Wall clock time and date at job start Mon Mar 8 2021 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34233 * 116.99422 * 2 1 4 4 O 1.20825 * 120.00284 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99540 * 179.97438 * 3 2 1 6 6 S 1.81402 * 109.46973 * 179.97438 * 5 3 2 7 7 O 1.42095 * 109.47083 * 70.94535 * 6 5 3 8 8 C 1.76199 * 102.99913 * 180.02562 * 6 5 3 9 9 C 1.38328 * 119.87863 * 90.00262 * 8 6 5 10 10 C 1.38014 * 120.11877 * 180.02562 * 9 8 6 11 11 C 1.39333 * 119.88362 * 359.97433 * 10 9 8 12 12 C 1.48396 * 120.12471 * 180.02562 * 11 10 9 13 13 C 1.39722 * 120.53512 * 179.72029 * 12 11 10 14 14 C 1.38467 * 118.30636 * 179.76124 * 13 12 11 15 15 C 1.38256 * 119.28448 * 0.55888 * 14 13 12 16 16 C 1.50707 * 119.48380 * 179.69746 * 15 14 13 17 17 O 1.42895 * 109.47394 * 329.98265 * 16 15 14 18 18 Si 1.86302 * 109.47279 * 209.97972 * 16 15 14 19 19 H 1.48504 * 109.46877 * 60.00171 * 18 16 15 20 20 H 1.48494 * 109.47185 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46921 * 300.00524 * 18 16 15 22 22 N 1.31913 * 121.03407 * 359.68346 * 15 14 13 23 23 C 1.31726 * 121.84982 * 0.02562 * 22 15 14 24 24 C 1.39340 * 119.75441 * 0.28172 * 11 10 9 25 25 C 1.38022 * 119.87629 * 359.48457 * 24 11 10 26 26 H 1.08995 * 109.46987 * 60.00257 * 1 2 3 27 27 H 1.09004 * 109.46607 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47164 * 300.00016 * 1 2 3 29 29 H 1.09004 * 109.47235 * 60.00393 * 5 3 2 30 30 H 1.09002 * 109.47079 * 299.99964 * 5 3 2 31 31 H 1.07991 * 119.93766 * 359.97438 * 9 8 6 32 32 H 1.08006 * 120.06146 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.84804 * 0.02562 * 13 12 11 34 34 H 1.08006 * 120.35251 * 180.28439 * 14 13 12 35 35 H 1.08999 * 109.46687 * 89.98278 * 16 15 14 36 36 H 0.96699 * 113.99986 * 300.00214 * 17 16 15 37 37 H 1.07999 * 119.69718 * 180.02562 * 23 22 15 38 38 H 1.08005 * 120.06244 * 179.72306 * 24 11 10 39 39 H 1.08006 * 119.93586 * 180.23915 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 16 4.0805 3.0146 -0.0003 7 8 3.7948 3.5936 1.2655 8 6 5.8393 2.9080 -0.0003 9 6 6.5271 2.8657 -1.1997 10 6 7.9047 2.7816 -1.2054 11 6 8.6027 2.7399 -0.0003 12 6 10.0839 2.6501 -0.0002 13 6 10.7928 2.6136 1.2033 14 6 12.1736 2.5245 1.1495 15 6 12.8014 2.4867 -0.0817 16 6 14.3044 2.3967 -0.1455 17 8 14.8691 3.0382 0.9998 18 14 14.9121 3.2394 -1.6919 19 1 14.5021 4.6665 -1.6716 20 1 16.3930 3.1501 -1.7550 21 1 14.3252 2.5727 -2.8821 22 7 12.1054 2.5280 -1.2015 23 6 10.7905 2.6069 -1.2003 24 6 7.9044 2.7774 1.2049 25 6 6.5271 2.8663 1.1990 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9564 0.7808 -0.8892 30 1 3.9557 0.7811 0.8908 31 1 5.9851 2.8977 -2.1332 32 1 8.4408 2.7483 -2.1425 33 1 10.2768 2.6495 2.1513 34 1 12.7541 2.4894 2.0596 35 1 14.6053 1.3492 -0.1604 36 1 14.6424 3.9750 1.0775 37 1 10.2555 2.6382 -2.1379 38 1 8.4402 2.7408 2.1420 39 1 5.9851 2.8994 2.1327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_15258500_11652898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:44:54 Heat of formation + Delta-G solvation = -97.204012 kcal Electronic energy + Delta-G solvation = -24782.303305 eV Core-core repulsion = 20862.198591 eV Total energy + Delta-G solvation = -3920.104714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67259 -41.56204 -39.96787 -37.84712 -37.74051 -37.10917 -34.67704 -33.19625 -31.98042 -31.79611 -30.89888 -28.21372 -27.37213 -25.30560 -24.22899 -23.04473 -22.60712 -22.18412 -19.52776 -18.90827 -18.81634 -18.12376 -17.80556 -17.71548 -17.57736 -16.95801 -16.91269 -16.40665 -15.94210 -15.80039 -15.48564 -15.34344 -15.10261 -14.87558 -14.80193 -14.72007 -14.46436 -14.06173 -13.94461 -13.82099 -13.73721 -13.16040 -13.03687 -12.74279 -12.58576 -12.21319 -12.05733 -11.95642 -11.91720 -11.90632 -11.57192 -11.43851 -10.94105 -10.61988 -10.30417 -10.02789 -9.69146 -9.24526 -0.82333 0.14514 0.19918 0.34906 0.70613 0.95418 1.21696 1.51432 1.57935 1.63823 1.77897 2.00824 2.44199 2.73429 2.91813 2.99613 3.33507 3.48214 3.59683 3.60980 3.76127 3.89122 3.96914 3.99951 4.05555 4.21899 4.23522 4.29164 4.34947 4.43375 4.53110 4.58560 4.65400 4.68245 4.75556 4.91603 4.96271 4.99983 5.20709 5.21921 5.22835 5.44557 5.57087 5.85014 6.46130 6.54230 6.81830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.360 6.360 3 C 0.487 3.513 4 O -0.537 6.537 5 C -0.472 4.472 6 S 1.434 4.566 7 O -0.901 6.901 8 C -0.479 4.479 9 C -0.023 4.023 10 C -0.129 4.129 11 C -0.011 4.011 12 C -0.112 4.112 13 C -0.067 4.067 14 C -0.150 4.150 15 C 0.085 3.915 16 C -0.070 4.070 17 O -0.545 6.545 18 Si 1.013 2.987 19 H -0.273 1.273 20 H -0.275 1.275 21 H -0.260 1.260 22 N -0.501 5.501 23 C 0.117 3.883 24 C -0.138 4.138 25 C -0.072 4.072 26 H 0.074 0.926 27 H 0.130 0.870 28 H 0.056 0.944 29 H 0.203 0.797 30 H 0.127 0.873 31 H 0.193 0.807 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.138 0.862 36 H 0.391 0.609 37 H 0.188 0.812 38 H 0.133 0.867 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -2.886 -5.971 6.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.276 6.276 3 C 0.331 3.669 4 O -0.428 6.428 5 C -0.604 4.604 6 S 1.629 4.371 7 O -0.896 6.896 8 C -0.577 4.577 9 C -0.042 4.042 10 C -0.148 4.148 11 C -0.012 4.012 12 C -0.114 4.114 13 C -0.092 4.092 14 C -0.170 4.170 15 C -0.052 4.052 16 C -0.181 4.181 17 O -0.351 6.351 18 Si 0.837 3.163 19 H -0.198 1.198 20 H -0.200 1.200 21 H -0.185 1.185 22 N -0.212 5.212 23 C -0.040 4.040 24 C -0.157 4.157 25 C -0.091 4.091 26 H 0.093 0.907 27 H 0.148 0.852 28 H 0.075 0.925 29 H 0.220 0.780 30 H 0.145 0.855 31 H 0.210 0.790 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.156 0.844 36 H 0.240 0.760 37 H 0.204 0.796 38 H 0.151 0.849 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.300 -2.044 -7.351 7.636 hybrid contribution -0.225 -0.744 3.535 3.619 sum 0.075 -2.788 -3.817 4.727 Atomic orbital electron populations 1.23630 0.74460 1.05899 1.02910 1.86505 1.25170 1.32568 1.83335 1.23042 0.91167 0.81535 0.71142 1.90740 1.67944 1.36918 1.47160 1.28210 0.92323 1.26570 1.13330 1.69780 0.79586 0.81873 1.05835 1.93013 1.81249 1.68155 1.47218 1.27906 1.19317 1.12723 0.97704 1.21391 0.93799 0.91376 0.97627 1.21786 0.95141 0.99974 0.97884 1.18937 0.90823 0.97029 0.94440 1.19918 0.93238 1.03238 0.94965 1.22023 0.94191 0.94118 0.98893 1.21981 0.94784 1.00496 0.99695 1.22019 0.97747 0.95959 0.89445 1.24911 0.88322 1.04920 0.99948 1.86496 1.74047 1.29195 1.45389 0.84654 0.77443 0.78388 0.75772 1.19781 1.19986 1.18457 1.67205 1.09311 1.13736 1.30924 1.23276 0.88870 0.93374 0.98512 1.21398 0.94124 1.01786 0.98421 1.21090 0.94855 0.95298 0.97906 0.90724 0.85160 0.92512 0.77996 0.85461 0.79003 0.81917 0.82987 0.82438 0.84443 0.75966 0.79570 0.84939 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.69 10.57 -51.45 -0.54 -1.24 16 3 C 0.49 1.39 7.98 71.24 0.57 1.96 16 4 O -0.54 -4.80 15.61 21.97 0.34 -4.46 16 5 C -0.47 2.17 6.48 71.24 0.46 2.63 16 6 S 1.43 -2.62 12.68 -56.49 -0.72 -3.34 16 7 O -0.90 -12.05 16.89 -148.98 -2.52 -14.56 16 8 C -0.48 1.22 5.61 22.31 0.13 1.35 16 9 C -0.02 0.20 9.74 22.24 0.22 0.42 16 10 C -0.13 0.85 9.44 22.48 0.21 1.07 16 11 C -0.01 0.02 5.88 -20.04 -0.12 -0.10 16 12 C -0.11 0.11 5.89 -19.95 -0.12 -0.01 16 13 C -0.07 0.09 9.54 22.68 0.22 0.31 16 14 C -0.15 0.15 9.37 22.33 0.21 0.36 16 15 C 0.08 0.08 6.07 42.55 0.26 0.34 16 16 C -0.07 0.08 2.98 71.24 0.21 0.29 16 17 O -0.55 0.95 11.84 -148.98 -1.76 -0.81 16 18 Si 1.01 0.95 27.16 68.60 1.86 2.82 16 19 H -0.27 -0.79 7.11 99.48 0.71 -0.08 16 20 H -0.27 -0.81 7.11 99.48 0.71 -0.10 16 21 H -0.26 -1.02 7.11 99.48 0.71 -0.31 16 22 N -0.50 -1.29 8.35 -183.02 -1.53 -2.82 16 23 C 0.12 -0.12 10.60 84.97 0.90 0.78 16 24 C -0.14 -0.09 9.44 22.48 0.21 0.12 16 25 C -0.07 -0.20 9.43 22.24 0.21 0.01 16 26 H 0.07 -0.23 8.13 -2.39 -0.02 -0.25 16 27 H 0.13 -0.99 8.14 -2.39 -0.02 -1.01 16 28 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 29 H 0.20 -2.90 8.14 -2.39 -0.02 -2.92 16 30 H 0.13 -0.44 8.14 -2.39 -0.02 -0.45 16 31 H 0.19 -3.66 8.06 -2.92 -0.02 -3.68 16 32 H 0.16 -2.03 6.24 -2.91 -0.02 -2.05 16 33 H 0.15 -0.71 6.33 -2.91 -0.02 -0.73 16 34 H 0.16 -0.58 7.47 -2.91 -0.02 -0.60 16 35 H 0.14 -0.42 7.96 -2.39 -0.02 -0.44 16 36 H 0.39 -3.09 8.70 -74.06 -0.64 -3.74 16 37 H 0.19 -1.36 6.23 -2.91 -0.02 -1.38 16 38 H 0.13 -0.22 6.28 -2.91 -0.02 -0.24 16 39 H 0.11 0.71 7.44 -2.91 -0.02 0.68 16 Total: 0.00 -32.20 348.81 1.12 -31.07 By element: Atomic # 1 Polarization: -18.54 SS G_CDS: 1.22 Total: -17.32 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 4.76 Total: 10.66 kcal Atomic # 7 Polarization: -1.29 SS G_CDS: -1.53 Total: -2.82 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -4.48 Total: -21.07 kcal Atomic # 14 Polarization: 0.95 SS G_CDS: 1.86 Total: 2.82 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -0.72 Total: -3.34 kcal Total: -32.20 1.12 -31.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15258500_11652898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.131 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds