Wall clock time and date at job start Mon Mar 8 2021 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35252 * 116.99644 * 2 1 4 4 O 1.21776 * 120.00057 * 0.02562 * 3 2 1 5 5 C 1.40015 * 120.00073 * 180.02562 * 3 2 1 6 6 S 1.55352 * 120.00061 * 180.02562 * 5 3 2 7 7 O 1.52202 * 103.00181 * 73.12852 * 6 5 3 8 8 C 1.76199 * 102.99847 * 179.97438 * 6 5 3 9 9 C 1.38328 * 119.87863 * 90.00163 * 8 6 5 10 10 C 1.38014 * 120.11877 * 180.02562 * 9 8 6 11 11 C 1.39333 * 119.88362 * 359.97433 * 10 9 8 12 12 C 1.48396 * 120.12471 * 180.02562 * 11 10 9 13 13 C 1.39722 * 120.53512 * 179.72029 * 12 11 10 14 14 C 1.38467 * 118.30636 * 179.76124 * 13 12 11 15 15 C 1.38256 * 119.28448 * 0.55888 * 14 13 12 16 16 C 1.50707 * 119.48380 * 179.69746 * 15 14 13 17 17 O 1.42895 * 109.47394 * 329.98265 * 16 15 14 18 18 Si 1.86302 * 109.47279 * 209.97972 * 16 15 14 19 19 H 1.48504 * 109.46877 * 60.00171 * 18 16 15 20 20 H 1.48494 * 109.47185 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46921 * 300.00524 * 18 16 15 22 22 N 1.31913 * 121.03407 * 359.68346 * 15 14 13 23 23 C 1.31726 * 121.84982 * 0.02562 * 22 15 14 24 24 C 1.39340 * 119.75441 * 0.28172 * 11 10 9 25 25 C 1.38022 * 119.87629 * 359.48457 * 24 11 10 26 26 H 1.08994 * 109.47484 * 60.00009 * 1 2 3 27 27 H 1.09007 * 109.46643 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47110 * 299.99582 * 1 2 3 29 29 H 1.07995 * 119.99846 * 0.02562 * 5 3 2 30 30 H 1.07991 * 119.93766 * 359.97438 * 9 8 6 31 31 H 1.08006 * 120.06146 * 179.97438 * 10 9 8 32 32 H 1.08001 * 120.84804 * 0.02562 * 13 12 11 33 33 H 1.08006 * 120.35251 * 180.28439 * 14 13 12 34 34 H 1.08999 * 109.46687 * 89.98278 * 16 15 14 35 35 H 0.96699 * 113.99986 * 300.00214 * 17 16 15 36 36 H 1.07999 * 119.69718 * 180.02562 * 23 22 15 37 37 H 1.08005 * 120.06244 * 179.72306 * 24 11 10 38 38 H 1.08006 * 119.93586 * 180.23915 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2051 0.0000 4 8 1.3797 2.2264 0.0005 5 6 3.4412 1.2785 -0.0005 6 16 4.1464 2.6628 0.0001 7 8 3.9189 3.1623 1.4197 8 6 5.8561 2.2366 -0.0002 9 6 6.5247 2.0705 -1.1997 10 6 7.8637 1.7361 -1.2056 11 6 8.5422 1.5664 -0.0006 12 6 9.9821 1.2074 -0.0008 13 6 10.6723 1.0409 1.2026 14 6 12.0136 0.7010 1.1486 15 6 12.6240 0.5504 -0.0827 16 6 14.0853 0.1873 -0.1467 17 8 14.7576 0.7137 0.9991 18 14 14.8368 0.9062 -1.6924 19 1 14.6945 2.3842 -1.6707 20 1 16.2764 0.5479 -1.7557 21 1 14.1380 0.3591 -2.8831 22 7 11.9474 0.7191 -1.2024 23 6 10.6690 1.0370 -1.2009 24 6 7.8624 1.7297 1.2047 25 6 6.5245 2.0688 1.1990 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0294 0.3728 -0.0014 30 1 5.9977 2.2018 -2.1331 31 1 8.3847 1.6062 -2.1428 32 1 10.1714 1.1696 2.1507 33 1 12.5778 0.5596 2.0587 34 1 14.1897 -0.8976 -0.1626 35 1 14.7059 1.6761 1.0778 36 1 10.1488 1.1664 -2.1384 37 1 8.3824 1.5950 2.1417 38 1 5.9977 2.1995 2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_15258500_11652898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:45:03 Heat of formation + Delta-G solvation = -147.150912 kcal Electronic energy + Delta-G solvation = -24550.886481 eV Core-core repulsion = 20642.271646 eV Total energy + Delta-G solvation = -3908.614835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69916 -38.60119 -38.47403 -37.09865 -34.71050 -33.53738 -32.25146 -31.82297 -30.49058 -29.70983 -28.60907 -26.38613 -25.87695 -24.21050 -23.04734 -21.66531 -21.07205 -19.96271 -18.22150 -17.43612 -16.66360 -16.47652 -15.99149 -15.86197 -15.66253 -15.08135 -14.89416 -14.55243 -14.46737 -14.20255 -14.10706 -13.92702 -13.61511 -13.58927 -12.82877 -12.69271 -12.52537 -12.19831 -12.06124 -11.85538 -11.74180 -11.38090 -11.21171 -10.98146 -10.82024 -10.57077 -10.39344 -10.26665 -10.07924 -9.61694 -9.38861 -9.37512 -8.68879 -8.57518 -8.41449 -8.00672 -7.17872 -5.80962 0.42736 1.04103 1.75239 1.80533 1.98202 2.22770 2.31312 2.74539 3.46144 3.59705 3.82307 3.98682 4.18970 4.51105 4.54224 4.60610 4.71149 4.73477 4.87489 5.05086 5.19068 5.21696 5.28576 5.37511 5.56537 5.68919 5.85502 5.90305 5.98388 6.00961 6.05231 6.14317 6.22062 6.24162 6.39824 6.49689 6.66463 6.78400 7.04236 7.04777 7.33248 7.49430 7.60778 7.68629 8.30212 9.84651 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.031843 B = 0.002155 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.093108 B =12987.221034 C =13144.976328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.383 6.383 3 C 0.539 3.461 4 O -0.620 6.620 5 C -1.033 5.033 6 S 1.464 4.536 7 O -0.928 6.928 8 C -0.410 4.410 9 C -0.055 4.055 10 C -0.128 4.128 11 C -0.049 4.049 12 C -0.076 4.076 13 C -0.072 4.072 14 C -0.146 4.146 15 C 0.077 3.923 16 C -0.074 4.074 17 O -0.540 6.540 18 Si 0.985 3.015 19 H -0.260 1.260 20 H -0.266 1.266 21 H -0.242 1.242 22 N -0.479 5.479 23 C 0.111 3.889 24 C -0.126 4.126 25 C -0.055 4.055 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.125 0.875 35 H 0.377 0.623 36 H 0.163 0.837 37 H 0.117 0.883 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.401 -1.290 -5.636 21.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.303 6.303 3 C 0.404 3.596 4 O -0.525 6.525 5 C -1.160 5.160 6 S 1.665 4.335 7 O -0.924 6.924 8 C -0.502 4.502 9 C -0.074 4.074 10 C -0.147 4.147 11 C -0.050 4.050 12 C -0.078 4.078 13 C -0.097 4.097 14 C -0.165 4.165 15 C -0.060 4.060 16 C -0.184 4.184 17 O -0.344 6.344 18 Si 0.806 3.194 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.165 1.165 22 N -0.190 5.190 23 C -0.047 4.047 24 C -0.145 4.145 25 C -0.074 4.074 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.126 0.874 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.143 0.857 35 H 0.224 0.776 36 H 0.180 0.820 37 H 0.135 0.865 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.774 -0.626 -7.035 21.941 hybrid contribution -0.600 -1.847 2.871 3.466 sum 20.173 -2.473 -4.164 20.746 Atomic orbital electron populations 1.22398 0.81190 1.00659 1.00834 1.86273 1.19851 1.36513 1.87637 1.17867 0.87854 0.79631 0.74255 1.90677 1.67648 1.34982 1.59205 1.26221 0.99591 1.19263 1.70948 1.66631 0.75575 0.85067 1.06178 1.94469 1.82325 1.79077 1.36533 1.28874 1.22296 1.03458 0.95592 1.20832 0.93269 0.95819 0.97461 1.21205 0.95235 1.01692 0.96532 1.18547 0.90656 1.01546 0.94251 1.19926 0.94043 0.99560 0.94298 1.21779 0.93928 0.95489 0.98502 1.21766 0.94942 1.00614 0.99218 1.21657 0.97038 0.97941 0.89390 1.24944 0.88998 1.04397 1.00096 1.86485 1.75330 1.26671 1.45930 0.85088 0.77744 0.79996 0.76565 1.18380 1.19059 1.16495 1.67100 1.09025 1.12519 1.30321 1.22848 0.89249 0.94788 0.97791 1.21240 0.95128 1.01490 0.96643 1.21201 0.93371 0.93776 0.99027 0.93792 0.90624 0.93957 0.87401 0.84762 0.85931 0.84309 0.83952 0.85718 0.77553 0.81963 0.86527 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.96 10.45 101.05 1.06 2.01 16 2 O -0.38 -10.42 10.47 -42.04 -0.44 -10.86 16 3 C 0.54 16.22 7.63 31.40 0.24 16.46 16 4 O -0.62 -19.42 16.06 -19.47 -0.31 -19.73 16 5 C -1.03 -29.63 8.93 31.40 0.28 -29.35 16 6 S 1.46 36.24 12.78 -107.50 -1.37 34.87 16 7 O -0.93 -29.17 17.06 -35.23 -0.60 -29.77 16 8 C -0.41 -8.56 5.35 -39.52 -0.21 -8.78 16 9 C -0.05 -0.91 9.74 -39.63 -0.39 -1.29 16 10 C -0.13 -1.87 9.44 -39.26 -0.37 -2.24 16 11 C -0.05 -0.75 5.88 -104.90 -0.62 -1.36 16 12 C -0.08 -0.99 5.89 -104.75 -0.62 -1.61 16 13 C -0.07 -0.82 9.54 -38.94 -0.37 -1.19 16 14 C -0.15 -1.48 9.37 -39.49 -0.37 -1.85 16 15 C 0.08 0.81 6.07 -82.55 -0.50 0.31 16 16 C -0.07 -0.61 2.98 36.01 0.11 -0.50 16 17 O -0.54 -4.09 11.84 -35.23 -0.42 -4.51 16 18 Si 0.98 8.14 27.16 -169.99 -4.62 3.52 16 19 H -0.26 -2.39 7.11 56.52 0.40 -1.98 16 20 H -0.27 -2.23 7.11 56.52 0.40 -1.83 16 21 H -0.24 -2.37 7.11 56.52 0.40 -1.97 16 22 N -0.48 -5.74 8.35 -9.20 -0.08 -5.82 16 23 C 0.11 1.33 10.60 -17.19 -0.18 1.15 16 24 C -0.13 -2.14 9.44 -39.25 -0.37 -2.51 16 25 C -0.05 -1.15 9.44 -39.63 -0.37 -1.52 16 26 H 0.04 0.88 8.13 -51.93 -0.42 0.46 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.90 8.13 -51.93 -0.42 0.48 16 29 H 0.11 3.15 7.87 -45.46 -0.36 2.79 16 30 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.12 1.35 6.24 -52.48 -0.33 1.02 16 32 H 0.14 1.42 6.33 -52.49 -0.33 1.09 16 33 H 0.14 1.19 7.47 -52.48 -0.39 0.79 16 34 H 0.13 0.91 7.96 -51.93 -0.41 0.49 16 35 H 0.38 1.69 8.70 45.56 0.40 2.08 16 36 H 0.16 1.61 6.23 -52.49 -0.33 1.29 16 37 H 0.12 1.66 6.28 -52.48 -0.33 1.33 16 38 H 0.13 3.04 7.22 -52.48 -0.38 2.66 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -40.20 342.54 -8.31 -48.51 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -2.95 Total: 10.91 kcal Atomic # 6 Polarization: -29.60 SS G_CDS: -2.69 Total: -32.29 kcal Atomic # 7 Polarization: -5.74 SS G_CDS: -0.08 Total: -5.82 kcal Atomic # 8 Polarization: -63.10 SS G_CDS: -1.77 Total: -64.87 kcal Atomic # 14 Polarization: 8.14 SS G_CDS: -4.62 Total: 3.52 kcal Atomic # 16 Polarization: 36.24 SS G_CDS: -1.37 Total: 34.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -40.20 -8.31 -48.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_15258500_11652898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.640 kcal (2) G-P(sol) polarization free energy of solvation -40.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds