.94583 1.00707 0.99600 1.21863 0.97374 0.95557 0.89188 1.25027 0.88720 1.04601 1.00560 1.86525 1.73980 1.27986 1.45628 0.85089 0.78896 0.79543 0.76066 1.18325 1.18486 1.16428 1.67194 1.08487 1.12820 1.30389 1.22886 0.89159 0.93863 0.97494 1.21317 0.94339 1.01239 0.97610 1.21114 0.94309 0.93223 0.97796 0.91248 0.87662 0.91557 0.82549 0.85411 0.83829 0.84664 0.84189 0.83424 0.85232 0.77434 0.81869 0.85339 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.03 16 2 O -0.35 -0.40 10.57 -39.27 -0.41 -0.82 16 3 C 0.49 0.70 7.98 36.01 0.29 0.98 16 4 O -0.50 -2.02 15.61 -18.75 -0.29 -2.31 16 5 C -0.48 0.89 6.48 36.01 0.23 1.13 16 6 S 1.39 -1.42 12.68 -107.50 -1.36 -2.78 16 7 O -0.83 -4.58 16.89 -35.23 -0.60 -5.17 16 8 C -0.48 0.49 5.61 -39.52 -0.22 0.27 16 9 C -0.03 0.10 9.74 -39.63 -0.39 -0.28 16 10 C -0.13 0.28 9.44 -39.26 -0.37 -0.10 16 11 C 0.00 0.00 5.88 -104.90 -0.62 -0.62 16 12 C -0.11 0.02 5.89 -104.75 -0.62 -0.59 16 13 C -0.06 0.04 9.54 -38.94 -0.37 -0.33 16 14 C -0.15 0.07 9.37 -39.49 -0.37 -0.30 16 15 C 0.10 0.05 6.07 -82.55 -0.50 -0.45 16 16 C -0.08 0.04 2.98 36.01 0.11 0.15 16 17 O -0.54 0.39 11.84 -35.23 -0.42 -0.03 16 18 Si 0.98 0.20 27.16 -169.99 -4.62 -4.42 16 19 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 20 H -0.26 -0.29 7.11 56.52 0.40 0.11 16 21 H -0.24 -0.37 7.11 56.52 0.40 0.03 16 22 N -0.48 -0.68 8.35 -9.20 -0.08 -0.75 16 23 C 0.12 -0.01 10.60 -17.19 -0.18 -0.19 16 24 C -0.13 0.00 9.44 -39.25 -0.37 -0.37 16 25 C -0.05 -0.04 9.43 -39.63 -0.37 -0.41 16 26 H 0.07 -0.11 8.13 -51.93 -0.42 -0.53 16 27 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16 28 H 0.07 -0.03 8.13 -51.93 -0.42 -0.46 16 29 H 0.16 -0.88 8.14 -51.92 -0.42 -1.30 16 30 H 0.13 -0.20 8.14 -51.92 -0.42 -0.62 16 31 H 0.14 -1.04 8.06 -52.49 -0.42 -1.46 16 32 H 0.14 -0.61 6.24 -52.48 -0.33 -0.94 16 33 H 0.14 -0.35 6.33 -52.49 -0.33 -0.68 16 34 H 0.15 -0.25 7.47 -52.48 -0.39 -0.64 16 35 H 0.13 -0.18 7.96 -51.93 -0.41 -0.60 16 36 H 0.38 -1.46 8.70 45.56 0.40 -1.06 16 37 H 0.16 -0.44 6.23 -52.49 -0.33 -0.77 16 38 H 0.13 -0.20 6.28 -52.48 -0.33 -0.53 16 39 H 0.13 0.21 7.44 -52.48 -0.39 -0.18 16 LS Contribution 348.81 15.07 5.26 5.26 Total: 0.00 -12.72 348.81 -8.65 -21.38 By element: Atomic # 1 Polarization: -6.83 SS G_CDS: -3.45 Total: -10.27 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.69 Total: -0.08 kcal Atomic # 7 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.75 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -1.72 Total: -8.32 kcal Atomic # 14 Polarization: 0.20 SS G_CDS: -4.62 Total: -4.42 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -1.36 Total: -2.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -12.72 -8.65 -21.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15258500_11652898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.287 kcal (2) G-P(sol) polarization free energy of solvation -12.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds